Wall clock time and date at job start Tue Mar 31 2020 08:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86808 * 119.99758 * 2 1 4 4 H 1.48496 * 109.46954 * 240.00317 * 3 2 1 5 5 H 1.48495 * 109.47145 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46843 * 120.00415 * 3 2 1 7 7 C 1.39931 * 120.00253 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00004 * 193.19608 * 7 2 1 9 9 C 1.41439 * 119.99753 * 13.19282 * 7 2 1 10 10 C 1.40784 * 120.17620 * 210.24361 * 9 7 2 11 11 C 1.37707 * 120.04132 * 180.27650 * 10 9 7 12 12 C 1.38372 * 120.41534 * 0.02562 * 11 10 9 13 13 C 1.39884 * 120.35203 * 0.02562 * 12 11 10 14 14 C 1.47892 * 120.02388 * 180.02562 * 13 12 11 15 15 O 1.21546 * 120.00019 * 156.44454 * 14 13 12 16 16 N 1.34777 * 119.99553 * 336.44663 * 14 13 12 17 17 C 1.46498 * 120.00289 * 12.84149 * 16 14 13 18 18 C 1.53000 * 109.47250 * 72.44338 * 17 16 14 19 19 C 1.52997 * 109.47159 * 180.02562 * 18 17 16 20 20 C 1.53000 * 109.47159 * 179.97438 * 19 18 17 21 21 O 1.42907 * 109.47071 * 180.02562 * 20 19 18 22 22 C 1.46502 * 119.99750 * 192.83568 * 16 14 13 23 23 C 1.53005 * 117.49572 * 15.21585 * 22 16 14 24 24 C 1.52998 * 117.49983 * 306.55542 * 22 16 14 25 25 C 1.39033 * 119.95372 * 359.97438 * 13 12 11 26 26 H 0.97001 * 120.00244 * 359.97438 * 1 2 3 27 27 H 1.08000 * 119.98107 * 0.26202 * 10 9 7 28 28 H 1.08007 * 119.79710 * 180.02562 * 11 10 9 29 29 H 1.07992 * 119.82612 * 180.02562 * 12 11 10 30 30 H 1.09004 * 109.46903 * 192.43873 * 17 16 14 31 31 H 1.08996 * 109.47272 * 312.44184 * 17 16 14 32 32 H 1.08998 * 109.47082 * 299.99925 * 18 17 16 33 33 H 1.08996 * 109.47109 * 59.99746 * 18 17 16 34 34 H 1.08998 * 109.46975 * 299.99884 * 19 18 17 35 35 H 1.08996 * 109.47405 * 59.99820 * 19 18 17 36 36 H 1.09004 * 109.46788 * 299.99499 * 20 19 18 37 37 H 1.08993 * 109.47320 * 60.00113 * 20 19 18 38 38 H 0.96700 * 113.99535 * 180.02562 * 21 20 19 39 39 H 1.08997 * 115.55215 * 160.87808 * 22 16 14 40 40 H 1.08998 * 117.50154 * 359.97438 * 23 22 16 41 41 H 1.08998 * 117.49652 * 145.02269 * 23 22 16 42 42 H 1.08997 * 117.50142 * 214.97542 * 24 22 16 43 43 H 1.09001 * 117.50261 * 359.97256 * 24 22 16 44 44 H 1.07992 * 120.20278 * 180.02562 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0959 1.6965 -1.2125 5 1 1.2772 2.7465 0.0006 6 1 3.0961 1.6964 1.2125 7 6 2.0080 -1.2118 -0.0005 8 1 3.0666 -1.2242 0.2130 9 6 1.3288 -2.4204 -0.2806 10 6 1.7663 -3.6280 0.2957 11 6 1.1065 -4.8040 0.0166 12 6 0.0120 -4.8093 -0.8300 13 6 -0.4365 -3.6193 -1.4128 14 6 -1.6074 -3.6332 -2.3162 15 8 -2.2588 -2.6206 -2.4824 16 7 -1.9521 -4.7688 -2.9550 17 6 -1.3575 -6.0455 -2.5519 18 6 -1.9442 -6.4794 -1.2072 19 6 -1.3227 -7.8125 -0.7859 20 6 -1.9090 -8.2461 0.5592 21 8 -1.3280 -9.4909 0.9530 22 6 -2.9216 -4.7263 -4.0526 23 6 -3.2374 -3.3597 -4.6637 24 6 -4.2710 -4.0597 -3.7778 25 6 0.2185 -2.4234 -1.1414 26 1 -0.4850 0.8400 0.0004 27 1 2.6202 -3.6322 0.9570 28 1 1.4453 -5.7282 0.4613 29 1 -0.4987 -5.7369 -1.0420 30 1 -1.5768 -6.8023 -3.3051 31 1 -0.2779 -5.9296 -2.4569 32 1 -1.7250 -5.7226 -0.4540 33 1 -3.0238 -6.5953 -1.3022 34 1 -1.5415 -8.5695 -1.5390 35 1 -0.2432 -7.6961 -0.6907 36 1 -1.6897 -7.4889 1.3121 37 1 -2.9885 -8.3624 0.4645 38 1 -1.6544 -9.8271 1.7988 39 1 -2.9123 -5.5868 -4.7216 40 1 -2.7241 -2.4921 -4.2490 41 1 -3.4363 -3.3212 -5.7347 42 1 -5.1494 -4.4813 -4.2664 43 1 -4.4377 -3.6530 -2.7803 44 1 -0.1246 -1.5024 -1.5888 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338248770.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:38:03 Heat of formation + Delta-G solvation = 13.834305 kcal Electronic energy + Delta-G solvation = -25253.827371 eV Core-core repulsion = 21753.045170 eV Total energy + Delta-G solvation = -3500.782201 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.36177 -37.75247 -37.19541 -36.12816 -35.48533 -33.45191 -32.50547 -29.93381 -29.43127 -27.88244 -25.34999 -23.79069 -22.99577 -22.10440 -21.39611 -21.09193 -20.80597 -18.70752 -17.42284 -17.30334 -16.73972 -16.35040 -15.39963 -15.22856 -14.90067 -14.65748 -14.32201 -14.11133 -13.60578 -13.32525 -12.98562 -12.81453 -12.55860 -12.39136 -12.28224 -11.92948 -11.71173 -11.61896 -11.20373 -11.17946 -11.10697 -10.95045 -10.77672 -10.71716 -10.39752 -10.19128 -10.10224 -10.02739 -9.89298 -9.33232 -9.17336 -8.79119 -8.01786 -7.58406 -7.40530 -6.72753 -4.39748 2.21548 2.82577 3.09084 3.10852 3.15999 3.26267 3.66626 3.95148 4.07941 4.24533 4.64172 4.83754 4.98613 4.99455 5.09015 5.17409 5.26020 5.30923 5.41836 5.53087 5.56669 5.61500 5.74253 5.80577 5.84257 5.94069 5.97746 6.12978 6.18505 6.30240 6.40251 6.47912 6.63554 6.70642 7.01771 7.04108 7.09835 7.23444 7.40908 7.50898 7.66289 7.77973 7.87457 8.01445 8.19648 8.52195 8.83356 8.84579 8.89196 10.23128 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.012252 B = 0.004939 C = 0.003708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.853715 B = 5668.350026 C = 7549.649373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.073 3.927 3 Si 0.910 3.090 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.468 4.468 8 H 0.079 0.921 9 C 0.101 3.899 10 C -0.205 4.205 11 C -0.104 4.104 12 C -0.277 4.277 13 C -0.129 4.129 14 C 0.566 3.434 15 O -0.532 6.532 16 N -0.592 5.592 17 C 0.106 3.894 18 C -0.164 4.164 19 C -0.117 4.117 20 C 0.075 3.925 21 O -0.577 6.577 22 C 0.074 3.926 23 C -0.192 4.192 24 C -0.189 4.189 25 C -0.089 4.089 26 H 0.283 0.717 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.163 0.837 30 H 0.073 0.927 31 H 0.104 0.896 32 H 0.106 0.894 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.050 0.950 37 H 0.043 0.957 38 H 0.377 0.623 39 H 0.122 0.878 40 H 0.132 0.868 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.098 0.902 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.207 -12.388 -3.440 13.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.145 4.145 3 Si 0.734 3.266 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.191 1.191 7 C -0.498 4.498 8 H 0.097 0.903 9 C 0.099 3.901 10 C -0.225 4.225 11 C -0.122 4.122 12 C -0.295 4.295 13 C -0.132 4.132 14 C 0.359 3.641 15 O -0.410 6.410 16 N -0.324 5.324 17 C -0.017 4.017 18 C -0.202 4.202 19 C -0.155 4.155 20 C -0.003 4.003 21 O -0.382 6.382 22 C -0.030 4.030 23 C -0.229 4.229 24 C -0.228 4.228 25 C -0.109 4.109 26 H 0.094 0.906 27 H 0.112 0.888 28 H 0.110 0.890 29 H 0.180 0.820 30 H 0.092 0.908 31 H 0.121 0.879 32 H 0.124 0.876 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.069 0.931 37 H 0.061 0.939 38 H 0.224 0.776 39 H 0.140 0.860 40 H 0.150 0.850 41 H 0.104 0.896 42 H 0.107 0.893 43 H 0.116 0.884 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -5.433 -11.584 -4.092 13.433 hybrid contribution -0.055 0.723 0.679 0.993 sum -5.488 -10.861 -3.413 12.639 Atomic orbital electron populations 1.69770 1.07356 1.29612 1.34959 1.25903 0.94809 1.01250 0.92496 0.86343 0.80025 0.80344 0.79863 1.18856 1.20303 1.19057 1.19500 0.96553 0.90573 1.43151 0.90321 1.17563 0.91235 0.92458 0.88840 1.21222 1.03320 0.93546 1.04414 1.20534 0.96440 0.96512 0.98730 1.22794 1.01986 0.98982 1.05721 1.19459 0.96762 0.95696 1.01298 1.18976 0.84123 0.81642 0.79340 1.90587 1.53318 1.33879 1.63191 1.47233 1.43429 1.07546 1.34174 1.22102 0.99935 0.84527 0.95157 1.22484 1.00570 0.97925 0.99247 1.21450 1.01735 0.96402 0.95942 1.22201 0.96014 0.85296 0.96758 1.86461 1.69644 1.39025 1.43069 1.21612 0.91508 0.97710 0.92204 1.23686 1.03100 0.98209 0.97909 1.23251 0.92526 1.04839 1.02189 1.21504 0.96757 0.95357 0.97280 0.90570 0.88798 0.89013 0.82040 0.90814 0.87868 0.87616 0.91549 0.91262 0.90367 0.93119 0.93869 0.77605 0.85990 0.85020 0.89579 0.89323 0.88377 0.85641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.29 11.10 55.55 0.62 -20.67 16 2 C 0.07 1.88 5.19 -17.35 -0.09 1.79 16 3 Si 0.91 19.04 29.58 -169.99 -5.03 14.01 16 4 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 5 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 6 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 7 C -0.47 -12.39 9.04 -37.73 -0.34 -12.73 16 8 H 0.08 1.98 7.88 -52.48 -0.41 1.57 16 9 C 0.10 2.67 5.51 -106.87 -0.59 2.09 16 10 C -0.21 -4.85 9.78 -38.81 -0.38 -5.23 16 11 C -0.10 -2.16 10.01 -39.73 -0.40 -2.56 16 12 C -0.28 -5.55 6.19 -38.92 -0.24 -5.79 16 13 C -0.13 -2.98 5.74 -105.03 -0.60 -3.58 16 14 C 0.57 12.15 7.02 -12.31 -0.09 12.06 16 15 O -0.53 -12.79 12.37 5.32 0.07 -12.72 16 16 N -0.59 -9.90 2.92 -170.96 -0.50 -10.40 16 17 C 0.11 1.43 5.07 -4.04 -0.02 1.41 16 18 C -0.16 -2.11 4.31 -26.73 -0.12 -2.23 16 19 C -0.12 -1.32 5.39 -26.73 -0.14 -1.47 16 20 C 0.07 0.80 7.05 37.16 0.26 1.06 16 21 O -0.58 -6.24 13.66 -35.23 -0.48 -6.72 16 22 C 0.07 1.07 6.59 -67.93 -0.45 0.63 16 23 C -0.19 -2.98 9.62 -26.69 -0.26 -3.23 16 24 C -0.19 -2.76 9.88 -26.69 -0.26 -3.02 16 25 C -0.09 -2.35 8.19 -38.44 -0.31 -2.66 16 26 H 0.28 7.06 8.30 -40.82 -0.34 6.72 16 27 H 0.09 2.08 8.06 -52.49 -0.42 1.66 16 28 H 0.09 1.63 8.06 -52.48 -0.42 1.21 16 29 H 0.16 2.63 0.78 -97.63 -0.08 2.56 16 30 H 0.07 0.78 7.85 -51.93 -0.41 0.38 16 31 H 0.10 1.53 5.43 -51.93 -0.28 1.24 16 32 H 0.11 1.67 5.29 -51.93 -0.27 1.39 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.08 0.95 7.62 -51.93 -0.40 0.55 16 36 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.38 2.34 9.12 45.56 0.42 2.75 16 39 H 0.12 1.37 7.99 -51.93 -0.42 0.95 16 40 H 0.13 2.56 5.39 -51.93 -0.28 2.28 16 41 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.10 1.70 7.48 -51.93 -0.39 1.31 16 44 H 0.13 3.60 6.20 -52.49 -0.33 3.27 16 LS Contribution 349.82 15.07 5.27 5.27 Total: -1.00 -30.71 349.82 -9.44 -40.15 By element: Atomic # 1 Polarization: 19.89 SS G_CDS: -5.36 Total: 14.53 kcal Atomic # 6 Polarization: -19.43 SS G_CDS: -4.03 Total: -23.46 kcal Atomic # 7 Polarization: -31.19 SS G_CDS: 0.12 Total: -31.07 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: -0.42 Total: -19.44 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.03 Total: 14.01 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.71 -9.44 -40.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338248770.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.987 kcal (2) G-P(sol) polarization free energy of solvation -30.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds