Wall clock time and date at job start Tue Mar 31 2020 08:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86799 * 119.99752 * 2 1 4 4 H 1.48504 * 109.47073 * 240.00119 * 3 2 1 5 5 H 1.48495 * 109.47246 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47150 * 120.00545 * 3 2 1 7 7 C 1.39925 * 119.99902 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99731 * 175.53918 * 7 2 1 9 9 C 1.41405 * 120.00233 * 355.53670 * 7 2 1 10 10 C 1.40780 * 120.21503 * 214.71790 * 9 7 2 11 11 C 1.37637 * 119.88905 * 180.02562 * 10 9 7 12 12 C 1.38525 * 120.32343 * 359.97438 * 11 10 9 13 13 C 1.39253 * 120.42899 * 359.97438 * 12 11 10 14 14 N 1.39938 * 119.94824 * 180.02562 * 13 12 11 15 15 C 1.34777 * 120.00135 * 35.18154 * 14 13 12 16 16 O 1.21283 * 119.99685 * 355.96301 * 15 14 13 17 17 C 1.50699 * 119.99893 * 175.68688 * 15 14 13 18 18 C 1.53003 * 109.46994 * 179.97438 * 17 15 14 19 19 C 1.53000 * 109.46768 * 179.97438 * 18 17 15 20 20 H 1.09002 * 109.48316 * 304.99956 * 19 18 17 21 21 C 1.53091 * 109.47796 * 184.97547 * 19 18 17 22 22 C 1.53180 * 109.16574 * 182.41863 * 21 19 18 23 23 C 1.53181 * 109.04121 * 56.96367 * 22 21 19 24 24 C 1.53086 * 109.16665 * 303.03043 * 23 22 21 25 25 O 1.42901 * 109.41813 * 57.60644 * 24 23 22 26 26 C 1.38279 * 120.10448 * 0.29148 * 13 12 11 27 27 H 0.96994 * 120.00043 * 359.97438 * 1 2 3 28 28 H 1.08000 * 120.05113 * 359.97438 * 10 9 7 29 29 H 1.08004 * 119.83627 * 179.97438 * 11 10 9 30 30 H 1.08001 * 119.78880 * 180.02562 * 12 11 10 31 31 H 0.96997 * 119.99724 * 215.18285 * 14 13 12 32 32 H 1.08998 * 109.47159 * 299.99901 * 17 15 14 33 33 H 1.08999 * 109.47025 * 60.00087 * 17 15 14 34 34 H 1.08998 * 109.47126 * 299.99969 * 18 17 15 35 35 H 1.08999 * 109.47124 * 60.00196 * 18 17 15 36 36 H 1.09002 * 109.52721 * 302.31594 * 21 19 18 37 37 H 1.09001 * 109.51941 * 62.50310 * 21 19 18 38 38 H 1.08992 * 109.53384 * 297.10327 * 22 21 19 39 39 H 1.08997 * 109.61847 * 176.87770 * 22 21 19 40 40 H 1.08998 * 109.51935 * 183.11740 * 23 22 21 41 41 H 1.09007 * 109.57121 * 62.96867 * 23 22 21 42 42 H 1.09001 * 109.47905 * 297.62195 * 24 23 22 43 43 H 1.08998 * 109.48455 * 177.59594 * 24 23 22 44 44 H 1.07996 * 120.16435 * 179.73558 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.0960 1.6965 -1.2125 5 1 1.2773 2.7464 -0.0006 6 1 3.0961 1.6964 1.2124 7 6 2.0079 -1.2118 -0.0005 8 1 3.0855 -1.2131 -0.0733 9 6 1.3041 -2.4346 0.0942 10 6 1.8629 -3.5213 0.7933 11 6 1.1723 -4.7086 0.8809 12 6 -0.0712 -4.8400 0.2847 13 6 -0.6369 -3.7735 -0.4092 14 7 -1.8939 -3.9171 -1.0072 15 6 -2.8394 -4.6734 -0.4151 16 8 -2.5781 -5.2882 0.5972 17 6 -4.2230 -4.7501 -1.0074 18 6 -5.0949 -5.6688 -0.1491 19 6 -6.4998 -5.7462 -0.7501 20 1 -6.9046 -4.7400 -0.8590 21 6 -7.4060 -6.5639 0.1739 22 6 -8.7934 -6.6879 -0.4634 23 6 -8.6515 -7.3232 -1.8500 24 6 -7.6972 -6.4761 -2.6957 25 8 -6.4359 -6.3755 -2.0316 26 6 0.0439 -2.5743 -0.5129 27 1 -0.4850 0.8400 0.0004 28 1 2.8323 -3.4237 1.2594 29 1 1.6019 -5.5419 1.4171 30 1 -0.6058 -5.7755 0.3592 31 1 -2.0847 -3.4724 -1.8478 32 1 -4.6623 -3.7530 -1.0347 33 1 -4.1630 -5.1487 -2.0201 34 1 -4.6554 -6.6659 -0.1222 35 1 -5.1549 -5.2707 0.8638 36 1 -6.9804 -7.5574 0.3158 37 1 -7.4913 -6.0622 1.1378 38 1 -9.2400 -5.6984 -0.5597 39 1 -9.4286 -7.3154 0.1619 40 1 -9.6276 -7.3646 -2.3333 41 1 -8.2516 -8.3323 -1.7501 42 1 -8.1179 -5.4795 -2.8300 43 1 -7.5591 -6.9465 -3.6692 44 1 -0.3921 -1.7479 -1.0545 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313513994.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:44:33 Heat of formation + Delta-G solvation = -86.503324 kcal Electronic energy + Delta-G solvation = -23928.562116 eV Core-core repulsion = 20423.428949 eV Total energy + Delta-G solvation = -3505.133167 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.89271 -39.33710 -37.18779 -34.29537 -33.93061 -33.77942 -33.17142 -30.41982 -29.44053 -28.32458 -25.82773 -25.16667 -24.10608 -22.13035 -21.15091 -20.63966 -20.45886 -19.43930 -17.36318 -16.90627 -16.68091 -16.04948 -15.56700 -15.14111 -14.93569 -14.77222 -14.71770 -14.49509 -13.90482 -13.62755 -13.31932 -12.93797 -12.79900 -12.71029 -12.29700 -12.16355 -11.95323 -11.72441 -11.41100 -11.34229 -11.13475 -11.05063 -10.94560 -10.89824 -10.75762 -10.44621 -10.39887 -9.96866 -9.83581 -9.62987 -9.36907 -9.16250 -8.79194 -7.21899 -6.90155 -6.56641 -4.37675 2.65295 2.92858 3.10020 3.12679 3.23685 3.38404 3.58790 3.78002 4.00320 4.48241 4.51993 4.59334 4.68136 4.74585 4.93633 4.97903 5.13141 5.15397 5.30447 5.37076 5.42853 5.49112 5.58375 5.64772 5.67329 5.74903 5.79187 5.83918 5.98051 6.10024 6.27048 6.31016 6.69357 6.73530 6.96301 7.07273 7.10570 7.12893 7.35844 7.66854 7.76980 7.95753 8.10823 8.21750 8.38810 8.63783 8.85002 8.96295 9.00791 10.34078 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.024225 B = 0.002619 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.552446 B =10687.295040 C =11386.462979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.071 3.929 3 Si 0.914 3.086 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.467 4.467 8 H 0.075 0.925 9 C 0.112 3.888 10 C -0.216 4.216 11 C -0.098 4.098 12 C -0.215 4.215 13 C 0.135 3.865 14 N -0.665 5.665 15 C 0.505 3.495 16 O -0.531 6.531 17 C -0.137 4.137 18 C -0.094 4.094 19 C 0.090 3.910 20 H 0.059 0.941 21 C -0.151 4.151 22 C -0.123 4.123 23 C -0.157 4.157 24 C 0.060 3.940 25 O -0.377 6.377 26 C -0.170 4.170 27 H 0.276 0.724 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.107 0.893 31 H 0.401 0.599 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.062 0.938 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.048 0.952 43 H 0.092 0.908 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.903 -7.959 -5.180 19.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.143 4.143 3 Si 0.739 3.261 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.499 4.499 8 H 0.093 0.907 9 C 0.110 3.890 10 C -0.236 4.236 11 C -0.117 4.117 12 C -0.236 4.236 13 C 0.044 3.956 14 N -0.308 5.308 15 C 0.292 3.708 16 O -0.407 6.407 17 C -0.177 4.177 18 C -0.132 4.132 19 C 0.032 3.968 20 H 0.076 0.924 21 C -0.189 4.189 22 C -0.160 4.160 23 C -0.195 4.195 24 C -0.016 4.016 25 O -0.296 6.296 26 C -0.192 4.192 27 H 0.087 0.913 28 H 0.112 0.888 29 H 0.110 0.890 30 H 0.125 0.875 31 H 0.235 0.765 32 H 0.108 0.892 33 H 0.116 0.884 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.067 0.933 43 H 0.110 0.890 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -16.785 -8.292 -4.532 19.262 hybrid contribution -0.121 1.187 -0.200 1.210 sum -16.906 -7.105 -4.732 18.939 Atomic orbital electron populations 1.69740 1.07220 1.28546 1.38933 1.25830 0.94918 1.01002 0.92594 0.86276 0.79782 0.80290 0.79703 1.19131 1.20544 1.19172 1.19427 0.94555 0.90017 1.45863 0.90676 1.17416 0.91458 0.91952 0.88199 1.21177 1.01148 0.95198 1.06029 1.20470 0.94788 0.96695 0.99700 1.20534 0.96932 0.98097 1.07988 1.17736 0.84214 0.94798 0.98891 1.43481 1.12453 1.49713 1.25193 1.20680 0.86479 0.79153 0.84446 1.90676 1.81516 1.43768 1.24758 1.21617 0.92664 1.01871 1.01516 1.21353 0.91890 1.01212 0.98736 1.22190 0.96163 0.95043 0.83368 0.92350 1.22205 0.95480 1.01886 0.99312 1.21589 0.97104 1.01058 0.96279 1.22197 1.00152 1.00567 0.96581 1.22535 0.84640 0.98846 0.95628 1.87967 1.29411 1.80752 1.31455 1.21377 0.98509 0.94084 1.05226 0.91296 0.88803 0.89001 0.87463 0.76524 0.89217 0.88448 0.90261 0.89692 0.90841 0.90694 0.91904 0.91553 0.91126 0.91053 0.93348 0.89011 0.84999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -21.28 10.61 55.55 0.59 -20.70 16 2 C 0.07 1.80 5.42 -17.35 -0.09 1.71 16 3 Si 0.91 19.08 29.56 -169.99 -5.03 14.05 16 4 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 5 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 6 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 7 C -0.47 -12.51 9.04 -37.75 -0.34 -12.85 16 8 H 0.08 1.93 7.85 -52.48 -0.41 1.51 16 9 C 0.11 3.04 5.55 -106.85 -0.59 2.45 16 10 C -0.22 -5.44 9.79 -38.84 -0.38 -5.82 16 11 C -0.10 -2.33 10.01 -39.70 -0.40 -2.73 16 12 C -0.21 -5.22 8.70 -39.10 -0.34 -5.56 16 13 C 0.14 3.23 6.28 -83.76 -0.53 2.70 16 14 N -0.67 -12.79 5.33 -9.91 -0.05 -12.85 16 15 C 0.51 9.23 7.67 -10.99 -0.08 9.14 16 16 O -0.53 -11.65 13.43 5.55 0.07 -11.57 16 17 C -0.14 -1.78 5.60 -27.88 -0.16 -1.93 16 18 C -0.09 -1.16 4.21 -26.73 -0.11 -1.27 16 19 C 0.09 0.92 2.64 -26.68 -0.07 0.85 16 20 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 21 C -0.15 -1.34 5.42 -26.59 -0.14 -1.48 16 22 C -0.12 -0.90 6.03 -26.54 -0.16 -1.06 16 23 C -0.16 -1.12 6.14 -26.59 -0.16 -1.29 16 24 C 0.06 0.49 6.84 37.20 0.25 0.75 16 25 O -0.38 -4.16 9.94 -35.23 -0.35 -4.51 16 26 C -0.17 -4.41 8.58 -38.68 -0.33 -4.74 16 27 H 0.28 6.63 8.30 -40.82 -0.34 6.30 16 28 H 0.09 2.21 8.06 -52.49 -0.42 1.79 16 29 H 0.09 1.93 8.06 -52.48 -0.42 1.51 16 30 H 0.11 2.59 6.23 -52.49 -0.33 2.26 16 31 H 0.40 6.36 8.82 -40.82 -0.36 6.00 16 32 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.10 1.15 7.82 -51.93 -0.41 0.75 16 34 H 0.08 1.09 8.10 -51.93 -0.42 0.67 16 35 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.13 3.47 6.15 -52.49 -0.32 3.14 16 LS Contribution 357.02 15.07 5.38 5.38 Total: -1.00 -30.90 357.02 -9.90 -40.80 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: -6.88 Total: 10.53 kcal Atomic # 6 Polarization: -17.51 SS G_CDS: -3.64 Total: -21.15 kcal Atomic # 7 Polarization: -34.08 SS G_CDS: 0.54 Total: -33.54 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: -0.28 Total: -16.08 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.03 Total: 14.05 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.90 -9.90 -40.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313513994.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.700 kcal (2) G-P(sol) polarization free energy of solvation -30.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds