Wall clock time and date at job start Tue Mar 31 2020 08:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86791 * 120.00091 * 2 1 4 4 H 1.48498 * 109.47249 * 239.99926 * 3 2 1 5 5 H 1.48507 * 109.46823 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47282 * 119.99592 * 3 2 1 7 7 C 1.37877 * 119.99739 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99679 * 186.12045 * 7 2 1 9 9 C 1.50703 * 120.00372 * 6.11908 * 7 2 1 10 10 H 1.09000 * 109.47168 * 25.84665 * 9 7 2 11 11 C 1.52997 * 109.47178 * 145.85018 * 9 7 2 12 12 C 1.50699 * 109.46710 * 294.99910 * 11 9 7 13 13 O 1.21282 * 120.00614 * 0.02562 * 12 11 9 14 14 N 1.34784 * 119.99644 * 180.02562 * 12 11 9 15 15 C 1.46497 * 119.99946 * 180.02562 * 14 12 11 16 16 C 1.52993 * 109.47179 * 180.02562 * 15 14 12 17 17 H 1.09003 * 109.82468 * 305.69550 * 16 15 14 18 18 C 1.54388 * 109.83280 * 184.81305 * 16 15 14 19 19 C 1.55447 * 102.18506 * 219.18007 * 18 16 15 20 20 C 1.54943 * 100.99286 * 34.04025 * 19 18 16 21 21 O 1.43240 * 109.83372 * 66.58432 * 16 15 14 22 22 C 1.50702 * 109.47157 * 265.85010 * 9 7 2 23 23 C 1.38238 * 119.99644 * 303.46594 * 22 9 7 24 24 C 1.38241 * 119.99826 * 179.78640 * 23 22 9 25 25 C 1.38236 * 119.99849 * 0.46363 * 24 23 22 26 26 C 1.38238 * 120.00105 * 359.76488 * 25 24 23 27 27 C 1.38230 * 120.00366 * 123.73344 * 22 9 7 28 28 H 0.96999 * 120.00152 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47015 * 54.99765 * 11 9 7 30 30 H 1.08999 * 109.47193 * 175.00033 * 11 9 7 31 31 H 0.97003 * 119.99958 * 359.97438 * 14 12 11 32 32 H 1.09007 * 109.46931 * 299.99653 * 15 14 12 33 33 H 1.08999 * 109.47202 * 59.99876 * 15 14 12 34 34 H 1.08997 * 110.84562 * 337.31459 * 18 16 15 35 35 H 1.09001 * 110.84709 * 100.93935 * 18 16 15 36 36 H 1.09004 * 111.05852 * 276.12169 * 19 18 16 37 37 H 1.09000 * 111.18377 * 152.00620 * 19 18 16 38 38 H 1.09000 * 110.31230 * 204.69113 * 20 19 18 39 39 H 1.08993 * 110.31326 * 82.51447 * 20 19 18 40 40 H 1.07992 * 120.00498 * 359.97438 * 23 22 9 41 41 H 1.07992 * 120.00105 * 180.24730 * 24 23 22 42 42 H 1.08000 * 120.00138 * 179.78944 * 25 24 23 43 43 H 1.07993 * 120.00139 * 180.02562 * 26 25 24 44 44 H 1.08004 * 119.99519 * 359.97438 * 27 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0799 -1.1968 0.0992 9 6 1.2575 -2.4954 -0.1402 10 1 0.3200 -2.3214 -0.6685 11 6 2.1103 -3.4909 -0.9293 12 6 2.2984 -2.9861 -2.3367 13 8 1.7999 -1.9336 -2.6752 14 7 3.0207 -3.7044 -3.2193 15 6 3.2041 -3.2135 -4.5873 16 6 4.0557 -4.2096 -5.3767 17 1 4.9896 -4.3986 -4.8473 18 6 4.3555 -3.6442 -6.7818 19 6 4.2363 -4.9095 -7.6769 20 6 3.1134 -5.6855 -6.9435 21 8 3.3364 -5.4366 -5.5464 22 6 0.9664 -3.0569 1.2277 23 6 2.0019 -3.2923 2.1128 24 6 1.7345 -3.8033 3.3692 25 6 0.4327 -4.0878 3.7369 26 6 -0.6023 -3.8568 2.8501 27 6 -0.3353 -3.3418 1.5953 28 1 -0.4850 0.8400 -0.0004 29 1 3.0826 -3.5974 -0.4484 30 1 1.6094 -4.4587 -0.9543 31 1 3.4197 -4.5461 -2.9484 32 1 2.2317 -3.1062 -5.0682 33 1 3.7057 -2.2461 -4.5620 34 1 3.6142 -2.8973 -7.0656 35 1 5.3626 -3.2295 -6.8262 36 1 5.1675 -5.4760 -7.6804 37 1 3.9348 -4.6476 -8.6911 38 1 3.1904 -6.7521 -7.1547 39 1 2.1354 -5.3092 -7.2433 40 1 3.0193 -3.0743 1.8239 41 1 2.5430 -3.9834 4.0621 42 1 0.2241 -4.4901 4.7172 43 1 -1.6194 -4.0787 3.1375 44 1 -1.1438 -3.1615 0.9023 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353341392.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:10:12 Heat of formation + Delta-G solvation = -68.438561 kcal Electronic energy + Delta-G solvation = -24438.813457 eV Core-core repulsion = 20934.463638 eV Total energy + Delta-G solvation = -3504.349820 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.81383 -38.78484 -38.02697 -34.41831 -33.69304 -32.36983 -31.42578 -30.27619 -29.94874 -28.63329 -26.05872 -24.75876 -22.68566 -21.97873 -21.56504 -21.21327 -20.00176 -19.08960 -17.17085 -16.66717 -16.31681 -15.97364 -15.71495 -15.31503 -14.68848 -14.42364 -14.17744 -14.05898 -13.81243 -13.58373 -13.25335 -12.70772 -12.59238 -12.37576 -12.20681 -11.99360 -11.90213 -11.62243 -11.58043 -11.41874 -11.36323 -11.07829 -10.80091 -10.62104 -10.54200 -10.20506 -9.99698 -9.67987 -9.38453 -9.00152 -8.78483 -8.43958 -8.26321 -7.98928 -7.54610 -5.87587 -3.86696 2.34424 2.40479 3.42253 3.45857 3.49822 3.50956 3.67298 3.92337 4.22878 4.55645 4.56904 4.63834 4.81154 4.92350 5.00110 5.21945 5.41409 5.46524 5.47249 5.50005 5.55832 5.70942 5.74598 5.76951 5.78574 5.89244 5.96939 6.13294 6.18815 6.29419 6.35917 6.46792 6.60435 6.81402 6.87999 6.97517 7.06288 7.10890 7.36333 7.51001 7.59605 7.91452 8.00971 8.11566 8.23465 8.45323 9.12692 9.20934 9.74753 11.22760 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.013712 B = 0.003850 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.446965 B = 7270.194060 C = 8709.411461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.078 3.922 3 Si 0.886 3.114 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.491 4.491 8 H 0.049 0.951 9 C 0.080 3.920 10 H 0.071 0.929 11 C -0.122 4.122 12 C 0.512 3.488 13 O -0.499 6.499 14 N -0.745 5.745 15 C 0.114 3.886 16 C 0.069 3.931 17 H 0.086 0.914 18 C -0.149 4.149 19 C -0.156 4.156 20 C 0.049 3.951 21 O -0.374 6.374 22 C -0.020 4.020 23 C -0.115 4.115 24 C -0.132 4.132 25 C -0.156 4.156 26 C -0.128 4.128 27 C -0.119 4.119 28 H 0.259 0.741 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.395 0.605 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.060 0.940 40 H 0.113 0.887 41 H 0.105 0.895 42 H 0.103 0.897 43 H 0.105 0.895 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.419 -11.894 -9.743 17.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.125 4.125 3 Si 0.715 3.285 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.206 1.206 7 C -0.528 4.528 8 H 0.067 0.933 9 C 0.061 3.939 10 H 0.090 0.910 11 C -0.162 4.162 12 C 0.298 3.702 13 O -0.371 6.371 14 N -0.401 5.401 15 C -0.010 4.010 16 C 0.011 3.989 17 H 0.104 0.896 18 C -0.187 4.187 19 C -0.194 4.194 20 C -0.027 4.027 21 O -0.294 6.294 22 C -0.020 4.020 23 C -0.134 4.134 24 C -0.150 4.150 25 C -0.175 4.175 26 C -0.146 4.146 27 C -0.137 4.137 28 H 0.069 0.931 29 H 0.094 0.906 30 H 0.083 0.917 31 H 0.228 0.772 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.078 0.922 40 H 0.131 0.869 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.123 0.877 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 6.786 -11.070 -9.821 16.280 hybrid contribution 0.746 0.836 0.021 1.121 sum 7.532 -10.234 -9.800 16.047 Atomic orbital electron populations 1.69906 1.05930 1.26438 1.49644 1.24802 0.94643 0.98782 0.94228 0.86763 0.79776 0.83732 0.78269 1.20354 1.21468 1.20551 1.20642 0.92342 0.89651 1.50200 0.93253 1.17832 0.97579 0.91418 0.87086 0.91034 1.21780 1.02239 0.99932 0.92275 1.20901 0.77623 0.84362 0.87272 1.90749 1.46252 1.21527 1.78559 1.46093 1.56997 1.25900 1.11109 1.21572 0.99885 0.96272 0.83289 1.23031 0.94886 0.84810 0.96130 0.89638 1.23141 1.03487 0.98399 0.93658 1.23288 0.99792 0.96485 0.99814 1.23379 0.97776 1.00286 0.81281 1.88476 1.76770 1.39957 1.24150 1.20746 0.91941 0.90286 0.99069 1.20947 0.99402 0.99568 0.93442 1.20970 0.96056 1.01303 0.96686 1.20786 0.93355 1.04335 0.98978 1.20979 0.97951 1.01011 0.94700 1.21091 0.97107 0.99343 0.96171 0.93142 0.90614 0.91669 0.77200 0.91736 0.91049 0.89891 0.89668 0.90400 0.89893 0.89806 0.92158 0.86923 0.87707 0.87849 0.87673 0.86852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.39 12.87 55.43 0.71 -25.68 16 2 C 0.08 2.26 5.45 -17.82 -0.10 2.16 16 3 Si 0.89 22.57 29.54 -169.99 -5.02 17.55 16 4 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 7 C -0.49 -13.44 6.37 -34.44 -0.22 -13.66 16 8 H 0.05 1.34 7.82 -52.48 -0.41 0.93 16 9 C 0.08 1.96 1.67 -92.92 -0.16 1.80 16 10 H 0.07 2.02 6.98 -51.93 -0.36 1.65 16 11 C -0.12 -2.45 4.95 -27.88 -0.14 -2.59 16 12 C 0.51 10.65 7.58 -10.98 -0.08 10.57 16 13 O -0.50 -12.89 14.98 5.56 0.08 -12.81 16 14 N -0.75 -11.94 5.53 -60.30 -0.33 -12.28 16 15 C 0.11 1.63 5.21 -4.05 -0.02 1.61 16 16 C 0.07 0.75 3.55 -26.01 -0.09 0.65 16 17 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 18 C -0.15 -1.23 6.56 -24.70 -0.16 -1.39 16 19 C -0.16 -1.09 7.16 -24.41 -0.17 -1.27 16 20 C 0.05 0.43 7.78 38.18 0.30 0.73 16 21 O -0.37 -4.46 10.99 -35.23 -0.39 -4.85 16 22 C -0.02 -0.45 4.77 -104.62 -0.50 -0.95 16 23 C -0.12 -2.39 8.86 -39.58 -0.35 -2.74 16 24 C -0.13 -2.43 10.05 -39.58 -0.40 -2.83 16 25 C -0.16 -2.79 10.05 -39.58 -0.40 -3.19 16 26 C -0.13 -2.43 10.05 -39.58 -0.40 -2.83 16 27 C -0.12 -2.58 9.67 -39.58 -0.38 -2.96 16 28 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 29 H 0.08 1.40 7.77 -51.93 -0.40 0.99 16 30 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.39 5.30 8.47 -40.82 -0.35 4.95 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.08 0.70 7.85 -51.93 -0.41 0.29 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.11 2.24 7.76 -52.49 -0.41 1.84 16 41 H 0.10 1.63 8.06 -52.49 -0.42 1.20 16 42 H 0.10 1.54 8.06 -52.49 -0.42 1.12 16 43 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 44 H 0.11 2.48 7.95 -52.48 -0.42 2.07 16 LS Contribution 365.32 15.07 5.51 5.51 Total: -1.00 -33.48 365.32 -9.68 -43.16 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -6.96 Total: 6.28 kcal Atomic # 6 Polarization: -13.61 SS G_CDS: -3.27 Total: -16.88 kcal Atomic # 7 Polarization: -38.34 SS G_CDS: 0.38 Total: -37.96 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: -0.30 Total: -17.65 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.48 -9.68 -43.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353341392.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.283 kcal (2) G-P(sol) polarization free energy of solvation -33.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds