Wall clock time and date at job start Tue Mar 31 2020 07:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86798 * 120.00037 * 2 1 4 4 H 1.48503 * 109.47375 * 240.00380 * 3 2 1 5 5 H 1.48501 * 109.47080 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47243 * 120.00336 * 3 2 1 7 7 C 1.39946 * 120.00163 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00561 * 163.71658 * 7 2 1 9 9 C 1.41394 * 119.99749 * 343.71692 * 7 2 1 10 10 C 1.40738 * 120.24803 * 334.18460 * 9 7 2 11 11 C 1.37599 * 119.74752 * 180.31889 * 10 9 7 12 12 C 1.38651 * 120.24631 * 359.66724 * 11 10 9 13 13 C 1.38620 * 120.50566 * 0.02562 * 12 11 10 14 14 C 1.37637 * 120.24302 * 0.02747 * 13 12 11 15 15 C 1.50703 * 120.12419 * 179.97438 * 14 13 12 16 16 C 1.50697 * 109.47125 * 264.99549 * 15 14 13 17 17 O 1.21283 * 120.00034 * 0.02562 * 16 15 14 18 18 N 1.34772 * 120.00226 * 179.97438 * 16 15 14 19 19 C 1.46925 * 120.62856 * 0.02562 * 18 16 15 20 20 C 1.53196 * 108.77801 * 233.60493 * 19 18 16 21 21 C 1.53038 * 109.31304 * 305.37035 * 20 19 18 22 22 C 1.53035 * 109.54269 * 61.35962 * 21 20 19 23 23 H 1.09000 * 109.49397 * 58.58741 * 22 21 20 24 24 C 1.53000 * 109.50210 * 178.68304 * 22 21 20 25 25 O 1.42895 * 109.47390 * 184.99737 * 24 22 21 26 26 C 1.46923 * 120.63282 * 180.02562 * 18 16 15 27 27 H 0.96994 * 119.99672 * 359.97438 * 1 2 3 28 28 H 1.07998 * 120.12324 * 0.02562 * 10 9 7 29 29 H 1.07998 * 119.87778 * 179.68021 * 11 10 9 30 30 H 1.08004 * 119.75129 * 180.02562 * 12 11 10 31 31 H 1.07995 * 119.87557 * 180.02562 * 13 12 11 32 32 H 1.09002 * 109.47099 * 144.99516 * 15 14 13 33 33 H 1.08999 * 109.47045 * 25.00168 * 15 14 13 34 34 H 1.08999 * 109.58584 * 113.81860 * 19 18 16 35 35 H 1.08995 * 109.58836 * 353.39376 * 19 18 16 36 36 H 1.08998 * 109.49605 * 185.41540 * 20 19 18 37 37 H 1.08997 * 109.49486 * 65.31851 * 20 19 18 38 38 H 1.09007 * 109.45617 * 301.34252 * 21 20 19 39 39 H 1.09001 * 109.44727 * 181.38097 * 21 20 19 40 40 H 1.08998 * 109.47075 * 305.00606 * 24 22 21 41 41 H 1.09008 * 109.46754 * 65.00481 * 24 22 21 42 42 H 0.96703 * 114.00238 * 179.97438 * 25 24 22 43 43 H 1.08997 * 109.58666 * 6.60603 * 26 18 16 44 44 H 1.09001 * 109.58547 * 246.17932 * 26 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6965 -1.2126 5 1 1.2773 2.7464 0.0006 6 1 3.0961 1.6964 1.2125 7 6 2.0080 -1.2120 -0.0005 8 1 3.0555 -1.2307 -0.2628 9 6 1.3436 -2.4120 0.3423 10 6 0.2102 -2.3816 1.1760 11 6 -0.4246 -3.5563 1.5084 12 6 0.0443 -4.7661 1.0196 13 6 1.1559 -4.8075 0.1925 14 6 1.8072 -3.6450 -0.1522 15 6 3.0158 -3.6931 -1.0511 16 6 4.2663 -3.7191 -0.2106 17 8 4.1843 -3.7009 0.9993 18 7 5.4759 -3.7637 -0.8033 19 6 5.5915 -3.7869 -2.2678 20 6 6.4525 -4.9866 -2.6756 21 6 7.7930 -4.9208 -1.9403 22 6 7.5526 -4.9897 -0.4305 23 1 7.0274 -5.9135 -0.1876 24 6 8.8952 -4.9570 0.3025 25 8 8.6778 -5.1382 1.7031 26 6 6.7040 -3.7901 0.0027 27 1 -0.4849 0.8400 0.0004 28 1 -0.1571 -1.4403 1.5574 29 1 -1.2914 -3.5359 2.1523 30 1 -0.4603 -5.6833 1.2853 31 1 1.5122 -5.7554 -0.1828 32 1 3.0272 -2.8116 -1.6922 33 1 2.9741 -4.5906 -1.6683 34 1 6.0619 -2.8658 -2.6118 35 1 4.6002 -3.8810 -2.7111 36 1 6.6259 -4.9609 -3.7514 37 1 5.9377 -5.9103 -2.4116 38 1 8.2961 -3.9854 -2.1855 39 1 8.4170 -5.7601 -2.2474 40 1 9.5336 -5.7568 -0.0727 41 1 9.3791 -3.9953 0.1315 42 1 9.4877 -5.1288 2.2314 43 1 6.4468 -3.8863 1.0575 44 1 7.2652 -2.8692 -0.1562 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000305787212.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:12 Heat of formation + Delta-G solvation = -79.743849 kcal Electronic energy + Delta-G solvation = -25193.478477 eV Core-core repulsion = 21688.638423 eV Total energy + Delta-G solvation = -3504.840054 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.89882 -38.06326 -37.10557 -36.22407 -33.55628 -33.03995 -31.74332 -31.16382 -29.38387 -27.27969 -25.78876 -25.25306 -24.42582 -22.15901 -20.89597 -20.66183 -19.73153 -18.39480 -17.45500 -17.08389 -16.58404 -15.88368 -15.42487 -14.97534 -14.86830 -14.40310 -14.22382 -14.02387 -13.75456 -13.51144 -13.42638 -12.84984 -12.68777 -12.57781 -12.44491 -11.89045 -11.60224 -11.50888 -11.20824 -11.15409 -11.05491 -10.93875 -10.89867 -10.72135 -10.62938 -10.53230 -10.34635 -10.14982 -9.41653 -9.29154 -9.09681 -9.01503 -8.24822 -7.23944 -7.21834 -6.67272 -4.27590 2.85381 3.02936 3.09625 3.13596 3.33636 3.39763 3.49642 3.98713 3.99798 4.64996 4.70290 4.72237 4.84610 4.90965 5.09280 5.29606 5.35194 5.40007 5.45487 5.50056 5.60394 5.75939 5.79126 5.85194 5.89972 5.99165 6.05783 6.14711 6.27675 6.32519 6.35181 6.48970 6.57802 6.84814 6.93227 7.15158 7.36646 7.47795 7.49358 7.70653 7.89248 8.00770 8.14532 8.19913 8.38629 8.71593 8.93354 8.98678 9.08710 10.26878 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.013903 B = 0.004555 C = 0.004002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.463521 B = 6145.450821 C = 6995.061899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.077 3.923 3 Si 0.903 3.097 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.456 4.456 8 H 0.073 0.927 9 C 0.129 3.871 10 C -0.159 4.159 11 C -0.108 4.108 12 C -0.239 4.239 13 C -0.081 4.081 14 C -0.181 4.181 15 C -0.068 4.068 16 C 0.518 3.482 17 O -0.518 6.518 18 N -0.627 5.627 19 C 0.107 3.893 20 C -0.134 4.134 21 C -0.111 4.111 22 C -0.103 4.103 23 H 0.081 0.919 24 C 0.084 3.916 25 O -0.568 6.568 26 C 0.122 3.878 27 H 0.279 0.721 28 H 0.117 0.883 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.045 0.955 41 H 0.046 0.954 42 H 0.377 0.623 43 H 0.097 0.903 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.526 -6.135 -6.305 17.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.140 4.140 3 Si 0.727 3.273 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.486 4.486 8 H 0.091 0.909 9 C 0.127 3.873 10 C -0.178 4.178 11 C -0.126 4.126 12 C -0.259 4.259 13 C -0.100 4.100 14 C -0.183 4.183 15 C -0.108 4.108 16 C 0.307 3.693 17 O -0.391 6.391 18 N -0.363 5.363 19 C -0.016 4.016 20 C -0.172 4.172 21 C -0.149 4.149 22 C -0.123 4.123 23 H 0.099 0.901 24 C 0.005 3.995 25 O -0.373 6.373 26 C -0.001 4.001 27 H 0.090 0.910 28 H 0.135 0.865 29 H 0.104 0.896 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.113 0.887 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.108 0.892 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.224 0.776 43 H 0.116 0.884 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 14.609 -5.972 -5.844 16.830 hybrid contribution 1.068 0.790 0.055 1.330 sum 15.677 -5.181 -5.788 17.496 Atomic orbital electron populations 1.69815 1.07429 1.29065 1.35898 1.25863 0.94681 1.01043 0.92383 0.86463 0.80223 0.80653 0.79933 1.19132 1.20353 1.18914 1.19432 0.97103 0.90976 1.41078 0.90900 1.17326 0.90756 0.91252 0.87968 1.21291 0.99003 0.96648 1.00888 1.20668 0.98697 0.93474 0.99771 1.20297 1.01592 0.96131 1.07831 1.20291 0.95954 0.95492 0.98232 1.19089 0.99288 0.94056 1.05819 1.20284 0.90607 1.02427 0.97469 1.21244 0.84111 0.74710 0.89235 1.90676 1.86231 1.47506 1.14735 1.48238 1.05945 1.75928 1.06231 1.21684 1.01347 0.97782 0.80827 1.21909 0.95946 0.99341 1.00006 1.21484 0.97559 1.02091 0.93748 1.21534 0.95384 1.00784 0.94560 0.90087 1.22161 0.96500 0.99265 0.81540 1.86575 1.36291 1.96244 1.18223 1.21422 0.84894 0.95929 0.97827 0.90976 0.86535 0.89616 0.89712 0.89846 0.88691 0.90779 0.91730 0.89206 0.90650 0.91348 0.91631 0.91775 0.93651 0.93586 0.77635 0.88440 0.92518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.94 10.95 55.55 0.61 -20.33 16 2 C 0.08 1.99 5.16 -17.34 -0.09 1.90 16 3 Si 0.90 19.33 29.59 -169.99 -5.03 14.30 16 4 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 5 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 6 H -0.26 -5.77 7.11 56.52 0.40 -5.37 16 7 C -0.46 -12.34 8.14 -37.74 -0.31 -12.64 16 8 H 0.07 1.93 6.67 -52.49 -0.35 1.58 16 9 C 0.13 3.56 5.56 -106.82 -0.59 2.97 16 10 C -0.16 -4.37 8.69 -38.87 -0.34 -4.71 16 11 C -0.11 -2.71 10.02 -39.66 -0.40 -3.10 16 12 C -0.24 -5.76 10.05 -39.29 -0.39 -6.15 16 13 C -0.08 -1.95 9.66 -39.66 -0.38 -2.33 16 14 C -0.18 -4.51 4.43 -103.91 -0.46 -4.97 16 15 C -0.07 -1.40 3.53 -29.03 -0.10 -1.50 16 16 C 0.52 10.82 7.31 -10.99 -0.08 10.74 16 17 O -0.52 -13.24 15.45 5.56 0.09 -13.15 16 18 N -0.63 -10.18 2.97 -172.77 -0.51 -10.70 16 19 C 0.11 1.29 6.34 -3.71 -0.02 1.26 16 20 C -0.13 -1.26 6.08 -26.61 -0.16 -1.42 16 21 C -0.11 -0.99 5.17 -26.69 -0.14 -1.13 16 22 C -0.10 -1.19 2.58 -90.50 -0.23 -1.42 16 23 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 24 C 0.08 0.79 6.43 37.16 0.24 1.03 16 25 O -0.57 -6.38 13.31 -35.23 -0.47 -6.85 16 26 C 0.12 1.83 5.55 -3.71 -0.02 1.81 16 27 H 0.28 6.72 8.30 -40.82 -0.34 6.38 16 28 H 0.12 3.28 6.20 -52.49 -0.33 2.95 16 29 H 0.09 1.93 8.06 -52.49 -0.42 1.50 16 30 H 0.08 1.81 8.06 -52.48 -0.42 1.39 16 31 H 0.08 1.77 8.06 -52.49 -0.42 1.34 16 32 H 0.10 1.91 6.88 -51.93 -0.36 1.55 16 33 H 0.07 1.28 7.60 -51.93 -0.39 0.89 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.09 1.05 5.93 -51.93 -0.31 0.74 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 41 H 0.05 0.38 8.14 -51.92 -0.42 -0.04 16 42 H 0.38 2.33 9.12 45.56 0.42 2.75 16 43 H 0.10 1.80 6.85 -51.93 -0.36 1.44 16 44 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 353.30 15.07 5.32 5.32 Total: -1.00 -33.30 353.30 -9.36 -42.66 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -5.88 Total: 8.41 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: -3.49 Total: -19.67 kcal Atomic # 7 Polarization: -31.12 SS G_CDS: 0.10 Total: -31.02 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: -0.38 Total: -20.00 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.03 Total: 14.30 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.30 -9.36 -42.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305787212.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.084 kcal (2) G-P(sol) polarization free energy of solvation -33.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds