Wall clock time and date at job start Tue Mar 31 2020 08:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30635 * 1 3 3 Si 1.86800 * 120.00219 * 2 1 4 4 H 1.48500 * 109.47431 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46981 * 300.00191 * 3 2 1 6 6 H 1.48498 * 109.46967 * 60.00043 * 3 2 1 7 7 C 1.40230 * 120.00053 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00268 * 197.87028 * 7 2 1 9 9 C 1.41109 * 119.99690 * 17.88009 * 7 2 1 10 10 C 1.40894 * 120.09797 * 204.62400 * 9 7 2 11 11 C 1.36321 * 119.88775 * 180.02562 * 10 9 7 12 12 C 1.40014 * 120.10886 * 359.97438 * 11 10 9 13 13 C 1.47634 * 119.89807 * 179.97438 * 12 11 10 14 14 O 1.21593 * 120.00127 * 0.02562 * 13 12 11 15 15 N 1.34775 * 120.00358 * 180.02562 * 13 12 11 16 16 C 1.46499 * 120.00245 * 180.02562 * 15 13 12 17 17 C 1.52999 * 109.47087 * 179.97438 * 16 15 13 18 18 O 1.42894 * 109.47146 * 65.00431 * 17 16 15 19 19 C 1.42904 * 114.00074 * 179.97438 * 18 17 16 20 20 C 1.54888 * 110.48619 * 93.23901 * 19 18 17 21 21 C 1.55235 * 102.58971 * 156.67607 * 20 19 18 22 22 C 1.54261 * 104.22848 * 322.08539 * 21 20 19 23 23 C 1.53870 * 106.60383 * 23.60979 * 22 21 20 24 24 C 1.40020 * 120.20673 * 0.25819 * 12 11 10 25 25 C 1.36315 * 120.10410 * 359.48055 * 24 12 11 26 26 H 0.97006 * 120.00472 * 359.97438 * 1 2 3 27 27 H 1.07996 * 120.05876 * 359.97438 * 10 9 7 28 28 H 1.07997 * 119.94577 * 179.97438 * 11 10 9 29 29 H 0.96998 * 120.00191 * 0.02562 * 15 13 12 30 30 H 1.09005 * 109.47116 * 59.99421 * 16 15 13 31 31 H 1.09001 * 109.46926 * 300.00224 * 16 15 13 32 32 H 1.08993 * 109.47182 * 304.99745 * 17 16 15 33 33 H 1.09003 * 109.46723 * 184.99859 * 17 16 15 34 34 H 1.08995 * 110.43166 * 330.69677 * 19 18 17 35 35 H 1.09005 * 110.75787 * 275.07018 * 20 19 18 36 36 H 1.08998 * 110.75791 * 38.43334 * 20 19 18 37 37 H 1.08995 * 110.46742 * 203.38935 * 21 20 19 38 38 H 1.09005 * 110.57951 * 80.82562 * 21 20 19 39 39 H 1.09001 * 110.02958 * 264.32291 * 22 21 20 40 40 H 1.09008 * 110.07454 * 142.91949 * 22 21 20 41 41 H 1.09003 * 110.03146 * 240.71823 * 23 22 21 42 42 H 1.08997 * 110.07506 * 119.30669 * 23 22 21 43 43 H 1.07993 * 119.94214 * 179.74551 * 24 12 11 44 44 H 1.08001 * 120.05039 * 180.23656 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 3.7004 1.3464 -0.0006 5 1 1.8816 2.3964 -1.2125 6 1 1.8817 2.3964 1.2125 7 6 2.0075 -1.2144 0.0005 8 1 3.0485 -1.2369 0.2876 9 6 1.3530 -2.4071 -0.3741 10 6 1.8267 -3.6494 0.0920 11 6 1.1915 -4.7990 -0.2731 12 6 0.0698 -4.7465 -1.1093 13 6 -0.6143 -5.9944 -1.5023 14 8 -0.2037 -7.0656 -1.0993 15 7 -1.6939 -5.9463 -2.3076 16 6 -2.3730 -7.1846 -2.6970 17 6 -3.5580 -6.8522 -3.6059 18 8 -3.0778 -6.2847 -4.8263 19 6 -4.1100 -5.9369 -5.7513 20 6 -4.5231 -4.4551 -5.5706 21 6 -5.1327 -4.1027 -6.9541 22 6 -4.2350 -4.8463 -7.9645 23 6 -3.5847 -6.0125 -7.1999 24 6 -0.4017 -3.5145 -1.5790 25 6 0.2237 -2.3593 -1.2150 26 1 -0.4851 0.8401 0.0004 27 1 2.6921 -3.6910 0.7368 28 1 1.5540 -5.7518 0.0834 29 1 -2.0213 -5.0919 -2.6294 30 1 -2.7324 -7.6979 -1.8050 31 1 -1.6749 -7.8295 -3.2307 32 1 -4.2109 -6.1376 -3.1050 33 1 -4.1156 -7.7632 -3.8236 34 1 -4.9720 -6.5916 -5.6235 35 1 -5.2676 -4.3552 -4.7808 36 1 -3.6520 -3.8338 -5.3625 37 1 -5.0911 -3.0272 -7.1261 38 1 -6.1604 -4.4596 -7.0221 39 1 -3.4657 -4.1745 -8.3455 40 1 -4.8370 -5.2295 -8.7885 41 1 -2.4999 -5.9066 -7.2096 42 1 -3.8711 -6.9621 -7.6518 43 1 -1.2648 -3.4793 -2.2272 44 1 -0.1430 -1.4093 -1.5747 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340097797.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:18:57 Heat of formation + Delta-G solvation = -88.877083 kcal Electronic energy + Delta-G solvation = -23887.770516 eV Core-core repulsion = 20382.534416 eV Total energy + Delta-G solvation = -3505.236101 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.34323 -38.80634 -37.13416 -36.32476 -34.00075 -33.83873 -30.60280 -29.43380 -29.16490 -28.89047 -27.42331 -25.76365 -22.86988 -21.60404 -20.95463 -20.83184 -20.48399 -19.57482 -17.50546 -17.33803 -16.81206 -15.93945 -15.87616 -15.38992 -15.15070 -14.38166 -14.28282 -13.99508 -13.65651 -13.58590 -13.26927 -13.09614 -12.90342 -12.66676 -12.08670 -12.02841 -11.87827 -11.62529 -11.48199 -11.39787 -11.31913 -11.28742 -11.23004 -10.92207 -10.79850 -10.66460 -10.61637 -10.01278 -9.63034 -9.53548 -9.32329 -8.91932 -8.52749 -7.68354 -7.50700 -7.01205 -4.57380 2.27052 2.92170 2.96515 3.02191 3.07132 3.47292 3.75915 3.88356 3.91962 4.34375 4.39694 4.60416 4.66649 4.89595 5.03079 5.10269 5.23967 5.24646 5.26973 5.36808 5.42389 5.59462 5.62723 5.67570 5.76934 5.82011 5.86440 5.98110 5.99413 6.09317 6.10306 6.19684 6.35601 6.79941 6.85430 6.97985 7.08671 7.15803 7.17200 7.47058 7.69300 7.83244 7.89431 8.10206 8.31137 8.43136 8.66150 8.78630 9.13677 9.90830 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.013001 B = 0.003279 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.148097 B = 8537.694778 C =10290.953625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.075 3.925 3 Si 0.912 3.088 4 H -0.257 1.257 5 H -0.269 1.269 6 H -0.272 1.272 7 C -0.443 4.443 8 H 0.085 0.915 9 C 0.128 3.872 10 C -0.239 4.239 11 C -0.022 4.022 12 C -0.283 4.283 13 C 0.571 3.429 14 O -0.579 6.579 15 N -0.736 5.736 16 C 0.127 3.873 17 C 0.051 3.949 18 O -0.373 6.373 19 C 0.083 3.917 20 C -0.149 4.149 21 C -0.123 4.123 22 C -0.123 4.123 23 C -0.123 4.123 24 C -0.061 4.061 25 C -0.178 4.178 26 H 0.285 0.715 27 H 0.098 0.902 28 H 0.101 0.899 29 H 0.400 0.600 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.078 0.922 42 H 0.066 0.934 43 H 0.089 0.911 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.218 -4.605 -11.730 16.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.147 4.147 3 Si 0.736 3.264 4 H -0.181 1.181 5 H -0.194 1.194 6 H -0.197 1.197 7 C -0.471 4.471 8 H 0.103 0.897 9 C 0.125 3.875 10 C -0.259 4.259 11 C -0.042 4.042 12 C -0.287 4.287 13 C 0.366 3.634 14 O -0.461 6.461 15 N -0.390 5.390 16 C 0.002 3.998 17 C -0.026 4.026 18 O -0.292 6.292 19 C 0.025 3.975 20 C -0.187 4.187 21 C -0.161 4.161 22 C -0.160 4.160 23 C -0.161 4.161 24 C -0.081 4.081 25 C -0.198 4.198 26 H 0.097 0.903 27 H 0.116 0.884 28 H 0.119 0.881 29 H 0.235 0.765 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.100 0.900 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.097 0.903 42 H 0.085 0.915 43 H 0.107 0.893 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -10.958 -5.195 -11.484 16.702 hybrid contribution -0.285 1.152 -0.073 1.189 sum -11.243 -4.042 -11.557 16.623 Atomic orbital electron populations 1.69751 1.07912 1.29876 1.32035 1.26092 0.94797 1.01859 0.91903 0.86183 0.81144 0.80262 0.78821 1.18065 1.19407 1.19701 1.19871 0.98435 0.91182 1.37621 0.89710 1.17788 0.90375 0.92168 0.87149 1.20721 1.04609 0.92665 1.07889 1.20364 0.92935 0.97135 0.93735 1.18910 1.04441 0.91088 1.14263 1.18585 0.78650 0.89609 0.76573 1.90627 1.66560 1.31735 1.57203 1.45810 1.31849 1.08929 1.52382 1.21196 0.93417 0.88400 0.96760 1.22825 0.96502 0.97681 0.85614 1.88018 1.32389 1.81808 1.26974 1.23013 0.90038 0.95006 0.89471 1.23079 1.01373 0.96940 0.97291 1.22321 0.98788 1.00487 0.94518 1.22082 0.99010 0.97048 0.97891 1.22178 1.02061 0.98604 0.93220 1.20480 0.97397 0.92580 0.97607 1.20967 0.99935 0.96885 1.01973 0.90345 0.88400 0.88120 0.76472 0.90651 0.91264 0.92669 0.92084 0.91781 0.91456 0.90024 0.91305 0.91695 0.91423 0.91767 0.90300 0.91477 0.89343 0.86225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.61 10.95 55.56 0.61 -18.01 16 2 C 0.07 1.75 5.14 -17.31 -0.09 1.66 16 3 Si 0.91 17.38 29.60 -169.99 -5.03 12.35 16 4 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 5 H -0.27 -5.04 7.11 56.52 0.40 -4.63 16 6 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 7 C -0.44 -11.15 9.04 -37.75 -0.34 -11.49 16 8 H 0.08 2.04 7.91 -52.49 -0.42 1.63 16 9 C 0.13 3.32 5.58 -106.80 -0.60 2.72 16 10 C -0.24 -5.90 9.73 -39.27 -0.38 -6.28 16 11 C -0.02 -0.54 9.52 -39.61 -0.38 -0.92 16 12 C -0.28 -6.64 5.89 -104.73 -0.62 -7.26 16 13 C 0.57 12.59 7.76 -12.43 -0.10 12.49 16 14 O -0.58 -14.17 16.32 5.28 0.09 -14.09 16 15 N -0.74 -12.94 5.45 -61.31 -0.33 -13.27 16 16 C 0.13 1.82 6.06 -4.04 -0.02 1.79 16 17 C 0.05 0.56 5.92 37.16 0.22 0.78 16 18 O -0.37 -4.66 10.00 -35.23 -0.35 -5.01 16 19 C 0.08 0.82 3.33 -25.07 -0.08 0.73 16 20 C -0.15 -1.42 6.65 -24.55 -0.16 -1.58 16 21 C -0.12 -0.98 6.84 -24.89 -0.17 -1.15 16 22 C -0.12 -0.96 6.80 -25.62 -0.17 -1.14 16 23 C -0.12 -1.12 6.56 -25.62 -0.17 -1.29 16 24 C -0.06 -1.40 9.47 -39.61 -0.38 -1.77 16 25 C -0.18 -4.44 8.63 -39.28 -0.34 -4.78 16 26 H 0.29 6.16 8.29 -40.82 -0.34 5.82 16 27 H 0.10 2.25 8.06 -52.49 -0.42 1.82 16 28 H 0.10 2.35 7.63 -52.49 -0.40 1.95 16 29 H 0.40 6.53 6.47 -40.82 -0.26 6.26 16 30 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 34 H 0.06 0.54 7.84 -51.93 -0.41 0.14 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.43 8.14 -51.92 -0.42 0.00 16 41 H 0.08 0.83 8.07 -51.93 -0.42 0.41 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.09 1.73 6.37 -52.49 -0.33 1.40 16 44 H 0.12 3.01 6.15 -52.49 -0.32 2.68 16 LS Contribution 362.88 15.07 5.47 5.47 Total: -1.00 -29.09 362.88 -10.10 -39.19 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -6.77 Total: 10.84 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: -3.78 Total: -17.47 kcal Atomic # 7 Polarization: -31.55 SS G_CDS: 0.27 Total: -31.28 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: -0.27 Total: -19.10 kcal Atomic # 14 Polarization: 17.38 SS G_CDS: -5.03 Total: 12.35 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.09 -10.10 -39.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340097797.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.690 kcal (2) G-P(sol) polarization free energy of solvation -29.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds