Wall clock time and date at job start Tue Mar 31 2020 08:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00472 * 2 1 4 4 H 1.48502 * 109.47124 * 274.21714 * 3 2 1 5 5 H 1.48502 * 109.46805 * 34.21561 * 3 2 1 6 6 H 1.48494 * 109.47336 * 154.21498 * 3 2 1 7 7 C 1.37879 * 119.99601 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00234 * 4.82463 * 7 2 1 9 9 C 1.50705 * 119.99629 * 184.82258 * 7 2 1 10 10 H 1.09002 * 109.47160 * 335.06169 * 9 7 2 11 11 C 1.53005 * 109.46946 * 215.06159 * 9 7 2 12 12 C 1.50707 * 109.46720 * 64.67231 * 11 9 7 13 13 O 1.21272 * 119.99971 * 0.02562 * 12 11 9 14 14 N 1.34777 * 119.99557 * 179.97438 * 12 11 9 15 15 C 1.46501 * 119.99810 * 175.23399 * 14 12 11 16 16 C 1.52991 * 115.55215 * 302.26982 * 15 14 12 17 17 C 1.53010 * 109.47032 * 301.40898 * 16 15 14 18 18 O 1.42895 * 109.46911 * 185.00739 * 17 16 15 19 19 C 1.52997 * 117.49731 * 156.59203 * 15 14 12 20 20 C 1.52999 * 117.49694 * 87.93814 * 15 14 12 21 21 C 1.50702 * 109.47191 * 95.06540 * 9 7 2 22 22 C 1.38236 * 119.99942 * 234.74799 * 21 9 7 23 23 C 1.38233 * 120.00093 * 179.97438 * 22 21 9 24 24 C 1.38234 * 119.99868 * 359.95667 * 23 22 21 25 25 C 1.38237 * 120.00122 * 359.97438 * 24 23 22 26 26 C 1.38233 * 120.00086 * 0.06768 * 25 24 23 27 27 H 0.97000 * 119.99452 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.47055 * 184.67064 * 11 9 7 29 29 H 1.09002 * 109.47208 * 304.67314 * 11 9 7 30 30 H 0.96995 * 120.00404 * 355.23670 * 14 12 11 31 31 H 1.08999 * 109.47624 * 61.40703 * 16 15 14 32 32 H 1.09001 * 109.47501 * 181.41521 * 16 15 14 33 33 H 1.08993 * 109.47022 * 305.01305 * 17 16 15 34 34 H 1.09001 * 109.46852 * 65.01116 * 17 16 15 35 35 H 0.96709 * 113.99603 * 179.97438 * 18 17 16 36 36 H 1.09001 * 117.49865 * 0.02562 * 19 15 14 37 37 H 1.09006 * 117.49702 * 145.02092 * 19 15 14 38 38 H 1.09001 * 117.50351 * 214.98176 * 20 15 14 39 39 H 1.09008 * 117.50106 * 359.97438 * 20 15 14 40 40 H 1.07999 * 119.99988 * 359.97438 * 22 21 9 41 41 H 1.07993 * 120.00019 * 179.97438 * 23 22 21 42 42 H 1.08001 * 120.00018 * 179.71893 * 24 23 22 43 43 H 1.07999 * 120.00071 * 179.97438 * 25 24 23 44 44 H 1.08001 * 120.00424 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4076 2.0978 -1.3963 5 1 1.4941 2.6252 0.7873 6 1 3.5885 1.4160 0.6090 7 6 2.0044 -1.1941 0.0005 8 1 1.4673 -2.1277 -0.0777 9 6 3.5075 -1.1964 0.1103 10 1 3.9000 -0.2479 -0.2563 11 6 4.0783 -2.3425 -0.7275 12 6 3.7782 -2.0978 -2.1840 13 8 3.1684 -1.1045 -2.5189 14 7 4.1884 -2.9825 -3.1143 15 6 3.8077 -2.7997 -4.5171 16 6 2.3035 -2.7403 -4.7903 17 6 1.6450 -4.0320 -4.3012 18 8 0.2619 -4.0270 -4.6604 19 6 4.6936 -3.4521 -5.5803 20 6 4.7188 -1.9336 -5.3893 21 6 3.9057 -1.3813 1.5519 22 6 4.7469 -0.4679 2.1593 23 6 5.1117 -0.6372 3.4818 24 6 4.6346 -1.7195 4.1972 25 6 3.7922 -2.6322 3.5903 26 6 3.4281 -2.4634 2.2675 27 1 -0.4849 0.8401 -0.0004 28 1 5.1572 -2.3959 -0.5828 29 1 3.6228 -3.2824 -0.4156 30 1 4.7357 -3.7402 -2.8551 31 1 1.8716 -1.8900 -4.2626 32 1 2.1328 -2.6284 -5.8610 33 1 2.1372 -4.8880 -4.7626 34 1 1.7386 -4.0997 -3.2173 35 1 -0.2197 -4.8179 -4.3816 36 1 5.5595 -4.0176 -5.2360 37 1 4.2048 -3.8388 -6.4746 38 1 4.2466 -1.3218 -6.1580 39 1 5.6013 -1.4994 -4.9192 40 1 5.1191 0.3780 1.6005 41 1 5.7692 0.0761 3.9561 42 1 4.9232 -1.8543 5.2292 43 1 3.4198 -3.4780 4.1492 44 1 2.7703 -3.1766 1.7932 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349259011.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:39 Heat of formation + Delta-G solvation = -40.625931 kcal Electronic energy + Delta-G solvation = -25182.106510 eV Core-core repulsion = 21678.962736 eV Total energy + Delta-G solvation = -3503.143774 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.68248 -38.60160 -37.30693 -36.29113 -34.04184 -32.43783 -31.58082 -30.25173 -30.19828 -28.87536 -25.94286 -23.37007 -22.80123 -22.34505 -21.87992 -20.89593 -19.30005 -19.03641 -17.22942 -16.92908 -16.62502 -16.14436 -15.71930 -14.89119 -14.72062 -14.55573 -14.28624 -14.03150 -13.71000 -13.62993 -13.23503 -12.73804 -12.52523 -12.48950 -12.22631 -11.96193 -11.83905 -11.79839 -11.53308 -11.28695 -11.07068 -10.77818 -10.60809 -10.51522 -10.35967 -10.04871 -9.85926 -9.72753 -9.53964 -9.13132 -8.83436 -8.55982 -8.36595 -8.20614 -7.81430 -5.95472 -3.92234 2.10024 2.15037 3.36175 3.44361 3.48199 3.52671 3.54120 3.79575 4.27778 4.53274 4.60062 4.81867 4.98056 5.09562 5.27803 5.35929 5.47182 5.52178 5.53775 5.56419 5.60888 5.69293 5.74275 5.86454 5.92500 5.96998 6.00786 6.08224 6.10984 6.17618 6.24816 6.33362 6.56676 6.62095 6.69996 6.83982 6.95779 7.03688 7.14650 7.27820 7.58713 7.73611 7.80807 7.84262 8.03544 8.55154 9.01565 9.04431 9.69704 11.17425 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.013872 B = 0.004863 C = 0.004452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.032248 B = 5756.108198 C = 6287.129657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.086 3.914 3 Si 0.874 3.126 4 H -0.276 1.276 5 H -0.296 1.296 6 H -0.260 1.260 7 C -0.486 4.486 8 H 0.070 0.930 9 C 0.054 3.946 10 H 0.052 0.948 11 C -0.117 4.117 12 C 0.516 3.484 13 O -0.488 6.488 14 N -0.720 5.720 15 C 0.120 3.880 16 C -0.093 4.093 17 C 0.086 3.914 18 O -0.573 6.573 19 C -0.179 4.179 20 C -0.175 4.175 21 C -0.038 4.038 22 C -0.137 4.137 23 C -0.127 4.127 24 C -0.150 4.150 25 C -0.128 4.128 26 C -0.101 4.101 27 H 0.261 0.739 28 H 0.067 0.933 29 H 0.083 0.917 30 H 0.394 0.606 31 H 0.098 0.902 32 H 0.072 0.928 33 H 0.037 0.963 34 H 0.049 0.951 35 H 0.376 0.624 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.111 0.889 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.110 0.890 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.105 -9.793 -4.806 15.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.116 4.116 3 Si 0.702 3.298 4 H -0.202 1.202 5 H -0.223 1.223 6 H -0.184 1.184 7 C -0.523 4.523 8 H 0.088 0.912 9 C 0.035 3.965 10 H 0.070 0.930 11 C -0.157 4.157 12 C 0.302 3.698 13 O -0.359 6.359 14 N -0.375 5.375 15 C 0.032 3.968 16 C -0.131 4.131 17 C 0.008 3.992 18 O -0.378 6.378 19 C -0.217 4.217 20 C -0.213 4.213 21 C -0.039 4.039 22 C -0.155 4.155 23 C -0.145 4.145 24 C -0.168 4.168 25 C -0.146 4.146 26 C -0.119 4.119 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.101 0.899 30 H 0.228 0.772 31 H 0.116 0.884 32 H 0.091 0.909 33 H 0.055 0.945 34 H 0.067 0.933 35 H 0.223 0.777 36 H 0.114 0.886 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.115 0.885 40 H 0.129 0.871 41 H 0.126 0.874 42 H 0.125 0.875 43 H 0.128 0.872 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 10.611 -8.325 -5.276 14.482 hybrid contribution 0.463 0.017 0.471 0.661 sum 11.074 -8.308 -4.805 14.654 Atomic orbital electron populations 1.69895 1.06396 1.26755 1.50426 1.24876 0.94460 0.98814 0.93475 0.86908 0.80584 0.84065 0.78245 1.20192 1.22279 1.18426 1.20543 0.87452 0.94371 1.49935 0.91209 1.18185 0.97890 0.94266 0.86191 0.93019 1.21683 1.00185 1.02525 0.91306 1.20842 0.78615 0.82626 0.87685 1.90730 1.36809 1.26915 1.81417 1.45631 1.56612 1.29921 1.05381 1.20321 0.91509 1.04550 0.80457 1.21207 0.90947 0.99224 1.01728 1.22005 0.81309 0.96990 0.98898 1.86480 1.22272 1.46374 1.82682 1.23332 1.01825 0.96372 1.00136 1.23332 1.02302 0.92911 1.02765 1.20758 0.91495 0.92526 0.99103 1.21152 0.99452 0.99816 0.95098 1.20964 1.00796 0.97922 0.94790 1.20859 1.00527 0.96286 0.99115 1.21052 0.98873 0.99211 0.95439 1.20965 0.98822 0.98466 0.93628 0.92903 0.91499 0.89858 0.77186 0.88371 0.90911 0.94487 0.93252 0.77747 0.88566 0.88101 0.88345 0.88549 0.87058 0.87410 0.87459 0.87227 0.86287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.15 13.96 55.43 0.77 -27.38 16 2 C 0.09 2.53 5.47 -17.82 -0.10 2.44 16 3 Si 0.87 22.95 27.29 -169.99 -4.64 18.31 16 4 H -0.28 -7.45 7.11 56.52 0.40 -7.05 16 5 H -0.30 -7.80 7.11 56.52 0.40 -7.40 16 6 H -0.26 -6.29 4.88 56.52 0.28 -6.01 16 7 C -0.49 -13.23 6.81 -34.44 -0.23 -13.46 16 8 H 0.07 2.06 8.06 -52.49 -0.42 1.63 16 9 C 0.05 1.22 1.25 -92.92 -0.12 1.10 16 10 H 0.05 1.25 4.64 -51.93 -0.24 1.01 16 11 C -0.12 -2.11 4.98 -27.88 -0.14 -2.25 16 12 C 0.52 9.77 7.38 -10.98 -0.08 9.69 16 13 O -0.49 -11.71 13.53 5.56 0.08 -11.64 16 14 N -0.72 -10.24 5.17 -47.61 -0.25 -10.49 16 15 C 0.12 1.64 1.82 -131.83 -0.24 1.40 16 16 C -0.09 -1.47 5.27 -26.73 -0.14 -1.61 16 17 C 0.09 1.25 6.89 37.16 0.26 1.51 16 18 O -0.57 -8.85 13.66 -35.23 -0.48 -9.33 16 19 C -0.18 -1.79 10.16 -26.70 -0.27 -2.06 16 20 C -0.17 -2.17 10.17 -26.70 -0.27 -2.44 16 21 C -0.04 -0.79 4.77 -104.62 -0.50 -1.29 16 22 C -0.14 -2.68 9.17 -39.58 -0.36 -3.04 16 23 C -0.13 -2.16 10.05 -39.58 -0.40 -2.56 16 24 C -0.15 -2.43 10.05 -39.58 -0.40 -2.83 16 25 C -0.13 -2.17 10.05 -39.58 -0.40 -2.56 16 26 C -0.10 -1.95 8.88 -39.58 -0.35 -2.30 16 27 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 28 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.08 1.41 7.89 -51.93 -0.41 1.00 16 30 H 0.39 4.26 8.83 -40.82 -0.36 3.90 16 31 H 0.10 2.03 6.74 -51.93 -0.35 1.68 16 32 H 0.07 1.04 8.11 -51.93 -0.42 0.62 16 33 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.05 0.79 8.03 -51.93 -0.42 0.38 16 35 H 0.38 3.95 9.12 45.56 0.42 4.36 16 36 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.10 1.21 8.14 -51.92 -0.42 0.79 16 40 H 0.11 2.14 7.01 -52.49 -0.37 1.77 16 41 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 42 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 43 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 44 H 0.12 2.28 7.81 -52.49 -0.41 1.87 16 LS Contribution 363.45 15.07 5.48 5.48 Total: -1.00 -34.95 363.45 -8.83 -43.79 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -6.05 Total: 11.54 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: -3.74 Total: -20.28 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: 0.53 Total: -37.87 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: -0.41 Total: -20.97 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -4.64 Total: 18.31 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.95 -8.83 -43.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349259011.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.160 kcal (2) G-P(sol) polarization free energy of solvation -34.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds