Wall clock time and date at job start Tue Mar 31 2020 08:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30647 * 1 3 3 Si 1.86800 * 120.00187 * 2 1 4 4 H 1.48507 * 109.46953 * 239.99664 * 3 2 1 5 5 H 1.48498 * 109.47032 * 120.00071 * 3 2 1 6 6 H 1.48491 * 109.47318 * 359.97438 * 3 2 1 7 7 C 1.40230 * 119.99501 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99812 * 206.87595 * 7 2 1 9 9 C 1.41107 * 120.00116 * 26.87958 * 7 2 1 10 10 C 1.40888 * 120.10329 * 205.14746 * 9 7 2 11 11 C 1.36320 * 119.88864 * 179.78401 * 10 9 7 12 12 C 1.40003 * 120.10986 * 0.48869 * 11 10 9 13 13 C 1.47645 * 119.89979 * 179.71707 * 12 11 10 14 14 O 1.21581 * 120.00234 * 180.02562 * 13 12 11 15 15 N 1.34775 * 119.99274 * 0.02562 * 13 12 11 16 16 C 1.46511 * 119.99621 * 180.02562 * 15 13 12 17 17 C 1.52999 * 109.46888 * 180.02562 * 16 15 13 18 18 H 1.08999 * 109.47385 * 54.99558 * 17 16 15 19 19 C 1.53008 * 109.46778 * 294.99621 * 17 16 15 20 20 C 1.53001 * 109.46909 * 180.02562 * 19 17 16 21 21 C 1.53006 * 109.47303 * 59.99725 * 20 19 17 22 22 C 1.53000 * 109.46916 * 300.00087 * 21 20 19 23 23 H 1.09002 * 109.46728 * 179.97438 * 22 21 20 24 24 O 1.42902 * 109.47270 * 299.99711 * 22 21 20 25 25 C 1.52999 * 109.47074 * 60.00394 * 22 21 20 26 26 C 1.40016 * 120.20836 * 359.74063 * 12 11 10 27 27 C 1.36315 * 120.10601 * 0.02562 * 26 12 11 28 28 H 0.96989 * 120.00688 * 184.15100 * 1 2 3 29 29 H 1.07997 * 120.05200 * 0.02562 * 10 9 7 30 30 H 1.08000 * 119.94363 * 180.20699 * 11 10 9 31 31 H 0.97000 * 120.00600 * 0.02562 * 15 13 12 32 32 H 1.08995 * 109.46716 * 299.99941 * 16 15 13 33 33 H 1.08988 * 109.46965 * 59.99881 * 16 15 13 34 34 H 1.08999 * 109.47111 * 300.00105 * 19 17 16 35 35 H 1.08994 * 109.47063 * 60.00207 * 19 17 16 36 36 H 1.08994 * 109.47214 * 180.02562 * 20 19 17 37 37 H 1.09004 * 109.47241 * 299.99997 * 20 19 17 38 38 H 1.08998 * 109.46432 * 60.00236 * 21 20 19 39 39 H 1.09002 * 109.46920 * 179.97438 * 21 20 19 40 40 H 0.96697 * 113.99809 * 300.00629 * 24 22 21 41 41 H 1.08998 * 109.47103 * 179.97438 * 25 22 21 42 42 H 1.08993 * 109.47328 * 59.99273 * 25 22 21 43 43 H 1.08002 * 119.94498 * 179.97438 * 26 12 11 44 44 H 1.08004 * 120.05423 * 179.97438 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 3.0944 1.6963 -1.2125 5 1 3.0943 1.6963 1.2125 6 1 1.2757 2.7464 -0.0006 7 6 2.0075 -1.2145 0.0005 8 1 3.0000 -1.2649 0.4234 9 6 1.4162 -2.3707 -0.5514 10 6 1.8212 -3.6480 -0.1161 11 6 1.2439 -4.7620 -0.6492 12 6 0.2575 -4.6385 -1.6350 13 6 -0.3602 -5.8483 -2.2136 14 8 -1.2167 -5.7433 -3.0701 15 7 0.0255 -7.0690 -1.7922 16 6 -0.5870 -8.2696 -2.3668 17 6 0.0241 -9.5137 -1.7190 18 1 -0.0806 -9.4481 -0.6360 19 6 1.5075 -9.6020 -2.0836 20 6 2.1185 -10.8464 -1.4363 21 6 1.3931 -12.0941 -1.9446 22 6 -0.0902 -12.0056 -1.5800 23 1 -0.6070 -12.8942 -1.9425 24 8 -0.2274 -11.9202 -0.1602 25 6 -0.7012 -10.7613 -2.2274 26 6 -0.1448 -3.3714 -2.0742 27 6 0.4232 -2.2516 -1.5437 28 1 -0.4850 -0.8377 0.0608 29 1 2.5849 -3.7443 0.6414 30 1 1.5513 -5.7414 -0.3137 31 1 0.7085 -7.1528 -1.1086 32 1 -1.6609 -8.2539 -2.1809 33 1 -0.4045 -8.2919 -3.4410 34 1 1.6121 -9.6676 -3.1666 35 1 2.0241 -8.7130 -1.7218 36 1 3.1753 -10.9092 -1.6957 37 1 2.0138 -10.7813 -0.3533 38 1 1.4979 -12.1592 -3.0276 39 1 1.8288 -12.9806 -1.4838 40 1 0.1390 -12.6774 0.3166 41 1 -1.7580 -10.6985 -1.9680 42 1 -0.5964 -10.8265 -3.3103 43 1 -0.9059 -3.2811 -2.8352 44 1 0.1126 -1.2746 -1.8835 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340218371.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:18:22 Heat of formation + Delta-G solvation = -107.631538 kcal Electronic energy + Delta-G solvation = -24088.879179 eV Core-core repulsion = 20582.829824 eV Total energy + Delta-G solvation = -3506.049355 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.79917 -38.88481 -37.33163 -35.88751 -34.06788 -33.87198 -31.44296 -30.12544 -29.92784 -29.34935 -26.37535 -25.02426 -22.81213 -22.10158 -21.42178 -20.84252 -20.10067 -19.54141 -18.11433 -17.22039 -16.85562 -15.79696 -15.69073 -15.04663 -14.72571 -14.63449 -14.36905 -14.12013 -13.76662 -13.66069 -13.59661 -12.93861 -12.64009 -12.50406 -12.32924 -12.24847 -12.16993 -12.05410 -11.75428 -11.48503 -11.23310 -11.10196 -11.00074 -10.92771 -10.63477 -10.50902 -10.29404 -9.94313 -9.89758 -9.66904 -9.17767 -8.99652 -8.57742 -7.91576 -7.73246 -7.43406 -4.68333 2.20164 2.86026 3.03367 3.09130 3.26178 3.79185 3.84182 3.86204 3.96498 4.40995 4.44701 4.52640 4.61419 4.86623 5.00026 5.06005 5.19605 5.24520 5.31264 5.39807 5.49928 5.64396 5.67065 5.73008 5.76620 5.88236 5.93009 5.95700 6.03251 6.07493 6.16358 6.19831 6.36157 6.64810 6.82618 6.93213 6.99480 7.21189 7.37542 7.47008 7.56079 7.57581 7.69826 7.97371 8.11677 8.23402 8.53370 8.65198 9.07142 9.78476 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.031469 B = 0.002568 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.555383 B =10900.459828 C =11374.624172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.035 3.965 3 Si 1.068 2.932 4 H -0.271 1.271 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.496 4.496 8 H 0.083 0.917 9 C 0.109 3.891 10 C -0.236 4.236 11 C -0.041 4.041 12 C -0.295 4.295 13 C 0.571 3.429 14 O -0.575 6.575 15 N -0.741 5.741 16 C 0.128 3.872 17 C -0.094 4.094 18 H 0.085 0.915 19 C -0.116 4.116 20 C -0.115 4.115 21 C -0.152 4.152 22 C 0.106 3.894 23 H 0.053 0.947 24 O -0.562 6.562 25 C -0.105 4.105 26 C -0.015 4.015 27 C -0.237 4.237 28 H 0.305 0.695 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.395 0.605 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.062 0.938 40 H 0.374 0.626 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.102 0.898 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.468 -19.261 -0.786 19.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.190 4.190 3 Si 0.890 3.110 4 H -0.196 1.196 5 H -0.198 1.198 6 H -0.196 1.196 7 C -0.522 4.522 8 H 0.101 0.899 9 C 0.105 3.895 10 C -0.255 4.255 11 C -0.060 4.060 12 C -0.299 4.299 13 C 0.365 3.635 14 O -0.457 6.457 15 N -0.394 5.394 16 C 0.003 3.997 17 C -0.113 4.113 18 H 0.103 0.897 19 C -0.153 4.153 20 C -0.153 4.153 21 C -0.190 4.190 22 C 0.047 3.953 23 H 0.071 0.929 24 O -0.367 6.367 25 C -0.143 4.143 26 C -0.035 4.035 27 C -0.256 4.256 28 H 0.119 0.881 29 H 0.116 0.884 30 H 0.108 0.892 31 H 0.231 0.769 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.080 0.920 40 H 0.220 0.780 41 H 0.090 0.910 42 H 0.096 0.904 43 H 0.120 0.880 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 2.290 -16.990 -1.592 17.217 hybrid contribution 0.820 -2.439 0.491 2.620 sum 3.110 -19.428 -1.101 19.707 Atomic orbital electron populations 1.70394 1.08393 1.34916 1.25450 1.27279 0.95622 1.04793 0.91308 0.83591 0.75729 0.73377 0.78286 1.19649 1.19842 1.19565 1.20855 1.03793 0.94258 1.33296 0.89922 1.17807 0.89951 0.92617 0.89089 1.20610 1.06861 0.92500 1.05558 1.20388 0.94508 0.96651 0.94416 1.18859 1.09247 0.91950 1.09876 1.18531 0.81026 0.83050 0.80867 1.90634 1.33997 1.87221 1.33893 1.45901 1.43959 1.05406 1.44115 1.21236 0.97285 0.83572 0.97566 1.21303 0.94928 0.93412 1.01620 0.89673 1.21608 0.95067 0.97946 1.00695 1.21439 0.98696 0.94020 1.01099 1.22258 0.96280 0.98581 1.01881 1.21761 0.94425 0.97680 0.81398 0.92896 1.86564 1.83733 1.48239 1.18146 1.21511 1.00091 0.92909 0.99740 1.20415 0.95725 0.91419 0.95905 1.20847 1.05105 0.97262 1.02374 0.88138 0.88448 0.89185 0.76931 0.92166 0.92234 0.91925 0.91580 0.92152 0.91306 0.91083 0.91973 0.77965 0.90970 0.90421 0.87980 0.87426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.62 12.37 55.56 0.69 -18.94 16 2 C 0.04 0.85 4.90 -17.31 -0.08 0.76 16 3 Si 1.07 20.27 30.01 -169.99 -5.10 15.17 16 4 H -0.27 -5.00 7.11 56.52 0.40 -4.59 16 5 H -0.27 -4.88 7.11 56.52 0.40 -4.47 16 6 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 7 C -0.50 -12.45 8.97 -37.75 -0.34 -12.79 16 8 H 0.08 1.98 7.98 -52.49 -0.42 1.57 16 9 C 0.11 2.78 5.30 -106.80 -0.57 2.21 16 10 C -0.24 -5.50 9.73 -39.27 -0.38 -5.88 16 11 C -0.04 -0.87 9.47 -39.61 -0.38 -1.25 16 12 C -0.29 -6.81 5.89 -104.73 -0.62 -7.42 16 13 C 0.57 12.38 7.76 -12.42 -0.10 12.28 16 14 O -0.58 -14.14 16.32 5.29 0.09 -14.05 16 15 N -0.74 -12.46 5.23 -61.31 -0.32 -12.78 16 16 C 0.13 1.82 5.06 -4.04 -0.02 1.80 16 17 C -0.09 -1.03 2.08 -90.61 -0.19 -1.22 16 18 H 0.08 1.04 7.68 -51.93 -0.40 0.64 16 19 C -0.12 -1.16 5.08 -26.73 -0.14 -1.30 16 20 C -0.12 -0.96 5.78 -26.73 -0.15 -1.12 16 21 C -0.15 -1.06 5.64 -26.73 -0.15 -1.21 16 22 C 0.11 0.82 3.77 -26.73 -0.10 0.72 16 23 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 24 O -0.56 -4.83 11.97 -35.23 -0.42 -5.26 16 25 C -0.10 -0.97 4.94 -26.73 -0.13 -1.10 16 26 C -0.02 -0.38 9.52 -39.61 -0.38 -0.75 16 27 C -0.24 -6.03 7.91 -39.27 -0.31 -6.34 16 28 H 0.30 8.02 6.72 -40.82 -0.27 7.74 16 29 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 30 H 0.09 1.59 6.37 -52.49 -0.33 1.26 16 31 H 0.40 5.92 5.65 -40.82 -0.23 5.68 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.06 0.88 8.14 -51.94 -0.42 0.45 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.72 7.18 -51.93 -0.37 0.35 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.62 7.68 -51.93 -0.40 0.22 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.37 1.73 9.08 45.56 0.41 2.15 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.10 2.47 7.63 -52.49 -0.40 2.07 16 44 H 0.11 2.80 6.53 -52.48 -0.34 2.45 16 LS Contribution 352.86 15.07 5.32 5.32 Total: -1.00 -29.97 352.86 -9.56 -39.54 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: -5.78 Total: 13.60 kcal Atomic # 6 Polarization: -18.56 SS G_CDS: -4.03 Total: -22.59 kcal Atomic # 7 Polarization: -32.09 SS G_CDS: 0.37 Total: -31.72 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: -0.34 Total: -19.31 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.10 Total: 15.17 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.97 -9.56 -39.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340218371.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.095 kcal (2) G-P(sol) polarization free energy of solvation -29.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds