Wall clock time and date at job start Tue Mar 31 2020 08:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99940 * 2 1 4 4 H 1.48495 * 109.47007 * 270.00031 * 3 2 1 5 5 H 1.48503 * 109.47286 * 30.00306 * 3 2 1 6 6 H 1.48497 * 109.46788 * 149.99860 * 3 2 1 7 7 C 1.37866 * 119.99758 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00372 * 0.02562 * 7 2 1 9 9 C 1.50707 * 120.00264 * 180.02562 * 7 2 1 10 10 N 1.46495 * 109.47513 * 180.02562 * 9 7 2 11 11 C 1.46504 * 120.00230 * 89.99967 * 10 9 7 12 12 C 1.50697 * 109.47084 * 270.00390 * 11 10 9 13 13 C 1.34515 * 125.79567 * 89.99574 * 12 11 10 14 14 C 1.41381 * 106.84269 * 179.97438 * 13 12 11 15 15 C 1.34509 * 106.84114 * 0.02562 * 14 13 12 16 16 O 1.34301 * 108.42378 * 0.26244 * 15 14 13 17 17 C 1.34773 * 119.99819 * 270.00172 * 10 9 7 18 18 O 1.21622 * 119.99831 * 179.97438 * 17 10 9 19 19 C 1.47095 * 120.00426 * 359.97438 * 17 10 9 20 20 C 1.32996 * 120.00683 * 187.02778 * 19 17 10 21 21 C 1.51268 * 120.84519 * 12.14789 * 20 19 17 22 22 C 1.53664 * 108.31268 * 128.61355 * 21 20 19 23 23 C 1.52960 * 109.31989 * 54.86083 * 22 21 20 24 24 C 1.52964 * 109.81956 * 296.27393 * 23 22 21 25 25 C 1.51265 * 120.85317 * 192.42522 * 20 19 17 26 26 H 0.97008 * 119.99648 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.46630 * 59.99882 * 9 7 2 28 28 H 1.09002 * 109.46839 * 300.00654 * 9 7 2 29 29 H 1.08993 * 109.47046 * 150.00015 * 11 10 9 30 30 H 1.09001 * 109.46891 * 29.99748 * 11 10 9 31 31 H 1.08001 * 126.57531 * 359.94770 * 13 12 11 32 32 H 1.08002 * 126.57630 * 180.02562 * 14 13 12 33 33 H 1.07997 * 125.78693 * 179.97438 * 15 14 13 34 34 H 1.08005 * 120.00156 * 7.03126 * 19 17 10 35 35 H 1.09003 * 109.62637 * 248.39090 * 21 20 19 36 36 H 1.09003 * 109.62608 * 8.95571 * 21 20 19 37 37 H 1.08997 * 109.63081 * 294.84380 * 22 21 20 38 38 H 1.09001 * 109.42415 * 174.75545 * 22 21 20 39 39 H 1.09001 * 109.41593 * 176.16197 * 23 22 21 40 40 H 1.09006 * 109.41701 * 56.37786 * 23 22 21 41 41 H 1.08994 * 109.47866 * 303.61824 * 24 23 22 42 42 H 1.08996 * 109.48296 * 183.58083 * 24 23 22 43 43 H 1.08998 * 109.62804 * 351.04147 * 25 20 19 44 44 H 1.09004 * 109.62379 * 111.61405 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 3.9998 -2.5753 0.0010 11 6 4.2445 -3.2657 -1.2678 12 6 2.9888 -3.9759 -1.7035 13 6 2.0185 -3.4557 -2.4764 14 6 1.0371 -4.4611 -2.6339 15 6 1.4660 -5.5353 -1.9474 16 8 2.6457 -5.2337 -1.3809 17 6 4.2239 -3.2109 1.1681 18 8 4.6289 -4.3577 1.1680 19 6 3.9788 -2.5176 2.4421 20 6 4.3303 -3.0908 3.5896 21 6 5.2196 -4.3144 3.6049 22 6 6.3849 -4.0523 4.5717 23 6 5.8278 -3.6615 5.9416 24 6 5.0566 -2.3451 5.8315 25 6 3.8461 -2.5395 4.9124 26 1 -0.4850 0.8401 0.0004 27 1 3.8745 -0.6801 0.8911 28 1 3.8752 -0.6804 -0.8888 29 1 5.0463 -3.9924 -1.1373 30 1 4.5328 -2.5388 -2.0272 31 1 1.9938 -2.4607 -2.8957 32 1 0.1191 -4.3817 -3.1974 33 1 0.9472 -6.4787 -1.8621 34 1 3.5133 -1.5430 2.4458 35 1 4.6474 -5.1786 3.9423 36 1 5.6077 -4.4974 2.6029 37 1 7.0048 -3.2426 4.1869 38 1 6.9862 -4.9563 4.6682 39 1 6.6504 -3.5416 6.6465 40 1 5.1584 -4.4448 6.2975 41 1 5.7080 -1.5758 5.4170 42 1 4.7164 -2.0392 6.8208 43 1 3.3515 -1.5817 4.7509 44 1 3.1490 -3.2423 5.3687 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299556362.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:54:06 Heat of formation + Delta-G solvation = -23.208602 kcal Electronic energy + Delta-G solvation = -25400.921137 eV Core-core repulsion = 21898.532635 eV Total energy + Delta-G solvation = -3502.388502 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.37267 -41.03156 -38.95067 -36.94326 -34.60561 -33.84990 -33.62362 -31.87811 -31.80548 -29.73183 -28.26199 -26.31106 -24.46421 -23.80660 -22.57720 -22.45074 -21.43849 -20.50269 -19.10259 -19.01423 -18.29573 -17.96895 -17.20067 -16.59019 -16.34571 -16.03444 -15.74968 -15.18841 -15.12143 -15.00797 -14.61366 -14.35335 -14.16458 -13.89667 -13.70805 -13.62453 -13.53067 -13.47210 -13.14679 -13.00827 -12.69592 -12.61556 -12.40005 -11.98604 -11.96694 -11.73332 -11.66836 -11.56264 -11.13778 -10.76154 -10.71230 -10.32508 -9.88539 -9.54847 -9.24306 -8.22847 -6.28313 0.44558 0.83124 1.40557 1.42379 1.51213 1.74712 2.15521 2.37156 2.41561 2.49929 3.10442 3.66478 3.82874 3.89917 4.01856 4.09376 4.13915 4.22198 4.26421 4.35876 4.44670 4.50455 4.52689 4.54913 4.66200 4.69525 4.82604 4.85550 4.99602 5.03404 5.08610 5.11760 5.18905 5.19703 5.21585 5.27849 5.36450 5.48300 5.48955 5.64437 5.67743 5.73098 5.75248 6.25192 6.31501 6.61444 6.78861 7.27885 7.38486 8.93484 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.010810 B = 0.005885 C = 0.004245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2589.637002 B = 4756.896626 C = 6594.122138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.019 3.981 3 Si 0.936 3.064 4 H -0.265 1.265 5 H -0.289 1.289 6 H -0.237 1.237 7 C -0.521 4.521 8 H 0.028 0.972 9 C 0.214 3.786 10 N -0.591 5.591 11 C 0.197 3.803 12 C -0.041 4.041 13 C -0.188 4.188 14 C -0.230 4.230 15 C -0.050 4.050 16 O -0.192 6.192 17 C 0.547 3.453 18 O -0.574 6.574 19 C -0.241 4.241 20 C -0.024 4.024 21 C -0.118 4.118 22 C -0.110 4.110 23 C -0.119 4.119 24 C -0.111 4.111 25 C -0.094 4.094 26 H 0.265 0.735 27 H 0.049 0.951 28 H 0.050 0.950 29 H 0.095 0.905 30 H 0.130 0.870 31 H 0.140 0.860 32 H 0.160 0.840 33 H 0.235 0.765 34 H 0.125 0.875 35 H 0.069 0.931 36 H 0.096 0.904 37 H 0.057 0.943 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.085 0.915 43 H 0.071 0.929 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.074 -4.815 5.623 13.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.179 4.179 3 Si 0.759 3.241 4 H -0.190 1.190 5 H -0.215 1.215 6 H -0.161 1.161 7 C -0.559 4.559 8 H 0.046 0.954 9 C 0.092 3.908 10 N -0.319 5.319 11 C 0.074 3.926 12 C -0.092 4.092 13 C -0.208 4.208 14 C -0.249 4.249 15 C -0.118 4.118 16 O -0.088 6.088 17 C 0.341 3.659 18 O -0.458 6.458 19 C -0.262 4.262 20 C -0.026 4.026 21 C -0.155 4.155 22 C -0.148 4.148 23 C -0.156 4.156 24 C -0.149 4.149 25 C -0.131 4.131 26 H 0.074 0.926 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.113 0.887 30 H 0.147 0.853 31 H 0.158 0.842 32 H 0.178 0.822 33 H 0.251 0.749 34 H 0.143 0.857 35 H 0.087 0.913 36 H 0.113 0.887 37 H 0.076 0.924 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.104 0.896 43 H 0.090 0.910 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 11.333 -5.436 5.779 13.834 hybrid contribution -1.086 1.019 -0.569 1.594 sum 10.246 -4.417 5.211 12.314 Atomic orbital electron populations 1.70077 1.08358 1.27914 1.52037 1.25720 0.95350 1.02694 0.94157 0.85890 0.79912 0.78818 0.79473 1.18958 1.21481 1.16054 1.21402 0.90934 0.92969 1.50613 0.95401 1.19781 0.93357 0.78808 0.98818 1.47961 1.63982 1.15160 1.04834 1.19903 0.90502 0.95652 0.86513 1.23090 1.01239 0.83549 1.01281 1.21667 0.94948 1.00480 1.03722 1.22089 1.02308 0.94028 1.06485 1.24678 0.86275 1.02277 0.98547 1.84033 1.35073 1.30037 1.59679 1.18863 0.76234 0.85634 0.85198 1.90528 1.49084 1.18699 1.87530 1.22465 1.09422 1.02510 0.91794 1.22993 0.90604 0.94581 0.94420 1.21579 0.96195 0.94463 1.03251 1.21645 0.96443 1.01730 0.94965 1.21558 1.00224 0.97239 0.96605 1.21569 0.95679 0.98153 0.99476 1.21028 0.98819 1.01395 0.91849 0.92633 0.93337 0.93227 0.88654 0.85258 0.84228 0.82227 0.74855 0.85745 0.91288 0.88662 0.92371 0.90621 0.90084 0.91585 0.91935 0.89647 0.91032 0.89220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.44 13.96 21.44 0.30 -56.14 16 2 C 0.02 1.03 5.47 84.65 0.46 1.49 16 3 Si 0.94 39.90 27.47 68.60 1.88 41.78 16 4 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 5 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 6 H -0.24 -9.03 6.54 99.48 0.65 -8.38 16 7 C -0.52 -27.78 9.69 25.60 0.25 -27.53 16 8 H 0.03 1.76 7.90 -2.91 -0.02 1.74 16 9 C 0.21 9.25 3.94 85.64 0.34 9.59 16 10 N -0.59 -24.55 2.44 -834.80 -2.04 -26.59 16 11 C 0.20 7.26 5.98 85.63 0.51 7.77 16 12 C -0.04 -1.67 6.90 24.83 0.17 -1.50 16 13 C -0.19 -7.70 10.40 22.19 0.23 -7.47 16 14 C -0.23 -8.44 10.91 22.19 0.24 -8.20 16 15 C -0.05 -1.74 12.09 66.97 0.81 -0.93 16 16 O -0.19 -7.92 10.65 -2.56 -0.03 -7.94 16 17 C 0.55 23.34 7.47 86.57 0.65 23.99 16 18 O -0.57 -25.64 12.80 -4.10 -0.05 -25.69 16 19 C -0.24 -9.37 8.76 23.43 0.21 -9.16 16 20 C -0.02 -0.78 5.38 -17.26 -0.09 -0.87 16 21 C -0.12 -3.57 5.32 30.25 0.16 -3.41 16 22 C -0.11 -2.46 5.95 30.80 0.18 -2.28 16 23 C -0.12 -2.15 5.81 30.57 0.18 -1.98 16 24 C -0.11 -2.16 5.94 30.66 0.18 -1.98 16 25 C -0.09 -2.38 6.04 30.10 0.18 -2.20 16 26 H 0.26 14.87 8.31 -92.70 -0.77 14.10 16 27 H 0.05 2.02 5.25 -2.39 -0.01 2.01 16 28 H 0.05 1.96 7.32 -2.39 -0.02 1.94 16 29 H 0.10 3.35 7.42 -2.39 -0.02 3.33 16 30 H 0.13 3.91 7.89 -2.39 -0.02 3.89 16 31 H 0.14 5.77 8.06 -2.91 -0.02 5.75 16 32 H 0.16 5.05 8.06 -2.91 -0.02 5.02 16 33 H 0.24 5.62 8.06 -2.91 -0.02 5.60 16 34 H 0.12 5.03 6.26 -2.91 -0.02 5.01 16 35 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.10 3.45 4.79 -17.31 -0.08 3.36 16 37 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 41 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.07 1.87 7.92 -2.39 -0.02 1.85 16 44 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -69.78 356.51 5.59 -64.19 By element: Atomic # 1 Polarization: 34.19 SS G_CDS: 0.86 Total: 35.05 kcal Atomic # 6 Polarization: -29.33 SS G_CDS: 4.66 Total: -24.67 kcal Atomic # 7 Polarization: -80.99 SS G_CDS: -1.74 Total: -82.73 kcal Atomic # 8 Polarization: -33.55 SS G_CDS: -0.08 Total: -33.63 kcal Atomic # 14 Polarization: 39.90 SS G_CDS: 1.88 Total: 41.78 kcal Total: -69.78 5.59 -64.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299556362.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.986 kcal (2) G-P(sol) polarization free energy of solvation -69.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds