Wall clock time and date at job start Tue Mar 31 2020 08:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30645 * 1 3 3 Si 1.86801 * 120.00113 * 2 1 4 4 H 1.48496 * 109.47041 * 240.00016 * 3 2 1 5 5 H 1.48497 * 109.46978 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46946 * 119.99775 * 3 2 1 7 7 C 1.40229 * 119.99784 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99587 * 197.73174 * 7 2 1 9 9 C 1.41107 * 120.00101 * 17.72871 * 7 2 1 10 10 C 1.40882 * 120.10130 * 24.80680 * 9 7 2 11 11 C 1.36320 * 119.89049 * 180.22956 * 10 9 7 12 12 C 1.40019 * 120.10443 * 359.50133 * 11 10 9 13 13 C 1.47644 * 119.89372 * 180.27875 * 12 11 10 14 14 O 1.21585 * 120.00070 * 359.97438 * 13 12 11 15 15 N 1.34780 * 119.99682 * 179.97438 * 13 12 11 16 16 C 1.46496 * 119.99606 * 179.97438 * 15 13 12 17 17 C 1.53005 * 109.47220 * 180.02562 * 16 15 13 18 18 H 1.09008 * 109.46939 * 54.99476 * 17 16 15 19 19 C 1.52999 * 109.46893 * 295.00078 * 17 16 15 20 20 C 1.53003 * 109.47207 * 179.97438 * 19 17 16 21 21 C 1.52997 * 109.46800 * 60.00114 * 20 19 17 22 22 C 1.52999 * 109.47147 * 299.99922 * 21 20 19 23 23 H 1.09003 * 109.47297 * 300.00435 * 22 21 20 24 24 O 1.42901 * 109.47433 * 180.02562 * 22 21 20 25 25 C 1.52997 * 109.47320 * 175.00066 * 17 16 15 26 26 C 1.40008 * 120.21089 * 0.25035 * 12 11 10 27 27 C 1.36322 * 120.10728 * 0.02562 * 26 12 11 28 28 H 0.97002 * 119.99718 * 0.02562 * 1 2 3 29 29 H 1.08000 * 120.06278 * 359.97438 * 10 9 7 30 30 H 1.08004 * 119.94868 * 179.78130 * 11 10 9 31 31 H 0.96994 * 120.00292 * 0.02562 * 15 13 12 32 32 H 1.09004 * 109.47218 * 299.99594 * 16 15 13 33 33 H 1.08997 * 109.47597 * 59.99875 * 16 15 13 34 34 H 1.09003 * 109.47320 * 300.00004 * 19 17 16 35 35 H 1.09005 * 109.47567 * 59.99816 * 19 17 16 36 36 H 1.08994 * 109.47052 * 299.99916 * 20 19 17 37 37 H 1.08999 * 109.46838 * 180.02562 * 20 19 17 38 38 H 1.08998 * 109.46971 * 180.02562 * 21 20 19 39 39 H 1.08994 * 109.47480 * 60.00063 * 21 20 19 40 40 H 0.96701 * 113.99821 * 59.99744 * 24 22 21 41 41 H 1.09006 * 109.46841 * 299.99592 * 25 17 16 42 42 H 1.08994 * 109.47480 * 59.99997 * 25 17 16 43 43 H 1.07997 * 119.94878 * 180.02562 * 26 12 11 44 44 H 1.07998 * 120.05535 * 179.97438 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 3.0942 1.6964 -1.2125 5 1 1.2755 2.7464 0.0006 6 1 3.0942 1.6964 1.2125 7 6 2.0075 -1.2144 -0.0005 8 1 3.0491 -1.2368 0.2843 9 6 1.3522 -2.4073 -0.3732 10 6 0.2236 -2.3601 -1.2150 11 6 -0.4090 -3.5147 -1.5686 12 6 0.0676 -4.7469 -1.1048 13 6 -0.6175 -5.9951 -1.4956 14 8 -1.5941 -5.9519 -2.2186 15 7 -0.1602 -7.1824 -1.0508 16 6 -0.8403 -8.4208 -1.4381 17 6 -0.1258 -9.6152 -0.8027 18 1 -0.0663 -9.4711 0.2762 19 6 1.2862 -9.7311 -1.3803 20 6 2.0010 -10.9252 -0.7444 21 6 1.2202 -12.2061 -1.0452 22 6 -0.1918 -12.0902 -0.4675 23 1 -0.1324 -11.9457 0.6113 24 8 -0.9209 -13.2868 -0.7478 25 6 -0.9068 -10.8959 -1.1038 26 6 1.1920 -4.7993 -0.2722 27 6 1.8278 -3.6495 0.0912 28 1 -0.4850 0.8401 -0.0004 29 1 -0.1424 -1.4104 -1.5765 30 1 -1.2764 -3.4793 -2.2110 31 1 0.6186 -7.2168 -0.4738 32 1 -1.8739 -8.3908 -1.0934 33 1 -0.8220 -8.5213 -2.5233 34 1 1.2268 -9.8752 -2.4592 35 1 1.8427 -8.8187 -1.1658 36 1 2.0605 -10.7807 0.3342 37 1 3.0071 -11.0074 -1.1557 38 1 1.7291 -13.0567 -0.5918 39 1 1.1607 -12.3506 -2.1238 40 1 -0.5244 -14.0857 -0.3741 41 1 -1.9127 -10.8133 -0.6922 42 1 -0.9662 -11.0401 -2.1826 43 1 1.5562 -5.7520 0.0827 44 1 2.6948 -3.6908 0.7338 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340218370.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:18:19 Heat of formation + Delta-G solvation = -102.927699 kcal Electronic energy + Delta-G solvation = -23870.646674 eV Core-core repulsion = 20364.801293 eV Total energy + Delta-G solvation = -3505.845381 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.72817 -38.79390 -37.14780 -36.21023 -34.04038 -33.86831 -31.48825 -30.13723 -29.73561 -29.32984 -26.51902 -25.07675 -22.71144 -22.10814 -21.46252 -20.70778 -20.19689 -19.49533 -17.55320 -17.49128 -16.76580 -15.76895 -15.52875 -15.29234 -15.00815 -14.76844 -14.25992 -14.00303 -13.90466 -13.64930 -13.26725 -13.01455 -12.77777 -12.63718 -12.31504 -12.21103 -12.08795 -11.85287 -11.57967 -11.39131 -11.29091 -11.22251 -10.99024 -10.90268 -10.78064 -10.61761 -10.45362 -10.07158 -10.02249 -9.53412 -9.33030 -8.96937 -8.57563 -7.69636 -7.56257 -7.01536 -4.59964 2.25044 2.92211 2.95256 2.98425 3.03789 3.62388 3.74352 3.89339 4.04413 4.36628 4.40426 4.58388 4.71929 4.82269 4.91561 5.05233 5.12491 5.19906 5.26744 5.41564 5.56866 5.64250 5.70388 5.72045 5.82809 5.88556 5.91083 5.96555 5.98068 6.03740 6.17595 6.25734 6.30424 6.80702 6.84023 6.97324 7.06954 7.11172 7.33749 7.43977 7.61824 7.79050 7.88078 8.05634 8.26310 8.43481 8.63249 8.75961 9.09752 9.90395 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.035280 B = 0.002448 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.471435 B =11437.008953 C =12000.999435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.074 3.926 3 Si 0.914 3.086 4 H -0.260 1.260 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.444 4.444 8 H 0.084 0.916 9 C 0.128 3.872 10 C -0.183 4.183 11 C -0.036 4.036 12 C -0.283 4.283 13 C 0.570 3.430 14 O -0.573 6.573 15 N -0.742 5.742 16 C 0.130 3.870 17 C -0.095 4.095 18 H 0.078 0.922 19 C -0.119 4.119 20 C -0.117 4.117 21 C -0.151 4.151 22 C 0.106 3.894 23 H 0.055 0.945 24 O -0.569 6.569 25 C -0.104 4.104 26 C -0.049 4.049 27 C -0.236 4.236 28 H 0.288 0.712 29 H 0.121 0.879 30 H 0.100 0.900 31 H 0.395 0.605 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.070 0.930 40 H 0.376 0.624 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.088 0.912 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.780 -17.500 1.200 17.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.148 4.148 3 Si 0.738 3.262 4 H -0.185 1.185 5 H -0.200 1.200 6 H -0.187 1.187 7 C -0.471 4.471 8 H 0.102 0.898 9 C 0.125 3.875 10 C -0.202 4.202 11 C -0.055 4.055 12 C -0.288 4.288 13 C 0.365 3.635 14 O -0.455 6.455 15 N -0.396 5.396 16 C 0.005 3.995 17 C -0.114 4.114 18 H 0.097 0.903 19 C -0.157 4.157 20 C -0.155 4.155 21 C -0.189 4.189 22 C 0.047 3.953 23 H 0.073 0.927 24 O -0.375 6.375 25 C -0.142 4.142 26 C -0.068 4.068 27 C -0.255 4.255 28 H 0.099 0.901 29 H 0.138 0.862 30 H 0.118 0.882 31 H 0.231 0.769 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.089 0.911 40 H 0.223 0.777 41 H 0.091 0.909 42 H 0.092 0.908 43 H 0.106 0.894 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.468 -16.890 0.387 17.074 hybrid contribution 1.118 0.292 0.717 1.360 sum 3.586 -16.598 1.104 17.017 Atomic orbital electron populations 1.69742 1.07916 1.30229 1.31335 1.26110 0.94814 1.01898 0.91986 0.86260 0.80193 0.79517 0.80280 1.18470 1.20038 1.18705 1.19799 0.98284 0.91240 1.37816 0.89801 1.17775 0.90492 0.92093 0.87138 1.21019 0.99985 0.97031 1.02177 1.20488 0.97093 0.91558 0.96390 1.18919 1.03745 0.91844 1.14253 1.18601 0.82950 0.83394 0.78583 1.90640 1.28194 1.87606 1.39084 1.45908 1.33863 1.05664 1.54117 1.21168 0.96085 0.82762 0.99453 1.21337 0.95248 0.93874 1.00953 0.90349 1.21661 0.95008 0.98336 1.00650 1.21482 0.98842 0.94077 1.01070 1.22277 0.96060 0.98308 1.02268 1.21812 0.90320 0.85203 0.97966 0.92718 1.86525 1.53830 1.17134 1.79978 1.21425 0.99166 0.91688 1.01955 1.20342 0.94298 0.96464 0.95706 1.20663 1.04339 0.92804 1.07716 0.90098 0.86168 0.88188 0.76930 0.91965 0.91947 0.91447 0.91198 0.91763 0.91523 0.91962 0.91088 0.77726 0.90895 0.90839 0.89379 0.88526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.86 10.95 55.56 0.61 -18.25 16 2 C 0.07 1.73 5.14 -17.31 -0.09 1.64 16 3 Si 0.91 17.38 29.60 -169.99 -5.03 12.35 16 4 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 5 H -0.28 -5.12 7.11 56.52 0.40 -4.72 16 6 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 7 C -0.44 -11.01 9.04 -37.75 -0.34 -11.35 16 8 H 0.08 1.96 7.91 -52.49 -0.42 1.54 16 9 C 0.13 3.26 5.57 -106.80 -0.60 2.67 16 10 C -0.18 -4.69 8.63 -39.27 -0.34 -5.03 16 11 C -0.04 -0.89 9.52 -39.61 -0.38 -1.26 16 12 C -0.28 -6.48 5.89 -104.73 -0.62 -7.10 16 13 C 0.57 12.18 7.76 -12.42 -0.10 12.09 16 14 O -0.57 -14.00 16.32 5.29 0.09 -13.91 16 15 N -0.74 -12.01 5.23 -61.31 -0.32 -12.33 16 16 C 0.13 1.77 5.06 -4.04 -0.02 1.75 16 17 C -0.10 -0.95 2.22 -90.62 -0.20 -1.16 16 18 H 0.08 0.75 8.14 -51.92 -0.42 0.33 16 19 C -0.12 -1.11 5.08 -26.73 -0.14 -1.24 16 20 C -0.12 -0.89 5.92 -26.73 -0.16 -1.05 16 21 C -0.15 -1.10 5.54 -26.73 -0.15 -1.25 16 22 C 0.11 0.88 3.47 -26.71 -0.09 0.79 16 23 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 24 O -0.57 -5.04 13.32 -35.23 -0.47 -5.51 16 25 C -0.10 -1.01 4.86 -26.71 -0.13 -1.14 16 26 C -0.05 -1.03 9.47 -39.61 -0.38 -1.41 16 27 C -0.24 -5.42 9.73 -39.27 -0.38 -5.80 16 28 H 0.29 6.38 8.29 -40.82 -0.34 6.04 16 29 H 0.12 3.15 6.16 -52.49 -0.32 2.83 16 30 H 0.10 2.44 7.63 -52.48 -0.40 2.04 16 31 H 0.40 5.56 5.66 -40.82 -0.23 5.32 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.68 7.18 -51.93 -0.37 0.31 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.38 1.70 9.08 45.56 0.41 2.12 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.09 1.51 6.37 -52.49 -0.33 1.17 16 44 H 0.10 2.03 8.06 -52.49 -0.42 1.61 16 LS Contribution 355.58 15.07 5.36 5.36 Total: -1.00 -29.81 355.58 -9.74 -39.55 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -5.87 Total: 11.60 kcal Atomic # 6 Polarization: -14.75 SS G_CDS: -4.10 Total: -18.85 kcal Atomic # 7 Polarization: -30.87 SS G_CDS: 0.29 Total: -30.58 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: -0.38 Total: -19.42 kcal Atomic # 14 Polarization: 17.38 SS G_CDS: -5.03 Total: 12.35 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.81 -9.74 -39.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340218370.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.381 kcal (2) G-P(sol) polarization free energy of solvation -29.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds