Wall clock time and date at job start Tue Mar 31 2020 08:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30645 * 1 3 3 Si 1.86800 * 120.00149 * 2 1 4 4 H 1.48506 * 109.46953 * 274.95843 * 3 2 1 5 5 H 1.48496 * 109.47036 * 34.95482 * 3 2 1 6 6 H 1.48492 * 109.47186 * 154.96022 * 3 2 1 7 7 C 1.40228 * 120.00162 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00138 * 161.93965 * 7 2 1 9 9 C 1.41112 * 119.99859 * 341.94562 * 7 2 1 10 10 C 1.40884 * 120.10305 * 154.71508 * 9 7 2 11 11 C 1.36315 * 119.89408 * 180.02562 * 10 9 7 12 12 C 1.40021 * 120.10450 * 0.02562 * 11 10 9 13 13 C 1.47637 * 119.89542 * 179.97438 * 12 11 10 14 14 O 1.21588 * 120.00010 * 359.97438 * 13 12 11 15 15 N 1.34775 * 120.00111 * 180.02562 * 13 12 11 16 16 C 1.46497 * 119.99957 * 179.97438 * 15 13 12 17 17 C 1.53004 * 109.46914 * 185.07909 * 16 15 13 18 18 C 1.52993 * 110.01792 * 61.01232 * 17 16 15 19 19 O 1.42903 * 109.47148 * 61.97414 * 18 17 16 20 20 C 1.54269 * 110.03174 * 182.40694 * 17 16 15 21 21 C 1.54958 * 104.16200 * 95.75481 * 20 17 16 22 22 C 1.54885 * 102.77990 * 37.88566 * 21 20 17 23 23 C 1.53881 * 110.03284 * 299.62167 * 17 16 15 24 24 C 1.40009 * 120.20715 * 0.25434 * 12 11 10 25 25 C 1.36317 * 120.10734 * 359.47964 * 24 12 11 26 26 H 0.96991 * 120.00136 * 0.02562 * 1 2 3 27 27 H 1.08003 * 120.05557 * 0.02562 * 10 9 7 28 28 H 1.07994 * 119.94938 * 179.97438 * 11 10 9 29 29 H 0.97005 * 119.99897 * 359.97438 * 15 13 12 30 30 H 1.09001 * 109.47590 * 65.08248 * 16 15 13 31 31 H 1.09000 * 109.47544 * 305.07515 * 16 15 13 32 32 H 1.09001 * 109.47468 * 301.97315 * 18 17 16 33 33 H 1.09002 * 109.47280 * 181.97384 * 18 17 16 34 34 H 0.96705 * 114.00154 * 180.02562 * 19 18 17 35 35 H 1.09004 * 110.48426 * 214.39993 * 20 17 16 36 36 H 1.08996 * 110.48552 * 337.04005 * 20 17 16 37 37 H 1.09006 * 110.72115 * 279.57102 * 21 20 17 38 38 H 1.09000 * 110.92458 * 156.29558 * 21 20 17 39 39 H 1.08995 * 110.49402 * 203.40615 * 22 21 20 40 40 H 1.09005 * 110.48843 * 80.76353 * 22 21 20 41 41 H 1.08997 * 110.03049 * 359.95226 * 23 17 16 42 42 H 1.09002 * 110.03140 * 121.38397 * 23 17 16 43 43 H 1.08005 * 119.94739 * 179.74750 * 24 12 11 44 44 H 1.08002 * 120.05437 * 180.22936 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 2.3832 2.1069 -1.3949 5 1 1.4943 2.6201 0.8021 6 1 3.5865 1.4121 0.5925 7 6 2.0076 -1.2144 0.0005 8 1 3.0477 -1.2376 -0.2894 9 6 1.3542 -2.4062 0.3798 10 6 1.8182 -3.6486 -0.0957 11 6 1.1834 -4.7972 0.2730 12 6 0.0716 -4.7436 1.1225 13 6 -0.6128 -5.9904 1.5184 14 8 -0.2110 -7.0615 1.1065 15 7 -1.6835 -5.9412 2.3355 16 6 -2.3628 -7.1784 2.7279 17 6 -3.6096 -6.8379 3.5468 18 6 -4.5767 -6.0026 2.7055 19 8 -4.9993 -6.7619 1.5711 20 6 -4.3023 -8.1332 4.0181 21 6 -3.7553 -8.3560 5.4507 22 6 -3.6767 -6.9159 6.0152 23 6 -3.2116 -6.0642 4.8160 24 6 -0.3967 -3.5108 1.5929 25 6 0.2348 -2.3573 1.2340 26 1 -0.4850 0.8400 -0.0004 27 1 2.6754 -3.6909 -0.7513 28 1 1.5380 -5.7499 -0.0913 29 1 -2.0042 -5.0866 2.6638 30 1 -1.6886 -7.7883 3.3292 31 1 -2.6545 -7.7317 1.8352 32 1 -4.0751 -5.0952 2.3690 33 1 -5.4450 -5.7356 3.3080 34 1 -5.6153 -6.2933 0.9913 35 1 -5.3841 -8.0013 4.0392 36 1 -4.0314 -8.9677 3.3713 37 1 -2.7662 -8.8131 5.4191 38 1 -4.4418 -8.9647 6.0392 39 1 -2.9497 -6.8628 6.8255 40 1 -4.6573 -6.5869 6.3592 41 1 -2.1302 -5.9321 4.8489 42 1 -3.7075 -5.0937 4.8325 43 1 -1.2572 -3.4741 2.2446 44 1 -0.1249 -1.4072 1.6003 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354238721.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:57 Heat of formation + Delta-G solvation = -111.712818 kcal Electronic energy + Delta-G solvation = -24582.730760 eV Core-core repulsion = 21076.504427 eV Total energy + Delta-G solvation = -3506.226332 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.17257 -39.99670 -38.78276 -36.99956 -35.67254 -35.39808 -32.32698 -31.33697 -31.07127 -29.70299 -28.12726 -26.63051 -24.96230 -23.52917 -22.76982 -21.84396 -21.01850 -19.90537 -19.36757 -18.46185 -18.17808 -17.32244 -17.00515 -16.51097 -16.21601 -15.77776 -15.71579 -15.39518 -15.17160 -15.03606 -14.47370 -14.42653 -14.02468 -13.88085 -13.83328 -13.65058 -13.23301 -12.97276 -12.84583 -12.64890 -12.36731 -12.04751 -12.01278 -11.86757 -11.81660 -11.77873 -11.43894 -11.40575 -11.36842 -11.11807 -10.85872 -10.69964 -10.04043 -9.58499 -9.40490 -8.80030 -6.48417 0.43610 1.13833 1.38925 1.42682 1.55360 2.11979 2.18566 2.38480 2.78391 3.28525 3.54096 3.60232 3.68523 3.91310 4.18927 4.23139 4.28875 4.34691 4.37120 4.43192 4.46511 4.58275 4.62809 4.73997 4.79690 4.90786 4.92287 4.97487 5.03223 5.05739 5.09550 5.14703 5.22805 5.28784 5.31915 5.38720 5.49436 5.56454 5.60490 5.81114 5.93406 5.98619 6.22000 6.52981 6.69996 6.76582 6.88168 6.90087 7.44105 8.15805 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.020878 B = 0.003158 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.809468 B = 8862.888872 C = 9319.178890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.039 3.961 3 Si 0.987 3.013 4 H -0.262 1.262 5 H -0.260 1.260 6 H -0.258 1.258 7 C -0.474 4.474 8 H 0.085 0.915 9 C 0.103 3.897 10 C -0.253 4.253 11 C -0.034 4.034 12 C -0.294 4.294 13 C 0.569 3.431 14 O -0.610 6.610 15 N -0.718 5.718 16 C 0.143 3.857 17 C -0.068 4.068 18 C 0.085 3.915 19 O -0.587 6.587 20 C -0.099 4.099 21 C -0.127 4.127 22 C -0.117 4.117 23 C -0.122 4.122 24 C -0.052 4.052 25 C -0.195 4.195 26 H 0.297 0.703 27 H 0.104 0.896 28 H 0.100 0.900 29 H 0.405 0.595 30 H 0.051 0.949 31 H 0.047 0.953 32 H 0.040 0.960 33 H 0.072 0.928 34 H 0.393 0.607 35 H 0.081 0.919 36 H 0.056 0.944 37 H 0.057 0.943 38 H 0.082 0.918 39 H 0.070 0.930 40 H 0.081 0.919 41 H 0.060 0.940 42 H 0.083 0.917 43 H 0.122 0.878 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.943 -4.177 10.782 16.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.180 4.180 3 Si 0.807 3.193 4 H -0.187 1.187 5 H -0.185 1.185 6 H -0.182 1.182 7 C -0.501 4.501 8 H 0.103 0.897 9 C 0.100 3.900 10 C -0.272 4.272 11 C -0.053 4.053 12 C -0.298 4.298 13 C 0.362 3.638 14 O -0.495 6.495 15 N -0.370 5.370 16 C 0.019 3.981 17 C -0.069 4.069 18 C 0.008 3.992 19 O -0.395 6.395 20 C -0.137 4.137 21 C -0.164 4.164 22 C -0.154 4.154 23 C -0.160 4.160 24 C -0.071 4.071 25 C -0.215 4.215 26 H 0.109 0.891 27 H 0.122 0.878 28 H 0.118 0.882 29 H 0.242 0.758 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.090 0.910 34 H 0.243 0.757 35 H 0.100 0.900 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.101 0.899 39 H 0.089 0.911 40 H 0.099 0.901 41 H 0.079 0.921 42 H 0.101 0.899 43 H 0.139 0.861 44 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -11.530 -5.228 10.771 16.622 hybrid contribution 0.090 1.283 -0.659 1.445 sum -11.440 -3.945 10.112 15.770 Atomic orbital electron populations 1.69755 1.09214 1.31662 1.31424 1.26913 0.95547 1.04765 0.90774 0.85109 0.79285 0.75346 0.79591 1.18666 1.18450 1.18151 1.20110 0.98841 0.92270 1.38904 0.89707 1.18123 0.91190 0.92788 0.87940 1.20857 1.05366 0.92790 1.08205 1.20504 0.93607 0.97017 0.94161 1.19179 1.04603 0.92175 1.13849 1.18461 0.79589 0.88530 0.77201 1.90609 1.67839 1.32625 1.58398 1.45727 1.30739 1.10448 1.50083 1.21268 0.92811 0.86104 0.97877 1.21505 0.93058 0.97635 0.94668 1.22345 0.96947 0.92704 0.87247 1.86452 1.68219 1.45764 1.39094 1.22262 1.00189 0.95035 0.96209 1.22567 1.01089 0.97331 0.95449 1.22326 1.02054 0.94341 0.96707 1.22289 1.01375 0.99450 0.92840 1.20676 0.97663 0.91438 0.97333 1.20984 1.00532 0.97338 1.02613 0.89130 0.87816 0.88188 0.75785 0.93077 0.93426 0.94190 0.90973 0.75739 0.90026 0.92541 0.92370 0.89933 0.91113 0.90075 0.92075 0.89854 0.86063 0.86754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.62 11.00 21.87 0.24 -37.38 16 2 C 0.04 1.80 5.13 85.35 0.44 2.24 16 3 Si 0.99 34.40 29.60 68.60 2.03 36.43 16 4 H -0.26 -8.87 7.11 99.48 0.71 -8.16 16 5 H -0.26 -8.50 7.11 99.48 0.71 -7.80 16 6 H -0.26 -8.94 7.11 99.48 0.71 -8.24 16 7 C -0.47 -23.91 9.04 23.46 0.21 -23.70 16 8 H 0.08 4.11 7.91 -2.91 -0.02 4.09 16 9 C 0.10 5.35 5.57 -21.28 -0.12 5.24 16 10 C -0.25 -12.73 9.73 22.47 0.22 -12.51 16 11 C -0.03 -1.66 9.52 22.25 0.21 -1.45 16 12 C -0.29 -13.74 5.89 -19.93 -0.12 -13.86 16 13 C 0.57 25.13 7.76 86.73 0.67 25.80 16 14 O -0.61 -30.88 16.32 -3.99 -0.07 -30.94 16 15 N -0.72 -24.36 4.70 -466.16 -2.19 -26.55 16 16 C 0.14 4.32 4.14 86.38 0.36 4.68 16 17 C -0.07 -1.45 0.48 -51.46 -0.02 -1.47 16 18 C 0.09 1.68 5.41 71.98 0.39 2.06 16 19 O -0.59 -13.03 12.74 -148.98 -1.90 -14.93 16 20 C -0.10 -1.86 5.58 31.69 0.18 -1.68 16 21 C -0.13 -2.00 6.91 31.91 0.22 -1.78 16 22 C -0.12 -1.70 6.83 31.67 0.22 -1.48 16 23 C -0.12 -2.19 5.48 31.32 0.17 -2.02 16 24 C -0.05 -2.30 9.47 22.25 0.21 -2.08 16 25 C -0.20 -9.61 8.63 22.47 0.19 -9.42 16 26 H 0.30 12.39 8.29 -92.71 -0.77 11.63 16 27 H 0.10 4.91 8.06 -2.91 -0.02 4.89 16 28 H 0.10 4.84 7.63 -2.91 -0.02 4.82 16 29 H 0.40 11.88 5.08 -92.70 -0.47 11.41 16 30 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.05 1.69 7.74 -2.39 -0.02 1.67 16 32 H 0.04 0.84 7.03 -2.39 -0.02 0.82 16 33 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.39 5.51 9.12 -74.05 -0.68 4.84 16 35 H 0.08 1.35 7.85 -2.39 -0.02 1.33 16 36 H 0.06 1.22 7.84 -2.39 -0.02 1.20 16 37 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 38 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 41 H 0.06 1.30 7.36 -2.39 -0.02 1.28 16 42 H 0.08 1.25 7.67 -2.39 -0.02 1.23 16 43 H 0.12 4.34 6.37 -2.91 -0.02 4.32 16 44 H 0.11 5.65 6.21 -2.91 -0.02 5.63 16 Total: -1.00 -64.71 354.25 1.42 -63.28 By element: Atomic # 1 Polarization: 41.65 SS G_CDS: -0.12 Total: 41.53 kcal Atomic # 6 Polarization: -34.87 SS G_CDS: 3.43 Total: -31.44 kcal Atomic # 7 Polarization: -61.98 SS G_CDS: -1.95 Total: -63.93 kcal Atomic # 8 Polarization: -43.91 SS G_CDS: -1.96 Total: -45.87 kcal Atomic # 14 Polarization: 34.40 SS G_CDS: 2.03 Total: 36.43 kcal Total: -64.71 1.42 -63.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354238721.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.428 kcal (2) G-P(sol) polarization free energy of solvation -64.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds