Wall clock time and date at job start Tue Mar 31 2020 07:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86804 * 120.00386 * 2 1 4 4 H 1.48503 * 109.46979 * 270.00254 * 3 2 1 5 5 H 1.48507 * 109.46759 * 29.99855 * 3 2 1 6 6 H 1.48492 * 109.47390 * 149.99881 * 3 2 1 7 7 C 1.39949 * 119.99763 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99538 * 163.37351 * 7 2 1 9 9 C 1.41393 * 119.99900 * 343.09289 * 7 2 1 10 10 C 1.40725 * 120.24689 * 334.30696 * 9 7 2 11 11 C 1.37602 * 119.74479 * 179.78494 * 10 9 7 12 12 C 1.38651 * 120.25005 * 0.49268 * 11 10 9 13 13 C 1.38612 * 120.50055 * 359.73849 * 12 11 10 14 14 C 1.37639 * 120.25018 * 0.02562 * 13 12 11 15 15 C 1.50700 * 120.13059 * 179.97438 * 14 13 12 16 16 C 1.50700 * 109.46808 * 265.01589 * 15 14 13 17 17 O 1.21287 * 120.00256 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99952 * 179.97438 * 16 15 14 19 19 C 1.46926 * 120.62977 * 359.73042 * 18 16 15 20 20 C 1.53622 * 108.54344 * 126.36496 * 19 18 16 21 21 C 1.53041 * 109.24200 * 54.85757 * 20 19 18 22 22 C 1.53045 * 109.53514 * 298.50909 * 21 20 19 23 23 H 1.09004 * 109.49734 * 301.41262 * 22 21 20 24 24 C 1.53004 * 109.52148 * 181.33388 * 22 21 20 25 25 O 1.42902 * 109.46668 * 175.14021 * 24 22 21 26 26 C 1.46930 * 120.62962 * 180.02562 * 18 16 15 27 27 H 0.97002 * 119.99597 * 359.97438 * 1 2 3 28 28 H 1.08004 * 120.12930 * 359.97438 * 10 9 7 29 29 H 1.08004 * 119.87437 * 180.25402 * 11 10 9 30 30 H 1.08003 * 119.75319 * 179.71302 * 12 11 10 31 31 H 1.08000 * 119.88281 * 180.02562 * 13 12 11 32 32 H 1.08991 * 109.47215 * 25.02004 * 15 14 13 33 33 H 1.09000 * 109.47306 * 145.02620 * 15 14 13 34 34 H 1.08998 * 109.58455 * 246.19686 * 19 18 16 35 35 H 1.08997 * 109.58623 * 6.62108 * 19 18 16 36 36 H 1.08993 * 109.63365 * 294.86204 * 20 19 18 37 37 H 1.09006 * 109.42671 * 174.72401 * 20 19 18 38 38 H 1.08998 * 109.45988 * 178.49280 * 21 20 19 39 39 H 1.08996 * 109.45282 * 58.52377 * 21 20 19 40 40 H 1.08993 * 109.46932 * 295.14593 * 24 22 21 41 41 H 1.09008 * 109.46781 * 55.14978 * 24 22 21 42 42 H 0.96703 * 113.99359 * 179.97438 * 25 24 22 43 43 H 1.09000 * 109.58762 * 353.37731 * 26 18 16 44 44 H 1.09001 * 109.58323 * 113.66447 * 26 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.4898 2.0464 -1.4001 5 1 1.4398 2.6527 0.7001 6 1 3.5398 1.4401 0.7000 7 6 2.0079 -1.2120 -0.0005 8 1 3.0541 -1.2314 -0.2682 9 6 1.3467 -2.4102 0.3550 10 6 0.2198 -2.3749 1.1971 11 6 -0.4184 -3.5468 1.5330 12 6 0.0509 -4.7600 1.0533 13 6 1.1629 -4.8072 0.2271 14 6 1.8142 -3.6471 -0.1258 15 6 3.0233 -3.7016 -1.0238 16 6 4.2733 -3.7216 -0.1823 17 8 4.1906 -3.6948 1.0274 18 7 5.4832 -3.7703 -0.7741 19 6 5.5994 -3.8103 -2.2382 20 6 6.5314 -2.6740 -2.6856 21 6 7.8657 -2.7954 -1.9461 22 6 7.6303 -2.6600 -0.4399 23 1 7.1620 -1.6983 -0.2299 24 6 8.9684 -2.7482 0.2967 25 8 8.7615 -2.5090 1.6903 26 6 6.7110 -3.7910 0.0328 27 1 -0.4850 0.8401 0.0004 28 1 -0.1446 -1.4314 1.5759 29 1 -1.2859 -3.5217 2.1758 30 1 -0.4534 -5.6754 1.3258 31 1 1.5197 -5.7577 -0.1412 32 1 2.9819 -4.6033 -1.6346 33 1 3.0350 -2.8245 -1.6709 34 1 6.0150 -4.7699 -2.5457 35 1 4.6151 -3.6755 -2.6867 36 1 6.0734 -1.7123 -2.4544 37 1 6.7027 -2.7471 -3.7596 38 1 8.5394 -2.0065 -2.2806 39 1 8.3111 -3.7673 -2.1581 40 1 9.3948 -3.7416 0.1578 41 1 9.6530 -1.9997 -0.1026 42 1 9.5693 -2.5498 2.2205 43 1 6.4603 -3.6434 1.0833 44 1 7.2139 -4.7500 -0.0917 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000305787213.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:16 Heat of formation + Delta-G solvation = -79.676246 kcal Electronic energy + Delta-G solvation = -25352.416750 eV Core-core repulsion = 21847.579628 eV Total energy + Delta-G solvation = -3504.837122 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.87479 -38.03890 -37.09360 -36.18986 -33.55668 -33.01982 -31.72191 -31.12376 -29.38695 -27.27231 -25.76352 -25.24054 -24.41783 -22.12827 -20.87364 -20.65130 -19.72497 -18.38510 -17.41635 -17.07967 -16.57349 -15.88680 -15.35440 -15.09360 -14.73680 -14.40888 -14.20613 -13.98030 -13.74010 -13.48847 -13.39612 -12.83008 -12.66377 -12.56423 -12.46737 -11.84347 -11.60887 -11.51746 -11.15269 -11.11453 -11.06179 -10.92484 -10.88080 -10.68990 -10.63745 -10.49475 -10.33736 -10.11330 -9.41199 -9.29710 -9.09184 -9.01072 -8.24329 -7.24354 -7.21646 -6.67984 -4.27059 2.84030 3.02347 3.10437 3.16958 3.32940 3.39292 3.51273 3.99177 4.04231 4.69120 4.72438 4.74814 4.88875 4.94679 5.12375 5.32312 5.36279 5.43100 5.47730 5.53337 5.61487 5.77465 5.81913 5.84420 5.95962 6.04348 6.07087 6.15211 6.32768 6.33891 6.35765 6.49099 6.57693 6.84902 6.93872 7.15139 7.36482 7.49288 7.51967 7.70672 7.89532 8.00882 8.14646 8.20033 8.38627 8.71739 8.93527 8.98811 9.08769 10.26370 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.012507 B = 0.005189 C = 0.004340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.157172 B = 5394.962707 C = 6450.589167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.078 3.922 3 Si 0.899 3.101 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.455 4.455 8 H 0.073 0.927 9 C 0.129 3.871 10 C -0.160 4.160 11 C -0.107 4.107 12 C -0.240 4.240 13 C -0.081 4.081 14 C -0.181 4.181 15 C -0.068 4.068 16 C 0.517 3.483 17 O -0.518 6.518 18 N -0.628 5.628 19 C 0.108 3.892 20 C -0.136 4.136 21 C -0.110 4.110 22 C -0.105 4.105 23 H 0.083 0.917 24 C 0.084 3.916 25 O -0.568 6.568 26 C 0.124 3.876 27 H 0.279 0.721 28 H 0.116 0.884 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.062 0.938 35 H 0.090 0.910 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.045 0.955 41 H 0.045 0.955 42 H 0.377 0.623 43 H 0.097 0.903 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.605 -3.832 -6.288 17.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.139 4.139 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.485 4.485 8 H 0.091 0.909 9 C 0.127 3.873 10 C -0.179 4.179 11 C -0.126 4.126 12 C -0.259 4.259 13 C -0.099 4.099 14 C -0.183 4.183 15 C -0.108 4.108 16 C 0.307 3.693 17 O -0.392 6.392 18 N -0.364 5.364 19 C -0.015 4.015 20 C -0.174 4.174 21 C -0.148 4.148 22 C -0.125 4.125 23 H 0.102 0.898 24 C 0.006 3.994 25 O -0.372 6.372 26 C 0.001 3.999 27 H 0.090 0.910 28 H 0.134 0.866 29 H 0.104 0.896 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.092 0.908 33 H 0.113 0.887 34 H 0.081 0.919 35 H 0.108 0.892 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.223 0.777 43 H 0.115 0.885 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 14.694 -3.591 -5.823 16.209 hybrid contribution 1.047 0.765 0.059 1.298 sum 15.741 -2.827 -5.765 17.000 Atomic orbital electron populations 1.69826 1.07449 1.28982 1.35855 1.25866 0.94663 1.01057 0.92359 0.86452 0.80961 0.81103 0.79098 1.19565 1.20076 1.18484 1.19453 0.97246 0.91027 1.40725 0.90870 1.17326 0.90732 0.91246 0.87987 1.21275 0.99093 0.96672 1.00840 1.20665 0.98632 0.93467 0.99796 1.20290 1.01607 0.96083 1.07943 1.20289 0.95939 0.95508 0.98207 1.19082 0.99268 0.94004 1.05953 1.20282 0.90615 1.02415 0.97480 1.21252 0.84130 0.74699 0.89246 1.90676 1.86235 1.47474 1.14766 1.48257 1.05923 1.75917 1.06293 1.21763 1.01053 0.97972 0.80729 1.21992 0.95617 1.00009 0.99785 1.21472 0.97603 1.01912 0.93765 1.21557 0.95082 1.01345 0.94502 0.89819 1.22156 0.96564 0.98937 0.81745 1.86595 1.36966 1.94876 1.18805 1.21411 0.84521 0.96291 0.97713 0.91030 0.86613 0.89627 0.89712 0.89835 0.90783 0.88678 0.91925 0.89183 0.90961 0.90705 0.91753 0.91773 0.93693 0.93643 0.77710 0.88469 0.92670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.96 10.98 55.55 0.61 -20.35 16 2 C 0.08 2.00 5.15 -17.34 -0.09 1.91 16 3 Si 0.90 19.41 29.59 -169.99 -5.03 14.38 16 4 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 5 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 6 H -0.26 -5.77 7.11 56.52 0.40 -5.36 16 7 C -0.45 -12.33 8.15 -37.74 -0.31 -12.64 16 8 H 0.07 1.95 6.67 -52.49 -0.35 1.60 16 9 C 0.13 3.57 5.56 -106.83 -0.59 2.97 16 10 C -0.16 -4.39 8.69 -38.87 -0.34 -4.73 16 11 C -0.11 -2.69 10.02 -39.66 -0.40 -3.09 16 12 C -0.24 -5.77 10.05 -39.29 -0.39 -6.16 16 13 C -0.08 -1.94 9.66 -39.66 -0.38 -2.32 16 14 C -0.18 -4.52 4.43 -103.91 -0.46 -4.98 16 15 C -0.07 -1.40 3.53 -29.03 -0.10 -1.50 16 16 C 0.52 10.81 7.33 -10.98 -0.08 10.73 16 17 O -0.52 -13.24 15.45 5.55 0.09 -13.16 16 18 N -0.63 -10.19 2.97 -172.48 -0.51 -10.70 16 19 C 0.11 1.30 6.37 -3.49 -0.02 1.28 16 20 C -0.14 -1.40 6.10 -26.39 -0.16 -1.56 16 21 C -0.11 -1.05 5.17 -26.69 -0.14 -1.19 16 22 C -0.11 -1.30 2.58 -90.48 -0.23 -1.54 16 23 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 24 C 0.08 0.84 6.43 37.16 0.24 1.08 16 25 O -0.57 -6.73 13.31 -35.23 -0.47 -7.20 16 26 C 0.12 1.85 5.55 -3.69 -0.02 1.83 16 27 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 28 H 0.12 3.26 6.22 -52.48 -0.33 2.94 16 29 H 0.09 1.92 8.06 -52.48 -0.42 1.50 16 30 H 0.08 1.80 8.06 -52.48 -0.42 1.38 16 31 H 0.08 1.76 8.06 -52.49 -0.42 1.34 16 32 H 0.07 1.28 7.84 -51.93 -0.41 0.87 16 33 H 0.10 1.91 6.62 -51.93 -0.34 1.57 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.09 1.07 5.93 -51.93 -0.31 0.76 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.05 0.38 8.14 -51.92 -0.42 -0.04 16 42 H 0.38 2.52 9.12 45.56 0.42 2.93 16 43 H 0.10 1.81 6.85 -51.93 -0.36 1.45 16 44 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 353.37 15.07 5.33 5.33 Total: -1.00 -33.43 353.37 -9.36 -42.79 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -5.88 Total: 8.81 kcal Atomic # 6 Polarization: -16.41 SS G_CDS: -3.48 Total: -19.89 kcal Atomic # 7 Polarization: -31.15 SS G_CDS: 0.10 Total: -31.05 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: -0.38 Total: -20.36 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.03 Total: 14.38 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.43 -9.36 -42.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305787213.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.889 kcal (2) G-P(sol) polarization free energy of solvation -33.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds