Wall clock time and date at job start Tue Mar 31 2020 08:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86800 * 119.99586 * 2 1 4 4 H 1.48496 * 109.47244 * 85.16587 * 3 2 1 5 5 H 1.48505 * 109.46889 * 205.16493 * 3 2 1 6 6 H 1.48498 * 109.47102 * 325.16293 * 3 2 1 7 7 C 1.39935 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00173 * 196.32343 * 7 2 1 9 9 C 1.41390 * 120.00553 * 16.33340 * 7 2 1 10 10 C 1.40734 * 120.24136 * 26.13013 * 9 7 2 11 11 C 1.37600 * 119.74727 * 180.02562 * 10 9 7 12 12 C 1.38656 * 120.24578 * 0.02562 * 11 10 9 13 13 C 1.38616 * 120.50363 * 0.02562 * 12 11 10 14 14 C 1.37645 * 120.24677 * 359.67032 * 13 12 11 15 15 C 1.50690 * 120.13094 * 180.32587 * 14 13 12 16 16 C 1.50700 * 109.46736 * 265.30563 * 15 14 13 17 17 O 1.21272 * 120.00391 * 359.97438 * 16 15 14 18 18 N 1.34784 * 119.99943 * 179.97438 * 16 15 14 19 19 C 1.46502 * 120.00031 * 179.97438 * 18 16 15 20 20 H 1.09003 * 109.46858 * 35.00320 * 19 18 16 21 21 C 1.52998 * 109.46739 * 155.00389 * 19 18 16 22 22 C 1.52995 * 109.47167 * 294.99950 * 21 19 18 23 23 O 1.42900 * 109.47236 * 180.02562 * 22 21 19 24 24 C 1.52998 * 109.47381 * 275.00318 * 19 18 16 25 25 C 1.52997 * 117.50070 * 128.74341 * 24 19 18 26 26 C 1.53006 * 117.49932 * 60.08392 * 24 19 18 27 27 H 0.97002 * 120.00212 * 359.97438 * 1 2 3 28 28 H 1.08000 * 120.12785 * 359.97438 * 10 9 7 29 29 H 1.08001 * 119.87778 * 179.97438 * 11 10 9 30 30 H 1.08002 * 119.74748 * 179.97438 * 12 11 10 31 31 H 1.07997 * 119.87595 * 179.97438 * 13 12 11 32 32 H 1.08999 * 109.47267 * 25.29716 * 15 14 13 33 33 H 1.08997 * 109.47545 * 145.30459 * 15 14 13 34 34 H 0.96998 * 120.00129 * 0.02562 * 18 16 15 35 35 H 1.08994 * 109.47209 * 55.00309 * 21 19 18 36 36 H 1.09003 * 109.47048 * 174.99955 * 21 19 18 37 37 H 1.09007 * 109.47490 * 299.99994 * 22 21 19 38 38 H 1.09001 * 109.47410 * 60.00524 * 22 21 19 39 39 H 0.96704 * 114.00303 * 179.97438 * 23 22 21 40 40 H 1.09004 * 115.55034 * 274.41897 * 24 19 18 41 41 H 1.08999 * 117.49779 * 0.02562 * 25 24 19 42 42 H 1.09004 * 117.49915 * 145.02339 * 25 24 19 43 43 H 1.08996 * 117.50409 * 214.98093 * 26 24 19 44 44 H 1.09005 * 117.49675 * 359.97438 * 26 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3875 2.1055 1.3950 5 1 3.5871 1.4129 -0.5954 6 1 1.4944 2.6210 -0.7998 7 6 2.0080 -1.2119 0.0005 8 1 3.0553 -1.2306 0.2634 9 6 1.3439 -2.4119 -0.3433 10 6 0.2152 -2.3817 -1.1832 11 6 -0.4236 -3.5556 -1.5109 12 6 0.0406 -4.7649 -1.0163 13 6 1.1508 -4.8065 -0.1873 14 6 1.8092 -3.6453 0.1486 15 6 3.0202 -3.6942 1.0440 16 6 2.6001 -3.4506 2.4706 17 8 1.4325 -3.2559 2.7342 18 7 3.5221 -3.4490 3.4538 19 6 3.1138 -3.2117 4.8406 20 1 2.1324 -3.6543 5.0112 21 6 4.1324 -3.8485 5.7881 22 6 4.1101 -5.3684 5.6141 23 8 5.0610 -5.9632 6.4995 24 6 3.0464 -1.7056 5.1017 25 6 1.7624 -1.1533 5.7238 26 6 2.0767 -0.8837 4.2502 27 1 -0.4850 0.8400 0.0004 28 1 -0.1488 -1.4408 -1.5686 29 1 -1.2903 -3.5349 -2.1550 30 1 -0.4671 -5.6814 -1.2783 31 1 1.5035 -5.7540 0.1925 32 1 3.4903 -4.6745 0.9662 33 1 3.7298 -2.9256 0.7379 34 1 4.4561 -3.6044 3.2430 35 1 5.1285 -3.4710 5.5577 36 1 3.8777 -3.5969 6.8177 37 1 3.1138 -5.7460 5.8446 38 1 4.3648 -5.6200 4.5846 39 1 5.1009 -6.9278 6.4434 40 1 3.9872 -1.2356 5.3884 41 1 0.9658 -1.8629 5.9475 42 1 1.8583 -0.3196 6.4195 43 1 2.3792 0.1272 3.9770 44 1 1.4871 -1.4158 3.5036 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000305863506.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:01:26 Heat of formation + Delta-G solvation = -54.021008 kcal Electronic energy + Delta-G solvation = -25346.610112 eV Core-core repulsion = 21842.885485 eV Total energy + Delta-G solvation = -3503.724628 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.65952 -37.83959 -37.04154 -36.49070 -34.11250 -33.55986 -31.83649 -30.91247 -29.41094 -27.06539 -25.72108 -24.81917 -22.01257 -21.61779 -20.97848 -20.82318 -20.02926 -19.26279 -17.59075 -17.12421 -16.38575 -15.88472 -15.46868 -15.28651 -14.97053 -14.65547 -14.36907 -14.11399 -13.56803 -13.49567 -12.97718 -12.84799 -12.54983 -12.25365 -11.73321 -11.69416 -11.58100 -11.47784 -11.28068 -11.13962 -11.05304 -10.91763 -10.76808 -10.66052 -10.38064 -10.14481 -10.01267 -9.82357 -9.45317 -9.30872 -9.10286 -8.98881 -8.50559 -7.28144 -7.26484 -6.66791 -4.27503 2.82417 2.99717 3.09029 3.12100 3.29279 3.42877 3.66111 3.93743 3.96905 4.33694 4.72620 4.88190 4.93308 5.00089 5.25253 5.34628 5.39629 5.41922 5.60123 5.66787 5.73052 5.82173 5.89939 5.96505 6.01722 6.06834 6.20535 6.31297 6.38703 6.42215 6.47527 6.55544 6.80900 6.88145 7.01876 7.15531 7.32347 7.41658 7.45873 7.68091 7.94354 8.03424 8.11302 8.16785 8.36334 8.69126 8.95744 9.02019 9.05385 10.27925 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.012620 B = 0.005449 C = 0.004220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.240815 B = 5137.302058 C = 6633.016551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.081 3.919 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.261 1.261 6 H -0.276 1.276 7 C -0.458 4.458 8 H 0.074 0.926 9 C 0.132 3.868 10 C -0.162 4.162 11 C -0.106 4.106 12 C -0.242 4.242 13 C -0.081 4.081 14 C -0.181 4.181 15 C -0.069 4.069 16 C 0.519 3.481 17 O -0.509 6.509 18 N -0.741 5.741 19 C 0.181 3.819 20 H 0.086 0.914 21 C -0.121 4.121 22 C 0.075 3.925 23 O -0.578 6.578 24 C -0.173 4.173 25 C -0.178 4.178 26 C -0.170 4.170 27 H 0.278 0.722 28 H 0.116 0.884 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.393 0.607 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.046 0.954 38 H 0.050 0.950 39 H 0.379 0.621 40 H 0.098 0.902 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.376 -5.203 8.694 13.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.136 4.136 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.185 1.185 6 H -0.201 1.201 7 C -0.487 4.487 8 H 0.092 0.908 9 C 0.129 3.871 10 C -0.182 4.182 11 C -0.124 4.124 12 C -0.262 4.262 13 C -0.099 4.099 14 C -0.183 4.183 15 C -0.109 4.109 16 C 0.307 3.693 17 O -0.382 6.382 18 N -0.395 5.395 19 C 0.076 3.924 20 H 0.104 0.896 21 C -0.159 4.159 22 C -0.003 4.003 23 O -0.383 6.383 24 C -0.193 4.193 25 C -0.215 4.215 26 C -0.206 4.206 27 H 0.089 0.911 28 H 0.134 0.866 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.090 0.910 33 H 0.109 0.891 34 H 0.226 0.774 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.225 0.775 40 H 0.116 0.884 41 H 0.110 0.890 42 H 0.105 0.895 43 H 0.102 0.898 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 7.381 -4.270 9.044 12.430 hybrid contribution 0.629 0.301 -0.113 0.706 sum 8.009 -3.969 8.931 12.636 Atomic orbital electron populations 1.69839 1.07430 1.28808 1.35293 1.25790 0.94590 1.00811 0.92451 0.86486 0.80826 0.81550 0.78999 1.19670 1.18538 1.20130 1.19419 0.97101 0.91008 1.41192 0.90789 1.17306 0.90720 0.91226 0.87831 1.21279 0.99361 0.96554 1.00977 1.20670 0.98444 0.93502 0.99806 1.20283 1.01564 0.96144 1.08165 1.20278 0.95943 0.95639 0.98055 1.18978 1.00559 0.93997 1.04756 1.20253 0.98751 1.01553 0.90368 1.21045 0.85787 0.75319 0.87173 1.90632 1.18256 1.45960 1.83374 1.46264 1.10884 1.75764 1.06566 1.20282 0.98405 0.92465 0.81214 0.89553 1.21737 1.00103 0.93424 1.00599 1.22205 0.91507 0.93794 0.92776 1.86446 1.62394 1.25052 1.64434 1.22607 0.94517 0.95013 1.07130 1.22895 0.98265 1.03009 0.97367 1.23368 1.02234 1.00621 0.94425 0.91113 0.86629 0.89704 0.89805 0.89915 0.91009 0.89087 0.77392 0.90771 0.89923 0.93572 0.93184 0.77482 0.88411 0.89030 0.89541 0.89836 0.85052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.73 10.98 55.55 0.61 -20.12 16 2 C 0.08 2.04 5.16 -17.34 -0.09 1.95 16 3 Si 0.90 18.76 29.59 -169.99 -5.03 13.73 16 4 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 5 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 6 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 7 C -0.46 -11.74 8.46 -37.75 -0.32 -12.06 16 8 H 0.07 1.80 6.36 -52.48 -0.33 1.47 16 9 C 0.13 3.44 5.56 -106.83 -0.59 2.85 16 10 C -0.16 -4.29 8.68 -38.87 -0.34 -4.63 16 11 C -0.11 -2.57 10.02 -39.66 -0.40 -2.97 16 12 C -0.24 -5.62 10.05 -39.29 -0.39 -6.01 16 13 C -0.08 -1.84 9.66 -39.66 -0.38 -2.23 16 14 C -0.18 -4.26 4.43 -103.91 -0.46 -4.72 16 15 C -0.07 -1.32 5.35 -29.04 -0.16 -1.47 16 16 C 0.52 9.85 7.16 -10.98 -0.08 9.77 16 17 O -0.51 -11.96 13.06 5.56 0.07 -11.89 16 18 N -0.74 -10.62 4.51 -53.81 -0.24 -10.86 16 19 C 0.18 2.46 2.27 -67.93 -0.15 2.31 16 20 H 0.09 1.35 7.34 -51.93 -0.38 0.97 16 21 C -0.12 -1.31 5.10 -26.73 -0.14 -1.44 16 22 C 0.07 0.76 6.93 37.16 0.26 1.02 16 23 O -0.58 -5.78 13.66 -35.23 -0.48 -6.26 16 24 C -0.17 -2.50 5.36 -90.62 -0.49 -2.98 16 25 C -0.18 -2.62 10.18 -26.70 -0.27 -2.90 16 26 C -0.17 -3.07 9.74 -26.69 -0.26 -3.33 16 27 H 0.28 6.72 8.30 -40.82 -0.34 6.38 16 28 H 0.12 3.15 6.23 -52.49 -0.33 2.82 16 29 H 0.08 1.85 8.06 -52.49 -0.42 1.43 16 30 H 0.08 1.73 8.06 -52.49 -0.42 1.31 16 31 H 0.08 1.66 8.06 -52.49 -0.42 1.23 16 32 H 0.07 1.13 8.05 -51.93 -0.42 0.71 16 33 H 0.09 1.67 6.48 -51.93 -0.34 1.33 16 34 H 0.39 4.50 8.60 -40.82 -0.35 4.15 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.05 0.49 7.75 -51.93 -0.40 0.09 16 39 H 0.38 2.12 9.12 45.56 0.42 2.53 16 40 H 0.10 1.27 8.11 -51.93 -0.42 0.85 16 41 H 0.09 1.36 8.05 -51.93 -0.42 0.94 16 42 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 43 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 44 H 0.13 2.95 5.02 -51.93 -0.26 2.69 16 LS Contribution 361.54 15.07 5.45 5.45 Total: -1.00 -31.10 361.54 -9.63 -40.74 By element: Atomic # 1 Polarization: 21.80 SS G_CDS: -5.75 Total: 16.04 kcal Atomic # 6 Polarization: -22.58 SS G_CDS: -4.26 Total: -26.84 kcal Atomic # 7 Polarization: -31.34 SS G_CDS: 0.37 Total: -30.98 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: -0.41 Total: -18.15 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.73 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.10 -9.63 -40.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305863506.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.286 kcal (2) G-P(sol) polarization free energy of solvation -31.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds