Wall clock time and date at job start Tue Mar 31 2020 08:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.46786 * 126.90344 * 2 1 4 4 C 1.39403 * 134.37849 * 0.03870 * 3 2 1 5 5 C 1.36735 * 119.71760 * 179.97438 * 4 3 2 6 6 C 1.38743 * 120.42001 * 0.02799 * 5 4 3 7 7 C 1.37840 * 120.68253 * 359.97390 * 6 5 4 8 8 C 1.38941 * 119.82066 * 0.02562 * 7 6 5 9 9 O 1.34811 * 133.49328 * 180.33771 * 8 7 6 10 10 C 1.33998 * 126.90747 * 180.02562 * 2 1 3 11 11 C 1.50699 * 124.92326 * 359.95887 * 10 2 1 12 12 H 1.09000 * 109.47247 * 14.99844 * 11 10 2 13 13 C 1.53006 * 109.46866 * 255.00013 * 11 10 2 14 14 N 1.46899 * 109.47244 * 135.00045 * 11 10 2 15 15 C 1.46898 * 110.99771 * 204.99835 * 14 11 10 16 16 C 1.52997 * 109.46667 * 179.97438 * 15 14 11 17 17 O 1.42900 * 109.47179 * 65.00189 * 16 15 14 18 18 C 1.42910 * 113.99736 * 179.97438 * 17 16 15 19 19 C 1.50705 * 109.46773 * 179.97438 * 18 17 16 20 20 H 1.08003 * 120.00001 * 0.02562 * 19 18 17 21 21 C 1.37874 * 120.00040 * 179.97438 * 19 18 17 22 22 N 1.31521 * 119.99891 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00034 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47388 * 60.00152 * 23 21 19 25 25 H 1.48504 * 109.46921 * 180.02562 * 23 21 19 26 26 H 1.48493 * 109.46858 * 299.99723 * 23 21 19 27 27 H 1.08997 * 109.47118 * 269.97455 * 1 2 3 28 28 H 1.08998 * 109.47110 * 29.97919 * 1 2 3 29 29 H 1.09002 * 109.46890 * 149.97977 * 1 2 3 30 30 H 1.08001 * 120.13955 * 0.02562 * 4 3 2 31 31 H 1.08004 * 119.79029 * 179.97438 * 5 4 3 32 32 H 1.07997 * 119.65485 * 179.97438 * 6 5 4 33 33 H 1.08003 * 120.09024 * 179.97438 * 7 6 5 34 34 H 1.09001 * 109.46998 * 179.97438 * 13 11 10 35 35 H 1.09000 * 109.47050 * 299.99952 * 13 11 10 36 36 H 1.09001 * 109.46801 * 60.00064 * 13 11 10 37 37 H 1.00900 * 111.00095 * 81.04177 * 14 11 10 38 38 H 1.08993 * 109.47394 * 299.99882 * 15 14 11 39 39 H 1.09003 * 109.47121 * 60.00162 * 15 14 11 40 40 H 1.09004 * 109.47146 * 185.00242 * 16 15 14 41 41 H 1.08999 * 109.47561 * 304.99895 * 16 15 14 42 42 H 1.08998 * 109.47058 * 299.99487 * 18 17 16 43 43 H 1.08999 * 109.47306 * 60.00022 * 18 17 16 44 44 H 0.96999 * 119.99969 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3884 1.1738 0.0000 4 6 2.1771 2.5517 0.0007 5 6 3.2482 3.4017 0.0010 6 6 4.5422 2.9012 0.0000 7 6 4.7706 1.5419 -0.0007 8 6 3.6963 0.6607 -0.0010 9 8 3.5991 -0.6838 0.0041 10 6 2.3117 -1.0715 -0.0005 11 6 1.8418 -2.5033 -0.0002 12 1 0.7852 -2.5390 -0.2656 13 6 2.0383 -3.1043 1.3931 14 7 2.6190 -3.2739 -0.9800 15 6 1.8643 -4.4444 -1.4473 16 6 2.7040 -5.2197 -2.4644 17 8 3.8634 -5.7504 -1.8192 18 6 4.7202 -6.4971 -2.6856 19 6 5.9042 -7.0061 -1.9045 20 1 5.9933 -6.7822 -0.8517 21 6 6.8732 -7.7585 -2.5337 22 7 6.7645 -8.0316 -3.8156 23 14 8.3405 -8.3901 -1.5653 24 1 7.8666 -9.2649 -0.4629 25 1 9.2309 -9.1659 -2.4657 26 1 9.0907 -7.2411 -0.9979 27 1 -0.3633 -0.0005 1.0276 28 1 -0.3633 0.8902 -0.5135 29 1 -0.3633 -0.8898 -0.5142 30 1 1.1717 2.9461 0.0018 31 1 3.0858 4.4695 0.0011 32 1 5.3791 3.5838 -0.0001 33 1 5.7819 1.1627 -0.0018 34 1 1.6980 -4.1398 1.3934 35 1 3.0949 -3.0686 1.6584 36 1 1.4616 -2.5324 2.1200 37 1 3.5118 -3.5482 -0.5982 38 1 1.6326 -5.0894 -0.5999 39 1 0.9376 -4.1151 -1.9174 40 1 2.1119 -6.0366 -2.8772 41 1 3.0101 -4.5505 -3.2685 42 1 4.1697 -7.3405 -3.1025 43 1 5.0680 -5.8547 -3.4946 44 1 7.4464 -8.5606 -4.2583 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339086789.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:55:59 Heat of formation + Delta-G solvation = -30.622322 kcal Electronic energy + Delta-G solvation = -23933.919116 eV Core-core repulsion = 20431.209132 eV Total energy + Delta-G solvation = -3502.709985 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.52381 -38.19621 -37.46093 -36.14935 -34.07398 -32.76343 -31.38439 -30.66625 -29.45714 -27.81428 -27.18046 -26.44570 -23.88888 -22.88622 -22.36972 -21.53580 -20.97270 -20.04619 -17.09525 -16.95906 -16.48493 -16.24886 -15.91880 -15.69437 -15.48273 -14.67189 -14.50175 -14.25744 -14.04822 -13.90790 -13.65776 -13.36429 -13.17599 -12.92198 -12.72063 -12.49501 -12.33350 -12.11898 -12.09932 -11.83044 -11.57631 -11.42297 -11.20716 -10.95580 -10.82874 -10.74570 -10.57589 -10.03624 -9.90480 -9.12219 -8.82879 -8.69714 -8.37758 -8.17548 -8.07326 -6.10523 -4.12449 0.82105 1.26776 2.24428 2.70082 3.32274 3.35008 3.38732 3.60689 4.03377 4.34765 4.41589 4.52060 4.73733 4.81722 4.84981 4.87005 4.98123 5.03820 5.17833 5.25860 5.28454 5.39593 5.41645 5.45385 5.46886 5.55588 5.59108 5.67852 5.74675 5.86241 5.99854 6.04567 6.14075 6.16671 6.17512 6.30380 6.31599 6.39023 6.57498 7.02609 7.11210 7.22705 7.43726 7.52331 7.78688 8.15216 8.56853 8.99994 9.52286 11.00963 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.016462 B = 0.002884 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.433615 B = 9705.471154 C =10753.128584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.191 4.191 3 C -0.121 4.121 4 C -0.075 4.075 5 C -0.139 4.139 6 C -0.101 4.101 7 C -0.104 4.104 8 C 0.053 3.947 9 O -0.177 6.177 10 C 0.070 3.930 11 C 0.156 3.844 12 H 0.107 0.893 13 C -0.183 4.183 14 N -0.680 5.680 15 C 0.066 3.934 16 C 0.062 3.938 17 O -0.399 6.399 18 C 0.198 3.802 19 C -0.515 4.515 20 H 0.065 0.935 21 C 0.056 3.944 22 N -0.899 5.899 23 Si 0.908 3.092 24 H -0.275 1.275 25 H -0.286 1.286 26 H -0.274 1.274 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.123 0.877 31 H 0.126 0.874 32 H 0.132 0.868 33 H 0.132 0.868 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.364 0.636 38 H 0.039 0.961 39 H 0.077 0.923 40 H 0.042 0.958 41 H 0.047 0.953 42 H 0.004 0.996 43 H 0.006 0.994 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.023 20.296 8.813 25.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.193 4.193 3 C -0.122 4.122 4 C -0.093 4.093 5 C -0.158 4.158 6 C -0.119 4.119 7 C -0.122 4.122 8 C 0.005 3.995 9 O -0.077 6.077 10 C 0.021 3.979 11 C 0.046 3.954 12 H 0.125 0.875 13 C -0.241 4.241 14 N -0.313 5.313 15 C -0.063 4.063 16 C -0.016 4.016 17 O -0.319 6.319 18 C 0.124 3.876 19 C -0.554 4.554 20 H 0.083 0.917 21 C -0.145 4.145 22 N -0.538 5.538 23 Si 0.735 3.265 24 H -0.201 1.201 25 H -0.211 1.211 26 H -0.200 1.200 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.141 0.859 31 H 0.144 0.856 32 H 0.150 0.850 33 H 0.150 0.850 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.185 0.815 38 H 0.057 0.943 39 H 0.095 0.905 40 H 0.061 0.939 41 H 0.065 0.935 42 H 0.022 0.978 43 H 0.024 0.976 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.830 20.407 8.310 25.497 hybrid contribution 0.813 -0.897 0.744 1.421 sum -12.017 19.510 9.054 24.638 Atomic orbital electron populations 1.20122 0.88717 1.02625 1.01878 1.20721 0.96379 0.90279 1.11934 1.19794 0.92553 0.94158 1.05718 1.20215 0.99327 0.90623 0.99161 1.20727 0.92366 0.99723 1.02935 1.20885 0.97380 0.93690 0.99919 1.19997 0.96889 0.91289 1.04056 1.19650 0.95485 0.81593 1.02761 1.84030 1.27747 1.20495 1.75473 1.22149 0.80280 0.95781 0.99667 1.20205 0.98016 0.85133 0.92064 0.87476 1.22526 1.03416 1.01621 0.96580 1.60531 1.07254 1.24122 1.39397 1.22022 0.96149 0.90198 0.97952 1.22284 0.88855 0.95677 0.94822 1.87786 1.34029 1.71611 1.38500 1.20170 0.88134 0.89463 0.89856 1.21010 1.05121 1.32523 0.96710 0.91682 1.24948 0.98455 0.96017 0.95073 1.69955 1.35310 1.39086 1.09405 0.86397 0.81651 0.78919 0.79518 1.20057 1.21146 1.19986 0.91548 0.91575 0.91400 0.85902 0.85626 0.84980 0.84990 0.91078 0.91448 0.91767 0.81529 0.94258 0.90472 0.93941 0.93486 0.97803 0.97616 0.92590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.67 10.13 36.01 0.36 -0.31 16 2 C -0.19 -2.35 6.35 -102.66 -0.65 -3.01 16 3 C -0.12 -1.57 6.38 -105.16 -0.67 -2.24 16 4 C -0.08 -0.78 10.05 -39.69 -0.40 -1.18 16 5 C -0.14 -1.27 9.98 -39.94 -0.40 -1.67 16 6 C -0.10 -0.96 10.01 -39.54 -0.40 -1.35 16 7 C -0.10 -1.22 10.07 -39.47 -0.40 -1.62 16 8 C 0.05 0.75 7.42 -38.47 -0.29 0.46 16 9 O -0.18 -2.77 10.58 3.90 0.04 -2.73 16 10 C 0.07 0.96 6.07 -35.80 -0.22 0.74 16 11 C 0.16 1.90 2.95 -68.86 -0.20 1.70 16 12 H 0.11 1.08 6.37 -51.93 -0.33 0.75 16 13 C -0.18 -2.02 9.14 37.16 0.34 -1.68 16 14 N -0.68 -10.26 6.23 -107.95 -0.67 -10.93 16 15 C 0.07 0.95 5.90 -3.83 -0.02 0.92 16 16 C 0.06 1.14 6.28 37.16 0.23 1.37 16 17 O -0.40 -9.48 9.85 -35.23 -0.35 -9.83 16 18 C 0.20 5.46 5.69 36.01 0.20 5.67 16 19 C -0.52 -15.25 9.43 -34.44 -0.32 -15.57 16 20 H 0.06 1.90 7.81 -52.48 -0.41 1.49 16 21 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 22 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 23 Si 0.91 21.99 29.54 -169.99 -5.02 16.97 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.53 6.95 -51.93 -0.36 0.17 16 30 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 31 H 0.13 0.80 8.06 -52.48 -0.42 0.37 16 32 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 33 H 0.13 1.37 8.06 -52.48 -0.42 0.94 16 34 H 0.07 0.76 7.45 -51.93 -0.39 0.37 16 35 H 0.07 0.83 8.13 -51.93 -0.42 0.41 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.36 6.24 8.03 -39.29 -0.32 5.93 16 38 H 0.04 0.55 7.44 -51.93 -0.39 0.16 16 39 H 0.08 0.92 8.06 -51.93 -0.42 0.50 16 40 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.00 0.12 8.14 -51.93 -0.42 -0.30 16 43 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 44 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 369.91 15.07 5.57 5.57 Total: -1.00 -32.89 369.91 -9.43 -42.32 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -6.82 Total: 1.23 kcal Atomic # 6 Polarization: -13.30 SS G_CDS: -2.92 Total: -16.23 kcal Atomic # 7 Polarization: -37.37 SS G_CDS: 0.06 Total: -37.31 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: -0.31 Total: -12.56 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.89 -9.43 -42.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339086789.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.696 kcal (2) G-P(sol) polarization free energy of solvation -32.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds