Wall clock time and date at job start Tue Mar 31 2020 08:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86800 * 119.99586 * 2 1 4 4 H 1.48496 * 109.47244 * 85.16587 * 3 2 1 5 5 H 1.48505 * 109.46889 * 205.16493 * 3 2 1 6 6 H 1.48498 * 109.47102 * 325.16293 * 3 2 1 7 7 C 1.39935 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00173 * 196.32343 * 7 2 1 9 9 C 1.41390 * 120.00553 * 16.33340 * 7 2 1 10 10 C 1.40734 * 120.24136 * 26.13013 * 9 7 2 11 11 C 1.37600 * 119.74727 * 180.02562 * 10 9 7 12 12 C 1.38656 * 120.24578 * 0.02562 * 11 10 9 13 13 C 1.38616 * 120.50363 * 0.02562 * 12 11 10 14 14 C 1.37645 * 120.24677 * 359.67032 * 13 12 11 15 15 C 1.50690 * 120.13094 * 180.32587 * 14 13 12 16 16 C 1.50700 * 109.46736 * 265.30563 * 15 14 13 17 17 O 1.21272 * 120.00391 * 359.97438 * 16 15 14 18 18 N 1.34784 * 119.99943 * 179.97438 * 16 15 14 19 19 C 1.46502 * 120.00031 * 179.97438 * 18 16 15 20 20 H 1.09003 * 109.46858 * 35.00320 * 19 18 16 21 21 C 1.52998 * 109.46739 * 155.00389 * 19 18 16 22 22 C 1.52995 * 109.47167 * 294.99950 * 21 19 18 23 23 O 1.42900 * 109.47236 * 180.02562 * 22 21 19 24 24 C 1.52998 * 109.47381 * 275.00318 * 19 18 16 25 25 C 1.52997 * 117.50070 * 128.74341 * 24 19 18 26 26 C 1.53006 * 117.49932 * 60.08392 * 24 19 18 27 27 H 0.97002 * 120.00212 * 359.97438 * 1 2 3 28 28 H 1.08000 * 120.12785 * 359.97438 * 10 9 7 29 29 H 1.08001 * 119.87778 * 179.97438 * 11 10 9 30 30 H 1.08002 * 119.74748 * 179.97438 * 12 11 10 31 31 H 1.07997 * 119.87595 * 179.97438 * 13 12 11 32 32 H 1.08999 * 109.47267 * 25.29716 * 15 14 13 33 33 H 1.08997 * 109.47545 * 145.30459 * 15 14 13 34 34 H 0.96998 * 120.00129 * 0.02562 * 18 16 15 35 35 H 1.08994 * 109.47209 * 55.00309 * 21 19 18 36 36 H 1.09003 * 109.47048 * 174.99955 * 21 19 18 37 37 H 1.09007 * 109.47490 * 299.99994 * 22 21 19 38 38 H 1.09001 * 109.47410 * 60.00524 * 22 21 19 39 39 H 0.96704 * 114.00303 * 179.97438 * 23 22 21 40 40 H 1.09004 * 115.55034 * 274.41897 * 24 19 18 41 41 H 1.08999 * 117.49779 * 0.02562 * 25 24 19 42 42 H 1.09004 * 117.49915 * 145.02339 * 25 24 19 43 43 H 1.08996 * 117.50409 * 214.98093 * 26 24 19 44 44 H 1.09005 * 117.49675 * 359.97438 * 26 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3875 2.1055 1.3950 5 1 3.5871 1.4129 -0.5954 6 1 1.4944 2.6210 -0.7998 7 6 2.0080 -1.2119 0.0005 8 1 3.0553 -1.2306 0.2634 9 6 1.3439 -2.4119 -0.3433 10 6 0.2152 -2.3817 -1.1832 11 6 -0.4236 -3.5556 -1.5109 12 6 0.0406 -4.7649 -1.0163 13 6 1.1508 -4.8065 -0.1873 14 6 1.8092 -3.6453 0.1486 15 6 3.0202 -3.6942 1.0440 16 6 2.6001 -3.4506 2.4706 17 8 1.4325 -3.2559 2.7342 18 7 3.5221 -3.4490 3.4538 19 6 3.1138 -3.2117 4.8406 20 1 2.1324 -3.6543 5.0112 21 6 4.1324 -3.8485 5.7881 22 6 4.1101 -5.3684 5.6141 23 8 5.0610 -5.9632 6.4995 24 6 3.0464 -1.7056 5.1017 25 6 1.7624 -1.1533 5.7238 26 6 2.0767 -0.8837 4.2502 27 1 -0.4850 0.8400 0.0004 28 1 -0.1488 -1.4408 -1.5686 29 1 -1.2903 -3.5349 -2.1550 30 1 -0.4671 -5.6814 -1.2783 31 1 1.5035 -5.7540 0.1925 32 1 3.4903 -4.6745 0.9662 33 1 3.7298 -2.9256 0.7379 34 1 4.4561 -3.6044 3.2430 35 1 5.1285 -3.4710 5.5577 36 1 3.8777 -3.5969 6.8177 37 1 3.1138 -5.7460 5.8446 38 1 4.3648 -5.6200 4.5846 39 1 5.1009 -6.9278 6.4434 40 1 3.9872 -1.2356 5.3884 41 1 0.9658 -1.8629 5.9475 42 1 1.8583 -0.3196 6.4195 43 1 2.3792 0.1272 3.9770 44 1 1.4871 -1.4158 3.5036 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000305863506.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:01:25 Heat of formation + Delta-G solvation = -74.269571 kcal Electronic energy + Delta-G solvation = -25347.488156 eV Core-core repulsion = 21842.885485 eV Total energy + Delta-G solvation = -3504.602671 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.05063 -39.43420 -38.28241 -37.59780 -35.44360 -35.35351 -33.45862 -32.12979 -31.29576 -28.61659 -27.12717 -26.45755 -23.26533 -22.80648 -22.60998 -22.39233 -21.28608 -20.89949 -19.04401 -18.38290 -17.73413 -17.31252 -17.06685 -16.58170 -16.24464 -16.03775 -15.75937 -15.54076 -15.23330 -14.76033 -14.46789 -14.37224 -14.21114 -13.59560 -13.27180 -13.13499 -12.93845 -12.85297 -12.76591 -12.62397 -12.51417 -12.47912 -12.22748 -12.09153 -11.98958 -11.29316 -11.28247 -11.13534 -11.06942 -10.98395 -10.87584 -10.53552 -9.82634 -9.18541 -9.13701 -8.54346 -6.22156 1.02697 1.16081 1.35403 1.46871 1.53692 1.96491 2.20946 2.36145 2.83918 3.00893 3.19783 3.79832 3.89556 3.97307 4.06839 4.15918 4.18326 4.21639 4.35554 4.43773 4.49471 4.56780 4.64179 4.71146 4.73665 4.76538 4.78762 4.83606 5.01090 5.04652 5.11163 5.15646 5.27533 5.28759 5.39684 5.48025 5.58510 5.72188 5.82546 6.07624 6.18082 6.25215 6.47194 6.76384 6.83950 6.89049 7.03671 7.16185 7.62619 8.42875 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.012620 B = 0.005449 C = 0.004220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.240815 B = 5137.302058 C = 6633.016551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.038 3.962 3 Si 0.964 3.036 4 H -0.269 1.269 5 H -0.250 1.250 6 H -0.272 1.272 7 C -0.477 4.477 8 H 0.080 0.920 9 C 0.100 3.900 10 C -0.196 4.196 11 C -0.118 4.118 12 C -0.245 4.245 13 C -0.091 4.091 14 C -0.184 4.184 15 C -0.070 4.070 16 C 0.521 3.479 17 O -0.561 6.561 18 N -0.720 5.720 19 C 0.183 3.817 20 H 0.064 0.936 21 C -0.110 4.110 22 C 0.077 3.923 23 O -0.590 6.590 24 C -0.152 4.152 25 C -0.163 4.163 26 C -0.205 4.205 27 H 0.280 0.720 28 H 0.094 0.906 29 H 0.101 0.899 30 H 0.112 0.888 31 H 0.116 0.884 32 H 0.112 0.888 33 H 0.096 0.904 34 H 0.411 0.589 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.042 0.958 38 H 0.055 0.945 39 H 0.397 0.603 40 H 0.123 0.877 41 H 0.085 0.915 42 H 0.111 0.889 43 H 0.076 0.924 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.034 -6.253 10.269 16.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.176 4.176 3 Si 0.786 3.214 4 H -0.194 1.194 5 H -0.174 1.174 6 H -0.197 1.197 7 C -0.507 4.507 8 H 0.098 0.902 9 C 0.098 3.902 10 C -0.216 4.216 11 C -0.136 4.136 12 C -0.265 4.265 13 C -0.109 4.109 14 C -0.185 4.185 15 C -0.109 4.109 16 C 0.309 3.691 17 O -0.438 6.438 18 N -0.374 5.374 19 C 0.079 3.921 20 H 0.082 0.918 21 C -0.148 4.148 22 C -0.001 4.001 23 O -0.398 6.398 24 C -0.171 4.171 25 C -0.201 4.201 26 C -0.242 4.242 27 H 0.091 0.909 28 H 0.112 0.888 29 H 0.119 0.881 30 H 0.130 0.870 31 H 0.134 0.866 32 H 0.130 0.870 33 H 0.114 0.886 34 H 0.248 0.752 35 H 0.106 0.894 36 H 0.107 0.893 37 H 0.060 0.940 38 H 0.073 0.927 39 H 0.247 0.753 40 H 0.141 0.859 41 H 0.104 0.896 42 H 0.129 0.871 43 H 0.094 0.906 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 10.096 -5.358 10.626 15.606 hybrid contribution -0.226 0.479 -0.579 0.785 sum 9.870 -4.879 10.046 14.905 Atomic orbital electron populations 1.69936 1.09081 1.29697 1.36853 1.26613 0.95207 1.04115 0.91650 0.85464 0.79813 0.77182 0.78978 1.19425 1.17366 1.19663 1.19640 0.97439 0.91654 1.41964 0.90166 1.17695 0.91226 0.92826 0.88453 1.21291 1.00946 0.96568 1.02792 1.20929 0.98957 0.93530 1.00228 1.20683 1.01689 0.96626 1.07462 1.20717 0.95705 0.96869 0.97649 1.19470 1.01579 0.93261 1.04231 1.20299 0.97078 1.03998 0.89565 1.20977 0.85508 0.74782 0.87832 1.90636 1.20576 1.48477 1.84110 1.45992 1.11125 1.74021 1.06215 1.20313 0.98522 0.92185 0.81129 0.91830 1.21622 0.99516 0.93841 0.99833 1.22118 0.91497 0.93323 0.93149 1.86390 1.62114 1.26971 1.64355 1.22751 0.95056 0.95022 1.04262 1.22963 0.98391 1.03451 0.95248 1.23085 1.05083 1.00543 0.95500 0.90914 0.88765 0.88081 0.87001 0.86615 0.87034 0.88591 0.75226 0.89395 0.89263 0.94003 0.92655 0.75285 0.85879 0.89604 0.87056 0.90577 0.89507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.99 10.98 21.82 0.24 -45.75 16 2 C 0.04 1.98 5.16 85.25 0.44 2.42 16 3 Si 0.96 39.45 29.59 68.60 2.03 41.48 16 4 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 5 H -0.25 -9.68 7.11 99.48 0.71 -8.98 16 6 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 7 C -0.48 -25.28 8.46 23.46 0.20 -25.08 16 8 H 0.08 3.97 6.36 -2.91 -0.02 3.95 16 9 C 0.10 5.41 5.56 -21.29 -0.12 5.30 16 10 C -0.20 -10.88 8.68 22.73 0.20 -10.68 16 11 C -0.12 -5.87 10.02 22.22 0.22 -5.64 16 12 C -0.25 -11.19 10.05 22.46 0.23 -10.96 16 13 C -0.09 -4.05 9.66 22.22 0.21 -3.84 16 14 C -0.18 -8.62 4.43 -19.41 -0.09 -8.71 16 15 C -0.07 -2.55 5.35 29.10 0.16 -2.39 16 16 C 0.52 19.44 7.16 87.66 0.63 20.07 16 17 O -0.56 -27.03 13.06 -3.01 -0.04 -27.07 16 18 N -0.72 -19.23 4.51 -442.53 -2.00 -21.23 16 19 C 0.18 4.65 2.27 44.99 0.10 4.75 16 20 H 0.06 1.96 7.34 -2.39 -0.02 1.94 16 21 C -0.11 -2.03 5.10 30.59 0.16 -1.87 16 22 C 0.08 1.34 6.93 71.98 0.50 1.84 16 23 O -0.59 -9.88 13.66 -148.98 -2.03 -11.91 16 24 C -0.15 -4.11 5.36 -10.79 -0.06 -4.16 16 25 C -0.16 -4.65 10.18 30.62 0.31 -4.34 16 26 C -0.20 -7.54 9.74 30.62 0.30 -7.24 16 27 H 0.28 14.33 8.30 -92.71 -0.77 13.56 16 28 H 0.09 5.49 6.23 -2.91 -0.02 5.48 16 29 H 0.10 4.51 8.06 -2.91 -0.02 4.48 16 30 H 0.11 4.38 8.06 -2.91 -0.02 4.36 16 31 H 0.12 4.29 8.06 -2.91 -0.02 4.27 16 32 H 0.11 3.12 8.05 -2.39 -0.02 3.10 16 33 H 0.10 3.40 6.48 -2.39 -0.02 3.38 16 34 H 0.41 8.08 8.60 -92.71 -0.80 7.28 16 35 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.04 0.77 8.14 -2.38 -0.02 0.75 16 38 H 0.06 0.90 7.75 -2.39 -0.02 0.88 16 39 H 0.40 3.21 9.12 -74.05 -0.68 2.53 16 40 H 0.12 2.75 8.11 -2.39 -0.02 2.73 16 41 H 0.09 2.54 8.05 -2.39 -0.02 2.52 16 42 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 43 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 44 H 0.09 4.11 5.02 -2.38 -0.01 4.10 16 Total: -1.00 -71.62 361.54 1.14 -70.48 By element: Atomic # 1 Polarization: 44.98 SS G_CDS: -0.45 Total: 44.54 kcal Atomic # 6 Polarization: -53.93 SS G_CDS: 3.39 Total: -50.54 kcal Atomic # 7 Polarization: -65.22 SS G_CDS: -1.76 Total: -66.97 kcal Atomic # 8 Polarization: -36.90 SS G_CDS: -2.07 Total: -38.98 kcal Atomic # 14 Polarization: 39.45 SS G_CDS: 2.03 Total: 41.48 kcal Total: -71.62 1.14 -70.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305863506.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.790 kcal (2) G-P(sol) polarization free energy of solvation -71.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds