Wall clock time and date at job start Tue Mar 31 2020 08:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00472 * 2 1 4 4 H 1.48502 * 109.47124 * 274.21714 * 3 2 1 5 5 H 1.48502 * 109.46805 * 34.21561 * 3 2 1 6 6 H 1.48494 * 109.47336 * 154.21498 * 3 2 1 7 7 C 1.37879 * 119.99601 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00234 * 4.82463 * 7 2 1 9 9 C 1.50705 * 119.99629 * 184.82258 * 7 2 1 10 10 H 1.09002 * 109.47160 * 335.06169 * 9 7 2 11 11 C 1.53005 * 109.46946 * 215.06159 * 9 7 2 12 12 C 1.50707 * 109.46720 * 64.67231 * 11 9 7 13 13 O 1.21272 * 119.99971 * 0.02562 * 12 11 9 14 14 N 1.34777 * 119.99557 * 179.97438 * 12 11 9 15 15 C 1.46501 * 119.99810 * 175.23399 * 14 12 11 16 16 C 1.52991 * 115.55215 * 302.26982 * 15 14 12 17 17 C 1.53010 * 109.47032 * 301.40898 * 16 15 14 18 18 O 1.42895 * 109.46911 * 185.00739 * 17 16 15 19 19 C 1.52997 * 117.49731 * 156.59203 * 15 14 12 20 20 C 1.52999 * 117.49694 * 87.93814 * 15 14 12 21 21 C 1.50702 * 109.47191 * 95.06540 * 9 7 2 22 22 C 1.38236 * 119.99942 * 234.74799 * 21 9 7 23 23 C 1.38233 * 120.00093 * 179.97438 * 22 21 9 24 24 C 1.38234 * 119.99868 * 359.95667 * 23 22 21 25 25 C 1.38237 * 120.00122 * 359.97438 * 24 23 22 26 26 C 1.38233 * 120.00086 * 0.06768 * 25 24 23 27 27 H 0.97000 * 119.99452 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.47055 * 184.67064 * 11 9 7 29 29 H 1.09002 * 109.47208 * 304.67314 * 11 9 7 30 30 H 0.96995 * 120.00404 * 355.23670 * 14 12 11 31 31 H 1.08999 * 109.47624 * 61.40703 * 16 15 14 32 32 H 1.09001 * 109.47501 * 181.41521 * 16 15 14 33 33 H 1.08993 * 109.47022 * 305.01305 * 17 16 15 34 34 H 1.09001 * 109.46852 * 65.01116 * 17 16 15 35 35 H 0.96709 * 113.99603 * 179.97438 * 18 17 16 36 36 H 1.09001 * 117.49865 * 0.02562 * 19 15 14 37 37 H 1.09006 * 117.49702 * 145.02092 * 19 15 14 38 38 H 1.09001 * 117.50351 * 214.98176 * 20 15 14 39 39 H 1.09008 * 117.50106 * 359.97438 * 20 15 14 40 40 H 1.07999 * 119.99988 * 359.97438 * 22 21 9 41 41 H 1.07993 * 120.00019 * 179.97438 * 23 22 21 42 42 H 1.08001 * 120.00018 * 179.71893 * 24 23 22 43 43 H 1.07999 * 120.00071 * 179.97438 * 25 24 23 44 44 H 1.08001 * 120.00424 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4076 2.0978 -1.3963 5 1 1.4941 2.6252 0.7873 6 1 3.5885 1.4160 0.6090 7 6 2.0044 -1.1941 0.0005 8 1 1.4673 -2.1277 -0.0777 9 6 3.5075 -1.1964 0.1103 10 1 3.9000 -0.2479 -0.2563 11 6 4.0783 -2.3425 -0.7275 12 6 3.7782 -2.0978 -2.1840 13 8 3.1684 -1.1045 -2.5189 14 7 4.1884 -2.9825 -3.1143 15 6 3.8077 -2.7997 -4.5171 16 6 2.3035 -2.7403 -4.7903 17 6 1.6450 -4.0320 -4.3012 18 8 0.2619 -4.0270 -4.6604 19 6 4.6936 -3.4521 -5.5803 20 6 4.7188 -1.9336 -5.3893 21 6 3.9057 -1.3813 1.5519 22 6 4.7469 -0.4679 2.1593 23 6 5.1117 -0.6372 3.4818 24 6 4.6346 -1.7195 4.1972 25 6 3.7922 -2.6322 3.5903 26 6 3.4281 -2.4634 2.2675 27 1 -0.4849 0.8401 -0.0004 28 1 5.1572 -2.3959 -0.5828 29 1 3.6228 -3.2824 -0.4156 30 1 4.7357 -3.7402 -2.8551 31 1 1.8716 -1.8900 -4.2626 32 1 2.1328 -2.6284 -5.8610 33 1 2.1372 -4.8880 -4.7626 34 1 1.7386 -4.0997 -3.2173 35 1 -0.2197 -4.8179 -4.3816 36 1 5.5595 -4.0176 -5.2360 37 1 4.2048 -3.8388 -6.4746 38 1 4.2466 -1.3218 -6.1580 39 1 5.6013 -1.4994 -4.9192 40 1 5.1191 0.3780 1.6005 41 1 5.7692 0.0761 3.9561 42 1 4.9232 -1.8543 5.2292 43 1 3.4198 -3.4780 4.1492 44 1 2.7703 -3.1766 1.7932 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349259011.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:39 Heat of formation + Delta-G solvation = -66.514730 kcal Electronic energy + Delta-G solvation = -25183.229132 eV Core-core repulsion = 21678.962736 eV Total energy + Delta-G solvation = -3504.266396 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.03607 -40.00020 -38.63122 -37.47201 -35.79640 -33.92171 -33.48636 -31.59673 -31.43599 -30.31600 -27.83019 -24.65236 -24.30564 -23.41648 -23.24748 -22.19842 -20.84248 -20.39089 -19.02437 -18.42032 -18.06104 -17.36895 -17.00715 -16.51760 -16.04542 -16.00907 -15.73803 -15.44217 -15.12240 -15.01540 -14.80417 -14.49697 -14.14898 -13.90332 -13.65537 -13.45824 -13.19053 -13.12998 -12.88995 -12.75464 -12.44216 -12.38447 -12.06022 -11.90639 -11.80696 -11.67512 -11.43638 -11.20620 -11.05281 -10.92389 -10.61772 -10.33253 -9.78706 -9.61515 -9.29537 -8.21962 -6.17340 0.69069 0.73967 1.28337 1.36675 1.38758 1.94729 2.27588 2.40565 2.79826 3.08799 3.21884 3.25852 3.85728 3.94839 3.99373 4.13701 4.15774 4.26423 4.31175 4.32157 4.36823 4.45960 4.48966 4.53547 4.64917 4.74522 4.79647 4.86767 4.88324 4.96463 5.00882 5.12097 5.20461 5.21506 5.24864 5.38951 5.41668 5.69016 5.77514 5.77647 5.83421 6.03607 6.33893 6.37132 6.81384 6.81661 6.85041 7.46309 7.63543 8.95200 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.013872 B = 0.004863 C = 0.004452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.032248 B = 5756.108198 C = 6287.129657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.023 3.977 3 Si 0.922 3.078 4 H -0.294 1.294 5 H -0.298 1.298 6 H -0.227 1.227 7 C -0.457 4.457 8 H 0.032 0.968 9 C 0.055 3.945 10 H 0.034 0.966 11 C -0.112 4.112 12 C 0.512 3.488 13 O -0.550 6.550 14 N -0.697 5.697 15 C 0.086 3.914 16 C -0.091 4.091 17 C 0.089 3.911 18 O -0.598 6.598 19 C -0.129 4.129 20 C -0.187 4.187 21 C -0.062 4.062 22 C -0.153 4.153 23 C -0.124 4.124 24 C -0.140 4.140 25 C -0.125 4.125 26 C -0.118 4.118 27 H 0.256 0.744 28 H 0.105 0.895 29 H 0.094 0.906 30 H 0.415 0.585 31 H 0.036 0.964 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.025 0.975 35 H 0.395 0.605 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.095 0.905 39 H 0.093 0.907 40 H 0.109 0.891 41 H 0.140 0.860 42 H 0.146 0.854 43 H 0.139 0.861 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.738 -11.862 -3.907 19.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.173 4.173 3 Si 0.749 3.251 4 H -0.221 1.221 5 H -0.225 1.225 6 H -0.150 1.150 7 C -0.495 4.495 8 H 0.051 0.949 9 C 0.036 3.964 10 H 0.052 0.948 11 C -0.152 4.152 12 C 0.299 3.701 13 O -0.425 6.425 14 N -0.352 5.352 15 C -0.002 4.002 16 C -0.129 4.129 17 C 0.012 3.988 18 O -0.406 6.406 19 C -0.166 4.166 20 C -0.226 4.226 21 C -0.063 4.063 22 C -0.171 4.171 23 C -0.142 4.142 24 C -0.158 4.158 25 C -0.143 4.143 26 C -0.136 4.136 27 H 0.065 0.935 28 H 0.123 0.877 29 H 0.112 0.888 30 H 0.252 0.748 31 H 0.055 0.945 32 H 0.103 0.897 33 H 0.097 0.903 34 H 0.043 0.957 35 H 0.245 0.755 36 H 0.142 0.858 37 H 0.140 0.860 38 H 0.114 0.886 39 H 0.112 0.888 40 H 0.127 0.873 41 H 0.158 0.842 42 H 0.164 0.836 43 H 0.156 0.844 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 14.311 -10.470 -4.369 18.263 hybrid contribution -0.614 0.501 0.207 0.820 sum 13.696 -9.969 -4.162 17.444 Atomic orbital electron populations 1.70038 1.08031 1.26967 1.54475 1.25594 0.95004 1.02104 0.94633 0.86133 0.81118 0.80616 0.77248 1.22071 1.22477 1.15017 1.20754 0.90178 0.92206 1.46387 0.94928 1.18056 0.94450 0.95226 0.88700 0.94823 1.21598 1.02325 1.01054 0.90248 1.21041 0.77896 0.82460 0.88694 1.90722 1.39787 1.29673 1.82367 1.45284 1.55418 1.29199 1.05293 1.20393 0.90750 1.08403 0.80607 1.21123 0.92698 0.97539 1.01567 1.22008 0.81295 0.97781 0.97707 1.86435 1.23120 1.48231 1.82851 1.23473 1.00617 0.94314 0.98235 1.23391 1.01655 0.95125 1.02426 1.20492 0.93830 0.94287 0.97684 1.21253 0.99934 0.99456 0.96507 1.21333 1.00515 0.98678 0.93667 1.21334 0.98799 0.94961 1.00709 1.21392 0.98305 1.00241 0.94377 1.20998 0.99306 0.98264 0.95072 0.93479 0.87723 0.88797 0.74782 0.94526 0.89661 0.90316 0.95660 0.75500 0.85750 0.86026 0.88628 0.88814 0.87322 0.84241 0.83599 0.84365 0.87383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -63.74 13.96 21.45 0.30 -63.44 16 2 C 0.02 1.40 5.47 84.66 0.46 1.86 16 3 Si 0.92 49.46 27.29 68.60 1.87 51.33 16 4 H -0.29 -16.44 7.11 99.48 0.71 -15.73 16 5 H -0.30 -15.84 7.11 99.48 0.71 -15.13 16 6 H -0.23 -10.83 4.88 99.48 0.49 -10.35 16 7 C -0.46 -26.20 6.81 25.60 0.17 -26.03 16 8 H 0.03 2.06 8.06 -2.91 -0.02 2.03 16 9 C 0.06 2.52 1.25 -12.28 -0.02 2.51 16 10 H 0.03 1.65 4.64 -2.39 -0.01 1.64 16 11 C -0.11 -4.04 4.98 29.85 0.15 -3.90 16 12 C 0.51 19.80 7.38 87.66 0.65 20.44 16 13 O -0.55 -27.95 13.53 -3.01 -0.04 -27.99 16 14 N -0.70 -19.16 5.17 -422.94 -2.19 -21.35 16 15 C 0.09 2.27 1.82 3.60 0.01 2.28 16 16 C -0.09 -2.96 5.27 30.59 0.16 -2.80 16 17 C 0.09 2.61 6.89 71.99 0.50 3.11 16 18 O -0.60 -18.81 13.66 -148.98 -2.03 -20.85 16 19 C -0.13 -2.08 10.16 30.61 0.31 -1.77 16 20 C -0.19 -4.41 10.17 30.61 0.31 -4.10 16 21 C -0.06 -2.55 4.77 -19.86 -0.09 -2.65 16 22 C -0.15 -5.68 9.17 22.27 0.20 -5.47 16 23 C -0.12 -3.75 10.05 22.27 0.22 -3.53 16 24 C -0.14 -3.90 10.05 22.27 0.22 -3.68 16 25 C -0.13 -3.85 10.05 22.27 0.22 -3.62 16 26 C -0.12 -4.45 8.88 22.27 0.20 -4.26 16 27 H 0.26 16.44 8.31 -92.71 -0.77 15.67 16 28 H 0.10 2.97 8.14 -2.39 -0.02 2.95 16 29 H 0.09 3.16 7.89 -2.39 -0.02 3.15 16 30 H 0.41 7.86 8.83 -92.71 -0.82 7.04 16 31 H 0.04 1.64 6.74 -2.39 -0.02 1.62 16 32 H 0.08 2.47 8.11 -2.39 -0.02 2.45 16 33 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.03 0.84 8.03 -2.39 -0.02 0.82 16 35 H 0.40 8.33 9.12 -74.05 -0.68 7.65 16 36 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.12 1.55 8.14 -2.38 -0.02 1.53 16 38 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.09 2.25 8.14 -2.38 -0.02 2.23 16 40 H 0.11 3.99 7.01 -2.91 -0.02 3.97 16 41 H 0.14 3.31 8.06 -2.91 -0.02 3.28 16 42 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 43 H 0.14 3.40 8.06 -2.91 -0.02 3.38 16 44 H 0.11 4.20 7.81 -2.91 -0.02 4.17 16 Total: -1.00 -84.19 363.45 0.89 -83.30 By element: Atomic # 1 Polarization: 31.28 SS G_CDS: -0.70 Total: 30.58 kcal Atomic # 6 Polarization: -35.26 SS G_CDS: 3.68 Total: -31.58 kcal Atomic # 7 Polarization: -82.90 SS G_CDS: -1.89 Total: -84.79 kcal Atomic # 8 Polarization: -46.76 SS G_CDS: -2.08 Total: -48.84 kcal Atomic # 14 Polarization: 49.46 SS G_CDS: 1.87 Total: 51.33 kcal Total: -84.19 0.89 -83.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349259011.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.786 kcal (2) G-P(sol) polarization free energy of solvation -84.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds