Wall clock time and date at job start Tue Mar 31 2020 08:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30645 * 1 3 3 Si 1.86800 * 120.00149 * 2 1 4 4 H 1.48506 * 109.46953 * 274.95843 * 3 2 1 5 5 H 1.48496 * 109.47036 * 34.95482 * 3 2 1 6 6 H 1.48492 * 109.47186 * 154.96022 * 3 2 1 7 7 C 1.40228 * 120.00162 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00138 * 161.93965 * 7 2 1 9 9 C 1.41112 * 119.99859 * 341.94562 * 7 2 1 10 10 C 1.40884 * 120.10305 * 154.71508 * 9 7 2 11 11 C 1.36315 * 119.89408 * 180.02562 * 10 9 7 12 12 C 1.40021 * 120.10450 * 0.02562 * 11 10 9 13 13 C 1.47637 * 119.89542 * 179.97438 * 12 11 10 14 14 O 1.21588 * 120.00010 * 359.97438 * 13 12 11 15 15 N 1.34775 * 120.00111 * 180.02562 * 13 12 11 16 16 C 1.46497 * 119.99957 * 179.97438 * 15 13 12 17 17 C 1.53004 * 109.46914 * 185.07909 * 16 15 13 18 18 C 1.52993 * 110.01792 * 61.01232 * 17 16 15 19 19 O 1.42903 * 109.47148 * 61.97414 * 18 17 16 20 20 C 1.54269 * 110.03174 * 182.40694 * 17 16 15 21 21 C 1.54958 * 104.16200 * 95.75481 * 20 17 16 22 22 C 1.54885 * 102.77990 * 37.88566 * 21 20 17 23 23 C 1.53881 * 110.03284 * 299.62167 * 17 16 15 24 24 C 1.40009 * 120.20715 * 0.25434 * 12 11 10 25 25 C 1.36317 * 120.10734 * 359.47964 * 24 12 11 26 26 H 0.96991 * 120.00136 * 0.02562 * 1 2 3 27 27 H 1.08003 * 120.05557 * 0.02562 * 10 9 7 28 28 H 1.07994 * 119.94938 * 179.97438 * 11 10 9 29 29 H 0.97005 * 119.99897 * 359.97438 * 15 13 12 30 30 H 1.09001 * 109.47590 * 65.08248 * 16 15 13 31 31 H 1.09000 * 109.47544 * 305.07515 * 16 15 13 32 32 H 1.09001 * 109.47468 * 301.97315 * 18 17 16 33 33 H 1.09002 * 109.47280 * 181.97384 * 18 17 16 34 34 H 0.96705 * 114.00154 * 180.02562 * 19 18 17 35 35 H 1.09004 * 110.48426 * 214.39993 * 20 17 16 36 36 H 1.08996 * 110.48552 * 337.04005 * 20 17 16 37 37 H 1.09006 * 110.72115 * 279.57102 * 21 20 17 38 38 H 1.09000 * 110.92458 * 156.29558 * 21 20 17 39 39 H 1.08995 * 110.49402 * 203.40615 * 22 21 20 40 40 H 1.09005 * 110.48843 * 80.76353 * 22 21 20 41 41 H 1.08997 * 110.03049 * 359.95226 * 23 17 16 42 42 H 1.09002 * 110.03140 * 121.38397 * 23 17 16 43 43 H 1.08005 * 119.94739 * 179.74750 * 24 12 11 44 44 H 1.08002 * 120.05437 * 180.22936 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 2.3832 2.1069 -1.3949 5 1 1.4943 2.6201 0.8021 6 1 3.5865 1.4121 0.5925 7 6 2.0076 -1.2144 0.0005 8 1 3.0477 -1.2376 -0.2894 9 6 1.3542 -2.4062 0.3798 10 6 1.8182 -3.6486 -0.0957 11 6 1.1834 -4.7972 0.2730 12 6 0.0716 -4.7436 1.1225 13 6 -0.6128 -5.9904 1.5184 14 8 -0.2110 -7.0615 1.1065 15 7 -1.6835 -5.9412 2.3355 16 6 -2.3628 -7.1784 2.7279 17 6 -3.6096 -6.8379 3.5468 18 6 -4.5767 -6.0026 2.7055 19 8 -4.9993 -6.7619 1.5711 20 6 -4.3023 -8.1332 4.0181 21 6 -3.7553 -8.3560 5.4507 22 6 -3.6767 -6.9159 6.0152 23 6 -3.2116 -6.0642 4.8160 24 6 -0.3967 -3.5108 1.5929 25 6 0.2348 -2.3573 1.2340 26 1 -0.4850 0.8400 -0.0004 27 1 2.6754 -3.6909 -0.7513 28 1 1.5380 -5.7499 -0.0913 29 1 -2.0042 -5.0866 2.6638 30 1 -1.6886 -7.7883 3.3292 31 1 -2.6545 -7.7317 1.8352 32 1 -4.0751 -5.0952 2.3690 33 1 -5.4450 -5.7356 3.3080 34 1 -5.6153 -6.2933 0.9913 35 1 -5.3841 -8.0013 4.0392 36 1 -4.0314 -8.9677 3.3713 37 1 -2.7662 -8.8131 5.4191 38 1 -4.4418 -8.9647 6.0392 39 1 -2.9497 -6.8628 6.8255 40 1 -4.6573 -6.5869 6.3592 41 1 -2.1302 -5.9321 4.8489 42 1 -3.7075 -5.0937 4.8325 43 1 -1.2572 -3.4741 2.2446 44 1 -0.1249 -1.4072 1.6003 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354238721.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:58 Heat of formation + Delta-G solvation = -93.427993 kcal Electronic energy + Delta-G solvation = -24581.937870 eV Core-core repulsion = 21076.504427 eV Total energy + Delta-G solvation = -3505.433443 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.91670 -38.54981 -37.00058 -36.15457 -33.93884 -33.85475 -30.80703 -29.78835 -29.42904 -28.92004 -26.55972 -25.24926 -23.97458 -21.82687 -20.94894 -20.91035 -19.46162 -18.87481 -17.52662 -17.36120 -16.89173 -15.96694 -15.50256 -15.32953 -14.88366 -14.62601 -14.30976 -14.00738 -13.71654 -13.50783 -13.15725 -13.10737 -12.69717 -12.64319 -12.10553 -12.06295 -11.89619 -11.37784 -11.29934 -11.26842 -11.18727 -11.02637 -11.01683 -10.90765 -10.68894 -10.61375 -10.50160 -10.05601 -9.98829 -9.55626 -9.34620 -8.91375 -8.48104 -7.71598 -7.52858 -7.03804 -4.59637 2.25454 2.90338 2.94180 3.00695 3.03688 3.73915 3.78961 3.91042 4.16604 4.42794 4.43898 4.58838 4.72428 5.01265 5.17384 5.18618 5.29331 5.37886 5.45694 5.54692 5.57482 5.67234 5.73293 5.81992 5.86711 5.92857 6.02971 6.04942 6.13208 6.18810 6.20503 6.33116 6.35088 6.77007 6.83099 6.98409 7.09714 7.13834 7.44145 7.56901 7.66425 7.79670 7.86317 8.07692 8.29516 8.39989 8.63480 8.75714 9.14377 9.88752 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.020878 B = 0.003158 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.809468 B = 8862.888872 C = 9319.178890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.773 5.773 2 C 0.075 3.925 3 Si 0.912 3.088 4 H -0.268 1.268 5 H -0.273 1.273 6 H -0.257 1.257 7 C -0.444 4.444 8 H 0.085 0.915 9 C 0.129 3.871 10 C -0.238 4.238 11 C -0.022 4.022 12 C -0.282 4.282 13 C 0.571 3.429 14 O -0.576 6.576 15 N -0.739 5.739 16 C 0.141 3.859 17 C -0.072 4.072 18 C 0.087 3.913 19 O -0.566 6.566 20 C -0.101 4.101 21 C -0.128 4.128 22 C -0.122 4.122 23 C -0.122 4.122 24 C -0.063 4.063 25 C -0.178 4.178 26 H 0.286 0.714 27 H 0.098 0.902 28 H 0.101 0.899 29 H 0.394 0.606 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.047 0.953 33 H 0.045 0.955 34 H 0.378 0.622 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.076 0.924 42 H 0.067 0.933 43 H 0.086 0.914 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.399 -5.512 9.255 14.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.146 4.146 3 Si 0.735 3.265 4 H -0.193 1.193 5 H -0.198 1.198 6 H -0.181 1.181 7 C -0.472 4.472 8 H 0.103 0.897 9 C 0.126 3.874 10 C -0.258 4.258 11 C -0.042 4.042 12 C -0.287 4.287 13 C 0.365 3.635 14 O -0.458 6.458 15 N -0.392 5.392 16 C 0.017 3.983 17 C -0.073 4.073 18 C 0.009 3.991 19 O -0.371 6.371 20 C -0.139 4.139 21 C -0.166 4.166 22 C -0.159 4.159 23 C -0.159 4.159 24 C -0.082 4.082 25 C -0.197 4.197 26 H 0.097 0.903 27 H 0.116 0.884 28 H 0.119 0.881 29 H 0.229 0.771 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.224 0.776 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.095 0.905 42 H 0.086 0.914 43 H 0.104 0.896 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -9.939 -6.564 9.226 15.066 hybrid contribution -0.333 1.760 -0.154 1.797 sum -10.271 -4.804 9.072 14.522 Atomic orbital electron populations 1.69744 1.07916 1.29969 1.32014 1.26086 0.94790 1.01838 0.91870 0.86226 0.80881 0.79994 0.79359 1.19262 1.19761 1.18089 1.19831 0.98497 0.91235 1.37662 0.89741 1.17773 0.90290 0.92160 0.87186 1.20725 1.04774 0.92687 1.07587 1.20371 0.92985 0.97156 0.93649 1.18932 1.04643 0.91110 1.13981 1.18559 0.78693 0.89547 0.76670 1.90631 1.66569 1.31735 1.56829 1.45908 1.32390 1.08996 1.51941 1.21189 0.91342 0.87387 0.98407 1.21493 0.94808 0.96418 0.94548 1.22277 0.96164 0.93461 0.87163 1.86486 1.67505 1.44781 1.38360 1.22275 0.99609 0.96315 0.95734 1.22564 1.01265 0.96689 0.96072 1.22326 1.01053 0.95172 0.97359 1.22280 1.02154 0.98526 0.92968 1.20441 0.97278 0.92629 0.97858 1.20943 1.00024 0.96825 1.01921 0.90307 0.88392 0.88111 0.77097 0.92443 0.91057 0.93430 0.93705 0.77591 0.91274 0.91086 0.91350 0.91639 0.91576 0.91758 0.90515 0.91423 0.89572 0.86357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.45 11.00 55.56 0.61 -17.84 16 2 C 0.08 1.75 5.13 -17.31 -0.09 1.66 16 3 Si 0.91 17.21 29.60 -169.99 -5.03 12.18 16 4 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 5 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 6 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 7 C -0.44 -11.08 9.04 -37.74 -0.34 -11.42 16 8 H 0.08 2.01 7.91 -52.49 -0.42 1.60 16 9 C 0.13 3.30 5.57 -106.80 -0.59 2.70 16 10 C -0.24 -5.82 9.73 -39.27 -0.38 -6.21 16 11 C -0.02 -0.54 9.52 -39.61 -0.38 -0.91 16 12 C -0.28 -6.55 5.89 -104.73 -0.62 -7.16 16 13 C 0.57 12.51 7.76 -12.42 -0.10 12.42 16 14 O -0.58 -14.25 16.32 5.29 0.09 -14.16 16 15 N -0.74 -12.72 4.70 -61.31 -0.29 -13.01 16 16 C 0.14 2.14 4.14 -4.04 -0.02 2.12 16 17 C -0.07 -0.82 0.48 -153.39 -0.07 -0.90 16 18 C 0.09 0.95 5.41 37.15 0.20 1.16 16 19 O -0.57 -6.68 12.74 -35.23 -0.45 -7.13 16 20 C -0.10 -1.04 5.58 -25.03 -0.14 -1.18 16 21 C -0.13 -1.15 6.91 -24.70 -0.17 -1.32 16 22 C -0.12 -1.06 6.83 -25.07 -0.17 -1.23 16 23 C -0.12 -1.24 5.48 -25.61 -0.14 -1.38 16 24 C -0.06 -1.40 9.47 -39.61 -0.38 -1.77 16 25 C -0.18 -4.35 8.63 -39.27 -0.34 -4.69 16 26 H 0.29 6.12 8.29 -40.82 -0.34 5.78 16 27 H 0.10 2.23 8.06 -52.48 -0.42 1.81 16 28 H 0.10 2.35 7.63 -52.49 -0.40 1.95 16 29 H 0.39 6.07 5.08 -40.82 -0.21 5.86 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.07 1.24 7.74 -51.93 -0.40 0.84 16 32 H 0.05 0.55 7.03 -51.93 -0.36 0.19 16 33 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.38 2.93 9.12 45.56 0.42 3.35 16 35 H 0.07 0.67 7.85 -51.93 -0.41 0.26 16 36 H 0.07 0.79 7.84 -51.93 -0.41 0.38 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.08 0.88 7.36 -51.93 -0.38 0.50 16 42 H 0.07 0.62 7.67 -51.93 -0.40 0.22 16 43 H 0.09 1.62 6.37 -52.48 -0.33 1.29 16 44 H 0.12 2.92 6.21 -52.49 -0.33 2.59 16 LS Contribution 354.25 15.07 5.34 5.34 Total: -1.00 -29.64 354.25 -9.18 -38.82 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: -5.72 Total: 13.92 kcal Atomic # 6 Polarization: -14.39 SS G_CDS: -3.72 Total: -18.11 kcal Atomic # 7 Polarization: -31.18 SS G_CDS: 0.32 Total: -30.85 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: -0.36 Total: -21.29 kcal Atomic # 14 Polarization: 17.21 SS G_CDS: -5.03 Total: 12.18 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.64 -9.18 -38.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354238721.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.611 kcal (2) G-P(sol) polarization free energy of solvation -29.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds