Wall clock time and date at job start Tue Mar 31 2020 07:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86798 * 120.00037 * 2 1 4 4 H 1.48503 * 109.47375 * 240.00380 * 3 2 1 5 5 H 1.48501 * 109.47080 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47243 * 120.00336 * 3 2 1 7 7 C 1.39946 * 120.00163 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00561 * 163.71658 * 7 2 1 9 9 C 1.41394 * 119.99749 * 343.71692 * 7 2 1 10 10 C 1.40738 * 120.24803 * 334.18460 * 9 7 2 11 11 C 1.37599 * 119.74752 * 180.31889 * 10 9 7 12 12 C 1.38651 * 120.24631 * 359.66724 * 11 10 9 13 13 C 1.38620 * 120.50566 * 0.02562 * 12 11 10 14 14 C 1.37637 * 120.24302 * 0.02747 * 13 12 11 15 15 C 1.50703 * 120.12419 * 179.97438 * 14 13 12 16 16 C 1.50697 * 109.47125 * 264.99549 * 15 14 13 17 17 O 1.21283 * 120.00034 * 0.02562 * 16 15 14 18 18 N 1.34772 * 120.00226 * 179.97438 * 16 15 14 19 19 C 1.46925 * 120.62856 * 0.02562 * 18 16 15 20 20 C 1.53196 * 108.77801 * 233.60493 * 19 18 16 21 21 C 1.53038 * 109.31304 * 305.37035 * 20 19 18 22 22 C 1.53035 * 109.54269 * 61.35962 * 21 20 19 23 23 H 1.09000 * 109.49397 * 58.58741 * 22 21 20 24 24 C 1.53000 * 109.50210 * 178.68304 * 22 21 20 25 25 O 1.42895 * 109.47390 * 184.99737 * 24 22 21 26 26 C 1.46923 * 120.63282 * 180.02562 * 18 16 15 27 27 H 0.96994 * 119.99672 * 359.97438 * 1 2 3 28 28 H 1.07998 * 120.12324 * 0.02562 * 10 9 7 29 29 H 1.07998 * 119.87778 * 179.68021 * 11 10 9 30 30 H 1.08004 * 119.75129 * 180.02562 * 12 11 10 31 31 H 1.07995 * 119.87557 * 180.02562 * 13 12 11 32 32 H 1.09002 * 109.47099 * 144.99516 * 15 14 13 33 33 H 1.08999 * 109.47045 * 25.00168 * 15 14 13 34 34 H 1.08999 * 109.58584 * 113.81860 * 19 18 16 35 35 H 1.08995 * 109.58836 * 353.39376 * 19 18 16 36 36 H 1.08998 * 109.49605 * 185.41540 * 20 19 18 37 37 H 1.08997 * 109.49486 * 65.31851 * 20 19 18 38 38 H 1.09007 * 109.45617 * 301.34252 * 21 20 19 39 39 H 1.09001 * 109.44727 * 181.38097 * 21 20 19 40 40 H 1.08998 * 109.47075 * 305.00606 * 24 22 21 41 41 H 1.09008 * 109.46754 * 65.00481 * 24 22 21 42 42 H 0.96703 * 114.00238 * 179.97438 * 25 24 22 43 43 H 1.08997 * 109.58666 * 6.60603 * 26 18 16 44 44 H 1.09001 * 109.58547 * 246.17932 * 26 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6965 -1.2126 5 1 1.2773 2.7464 0.0006 6 1 3.0961 1.6964 1.2125 7 6 2.0080 -1.2120 -0.0005 8 1 3.0555 -1.2307 -0.2628 9 6 1.3436 -2.4120 0.3423 10 6 0.2102 -2.3816 1.1760 11 6 -0.4246 -3.5563 1.5084 12 6 0.0443 -4.7661 1.0196 13 6 1.1559 -4.8075 0.1925 14 6 1.8072 -3.6450 -0.1522 15 6 3.0158 -3.6931 -1.0511 16 6 4.2663 -3.7191 -0.2106 17 8 4.1843 -3.7009 0.9993 18 7 5.4759 -3.7637 -0.8033 19 6 5.5915 -3.7869 -2.2678 20 6 6.4525 -4.9866 -2.6756 21 6 7.7930 -4.9208 -1.9403 22 6 7.5526 -4.9897 -0.4305 23 1 7.0274 -5.9135 -0.1876 24 6 8.8952 -4.9570 0.3025 25 8 8.6778 -5.1382 1.7031 26 6 6.7040 -3.7901 0.0027 27 1 -0.4849 0.8400 0.0004 28 1 -0.1571 -1.4403 1.5574 29 1 -1.2914 -3.5359 2.1523 30 1 -0.4603 -5.6833 1.2853 31 1 1.5122 -5.7554 -0.1828 32 1 3.0272 -2.8116 -1.6922 33 1 2.9741 -4.5906 -1.6683 34 1 6.0619 -2.8658 -2.6118 35 1 4.6002 -3.8810 -2.7111 36 1 6.6259 -4.9609 -3.7514 37 1 5.9377 -5.9103 -2.4116 38 1 8.2961 -3.9854 -2.1855 39 1 8.4170 -5.7601 -2.2474 40 1 9.5336 -5.7568 -0.0727 41 1 9.3791 -3.9953 0.1315 42 1 9.4877 -5.1288 2.2314 43 1 6.4468 -3.8863 1.0575 44 1 7.2652 -2.8692 -0.1562 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000305787212.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:11 Heat of formation + Delta-G solvation = -101.810832 kcal Electronic energy + Delta-G solvation = -25194.435373 eV Core-core repulsion = 21688.638423 eV Total energy + Delta-G solvation = -3505.796950 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.25684 -39.55706 -38.60265 -37.27227 -35.50750 -34.27188 -33.29200 -32.28827 -31.34880 -28.92288 -27.14365 -26.59353 -25.86147 -23.05662 -22.83682 -22.09744 -21.08860 -19.80949 -19.04229 -18.25399 -18.00685 -17.32895 -16.99535 -16.40119 -16.24554 -15.89263 -15.47514 -15.28583 -15.03105 -14.96435 -14.56375 -14.38704 -14.13625 -13.88724 -13.69307 -13.49251 -13.36232 -12.93156 -12.78600 -12.72990 -12.62079 -12.49756 -12.12275 -12.06504 -11.85603 -11.60023 -11.48671 -11.33230 -11.19715 -11.03434 -10.90329 -10.66541 -9.54588 -9.23478 -9.16637 -8.59831 -6.30033 0.99049 1.12471 1.33911 1.44550 1.53128 1.80769 2.16114 2.19282 2.77616 3.30860 3.65516 3.79576 3.88844 3.95988 4.10323 4.16077 4.27025 4.36261 4.39163 4.47854 4.55351 4.58392 4.63179 4.69185 4.71997 4.74670 4.76469 4.91358 4.93604 5.03456 5.13713 5.14875 5.18710 5.24910 5.35894 5.45549 5.54059 5.68702 5.76578 6.02924 6.15645 6.20306 6.41487 6.50775 6.72865 6.94517 6.98723 7.10434 7.38389 8.36583 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.013903 B = 0.004555 C = 0.004002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.463521 B = 6145.450821 C = 6995.061899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.037 3.963 3 Si 0.970 3.030 4 H -0.252 1.252 5 H -0.264 1.264 6 H -0.273 1.273 7 C -0.483 4.483 8 H 0.067 0.933 9 C 0.096 3.904 10 C -0.193 4.193 11 C -0.117 4.117 12 C -0.242 4.242 13 C -0.093 4.093 14 C -0.190 4.190 15 C -0.062 4.062 16 C 0.514 3.486 17 O -0.580 6.580 18 N -0.619 5.619 19 C 0.095 3.905 20 C -0.128 4.128 21 C -0.106 4.106 22 C -0.098 4.098 23 H 0.056 0.944 24 C 0.083 3.917 25 O -0.601 6.601 26 C 0.119 3.881 27 H 0.286 0.714 28 H 0.098 0.902 29 H 0.107 0.893 30 H 0.116 0.884 31 H 0.114 0.886 32 H 0.096 0.904 33 H 0.108 0.892 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.108 0.892 37 H 0.058 0.942 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.072 0.928 41 H 0.062 0.938 42 H 0.396 0.604 43 H 0.053 0.947 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.817 -6.766 -8.637 20.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.177 4.177 3 Si 0.792 3.208 4 H -0.176 1.176 5 H -0.188 1.188 6 H -0.199 1.199 7 C -0.513 4.513 8 H 0.085 0.915 9 C 0.094 3.906 10 C -0.213 4.213 11 C -0.135 4.135 12 C -0.261 4.261 13 C -0.111 4.111 14 C -0.192 4.192 15 C -0.102 4.102 16 C 0.304 3.696 17 O -0.459 6.459 18 N -0.353 5.353 19 C -0.027 4.027 20 C -0.166 4.166 21 C -0.143 4.143 22 C -0.118 4.118 23 H 0.074 0.926 24 C 0.005 3.995 25 O -0.410 6.410 26 C -0.003 4.003 27 H 0.097 0.903 28 H 0.116 0.884 29 H 0.125 0.875 30 H 0.134 0.866 31 H 0.132 0.868 32 H 0.114 0.886 33 H 0.126 0.874 34 H 0.100 0.900 35 H 0.111 0.889 36 H 0.126 0.874 37 H 0.077 0.923 38 H 0.099 0.901 39 H 0.107 0.893 40 H 0.090 0.910 41 H 0.080 0.920 42 H 0.246 0.754 43 H 0.071 0.929 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 16.941 -6.622 -8.230 19.965 hybrid contribution 0.368 0.889 0.786 1.242 sum 17.309 -5.733 -7.444 19.695 Atomic orbital electron populations 1.69871 1.08745 1.30301 1.36201 1.26651 0.95446 1.04086 0.91529 0.85436 0.79023 0.76528 0.79856 1.17579 1.18798 1.19868 1.19558 0.96939 0.92032 1.42751 0.91466 1.17729 0.91380 0.92755 0.88730 1.21308 1.00501 0.96858 1.02607 1.20952 0.99259 0.93332 1.00003 1.20710 1.01555 0.96812 1.07040 1.20722 0.95815 0.96517 0.98026 1.19588 1.00379 0.93584 1.05603 1.20254 0.89001 1.04054 0.96860 1.21257 0.85590 0.74392 0.88407 1.90647 1.87269 1.50860 1.17111 1.48284 1.04911 1.73728 1.08370 1.22085 1.02633 1.00192 0.77776 1.21908 0.95471 0.97247 1.01978 1.21499 0.97731 1.04031 0.91032 1.21518 0.95605 0.97467 0.97166 0.92586 1.22262 0.95473 1.01162 0.80607 1.86534 1.38426 1.96412 1.19601 1.21501 0.84855 0.98494 0.95466 0.90292 0.88420 0.87540 0.86641 0.86825 0.88575 0.87358 0.89964 0.88939 0.87366 0.92279 0.90055 0.89254 0.90976 0.91978 0.75398 0.92860 0.91139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.71 10.95 21.83 0.24 -44.47 16 2 C 0.04 1.97 5.16 85.26 0.44 2.41 16 3 Si 0.97 40.18 29.59 68.60 2.03 42.21 16 4 H -0.25 -9.75 7.11 99.48 0.71 -9.05 16 5 H -0.26 -10.19 7.11 99.48 0.71 -9.49 16 6 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 7 C -0.48 -27.12 8.14 23.46 0.19 -26.93 16 8 H 0.07 3.71 6.67 -2.91 -0.02 3.69 16 9 C 0.10 5.51 5.56 -21.29 -0.12 5.39 16 10 C -0.19 -11.09 8.69 22.73 0.20 -10.89 16 11 C -0.12 -6.00 10.02 22.22 0.22 -5.78 16 12 C -0.24 -11.52 10.05 22.46 0.23 -11.30 16 13 C -0.09 -4.40 9.66 22.22 0.21 -4.19 16 14 C -0.19 -9.63 4.43 -19.40 -0.09 -9.71 16 15 C -0.06 -2.55 3.53 29.10 0.10 -2.45 16 16 C 0.51 21.90 7.31 87.66 0.64 22.54 16 17 O -0.58 -31.14 15.45 -3.04 -0.05 -31.19 16 18 N -0.62 -19.83 2.97 -818.91 -2.43 -22.26 16 19 C 0.09 2.04 6.34 86.36 0.55 2.59 16 20 C -0.13 -1.94 6.08 30.67 0.19 -1.75 16 21 C -0.11 -1.46 5.17 30.62 0.16 -1.31 16 22 C -0.10 -2.11 2.58 -10.72 -0.03 -2.13 16 23 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 24 C 0.08 1.38 6.43 71.98 0.46 1.84 16 25 O -0.60 -13.14 13.31 -148.98 -1.98 -15.13 16 26 C 0.12 3.57 5.55 86.36 0.48 4.05 16 27 H 0.29 14.09 8.30 -92.71 -0.77 13.32 16 28 H 0.10 5.83 6.20 -2.91 -0.02 5.81 16 29 H 0.11 4.83 8.06 -2.91 -0.02 4.80 16 30 H 0.12 4.70 8.06 -2.91 -0.02 4.67 16 31 H 0.11 4.60 8.06 -2.91 -0.02 4.58 16 32 H 0.10 3.88 6.88 -2.39 -0.02 3.87 16 33 H 0.11 3.57 7.60 -2.39 -0.02 3.56 16 34 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.09 1.94 5.93 -2.39 -0.01 1.93 16 36 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.08 0.93 8.14 -2.38 -0.02 0.92 16 39 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 42 H 0.40 4.53 9.12 -74.06 -0.68 3.85 16 43 H 0.05 2.08 6.85 -2.39 -0.02 2.06 16 44 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -77.46 353.30 1.97 -75.49 By element: Atomic # 1 Polarization: 32.62 SS G_CDS: 0.33 Total: 32.95 kcal Atomic # 6 Polarization: -41.44 SS G_CDS: 3.84 Total: -37.60 kcal Atomic # 7 Polarization: -64.54 SS G_CDS: -2.19 Total: -66.73 kcal Atomic # 8 Polarization: -44.28 SS G_CDS: -2.03 Total: -46.31 kcal Atomic # 14 Polarization: 40.18 SS G_CDS: 2.03 Total: 42.21 kcal Total: -77.46 1.97 -75.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305787212.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.318 kcal (2) G-P(sol) polarization free energy of solvation -77.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds