Wall clock time and date at job start Tue Mar 31 2020 08:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86793 * 120.00120 * 2 1 4 4 H 1.48499 * 109.47566 * 270.00400 * 3 2 1 5 5 H 1.48501 * 109.47077 * 30.00718 * 3 2 1 6 6 H 1.48504 * 109.47216 * 150.00253 * 3 2 1 7 7 C 1.37876 * 119.99950 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00126 * 186.11257 * 7 2 1 9 9 C 1.50700 * 119.99875 * 6.11141 * 7 2 1 10 10 H 1.09003 * 109.47740 * 25.85161 * 9 7 2 11 11 C 1.53005 * 109.47370 * 145.85420 * 9 7 2 12 12 C 1.50694 * 109.46783 * 295.00255 * 11 9 7 13 13 O 1.21276 * 120.00321 * 359.97438 * 12 11 9 14 14 N 1.34786 * 119.99925 * 179.97438 * 12 11 9 15 15 C 1.46493 * 119.99980 * 179.97438 * 14 12 11 16 16 C 1.53184 * 109.54568 * 274.55701 * 15 14 12 17 17 C 1.53089 * 109.16593 * 183.15626 * 16 15 14 18 18 O 1.42899 * 109.41399 * 57.60568 * 17 16 15 19 19 C 1.42902 * 114.09990 * 298.83905 * 18 17 16 20 20 C 1.53096 * 109.40948 * 61.16275 * 19 18 17 21 21 C 1.50703 * 109.47262 * 265.85504 * 9 7 2 22 22 C 1.38244 * 119.99747 * 303.45644 * 21 9 7 23 23 C 1.38232 * 119.99825 * 179.80816 * 22 21 9 24 24 C 1.38240 * 120.00007 * 0.40269 * 23 22 21 25 25 C 1.38233 * 120.00014 * 359.85013 * 24 23 22 26 26 C 1.38230 * 119.99867 * 359.96340 * 25 24 23 27 27 H 0.97001 * 120.00004 * 359.97438 * 1 2 3 28 28 H 1.08991 * 109.47222 * 174.99858 * 11 9 7 29 29 H 1.09000 * 109.46526 * 54.99780 * 11 9 7 30 30 H 0.96994 * 119.99639 * 0.27922 * 14 12 11 31 31 H 1.08996 * 109.54798 * 34.82325 * 15 14 12 32 32 H 1.09003 * 109.51717 * 303.06216 * 16 15 14 33 33 H 1.09001 * 109.52075 * 63.24242 * 16 15 14 34 34 H 1.08996 * 109.47770 * 297.62276 * 17 16 15 35 35 H 1.08998 * 109.48299 * 177.59047 * 17 16 15 36 36 H 1.08995 * 109.48444 * 301.17747 * 19 18 17 37 37 H 1.09000 * 109.49207 * 181.14775 * 19 18 17 38 38 H 1.09000 * 109.51769 * 182.48045 * 20 19 18 39 39 H 1.09003 * 109.52204 * 62.29867 * 20 19 18 40 40 H 1.08000 * 119.99992 * 359.97438 * 22 21 9 41 41 H 1.08003 * 119.99829 * 180.23114 * 23 22 21 42 42 H 1.07997 * 120.00026 * 179.83424 * 24 23 22 43 43 H 1.07996 * 119.99968 * 179.97438 * 25 24 23 44 44 H 1.08005 * 120.00229 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0799 -1.1968 0.0991 9 6 1.2574 -2.4953 -0.1401 10 1 0.3199 -2.3214 -0.6683 11 6 2.1101 -3.4910 -0.9291 12 6 2.2983 -2.9864 -2.3365 13 8 1.7991 -1.9343 -2.6753 14 7 3.0213 -3.7043 -3.2188 15 6 3.2038 -3.2140 -4.5872 16 6 2.0141 -3.6469 -5.4496 17 6 2.2508 -3.1985 -6.8940 18 8 3.4767 -3.7577 -7.3701 19 6 4.6299 -3.3499 -6.6311 20 6 4.4886 -3.8045 -5.1760 21 6 0.9664 -3.0567 1.2279 22 6 2.0019 -3.2923 2.1130 23 6 1.7346 -3.8035 3.3692 24 6 0.4326 -4.0869 3.7374 25 6 -0.6023 -3.8563 2.8504 26 6 -0.3353 -3.3415 1.5957 27 1 -0.4850 0.8401 0.0004 28 1 1.6092 -4.4587 -0.9539 29 1 3.0825 -3.5975 -0.4482 30 1 3.4171 -4.5477 -2.9490 31 1 3.2728 -2.1263 -4.5786 32 1 1.9160 -4.7320 -5.4164 33 1 1.1021 -3.1861 -5.0698 34 1 2.3084 -2.1108 -6.9321 35 1 1.4275 -3.5412 -7.5207 36 1 4.7186 -2.2641 -6.6657 37 1 5.5204 -3.8015 -7.0682 38 1 5.3465 -3.4563 -4.6008 39 1 4.4405 -4.8927 -5.1374 40 1 3.0194 -3.0744 1.8239 41 1 2.5432 -3.9840 4.0620 42 1 0.2241 -4.4888 4.7178 43 1 -1.6194 -4.0781 3.1379 44 1 -1.1439 -3.1608 0.9028 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354713314.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:49 Heat of formation + Delta-G solvation = -71.582080 kcal Electronic energy + Delta-G solvation = -24823.856018 eV Core-core repulsion = 21319.369885 eV Total energy + Delta-G solvation = -3504.486133 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.81935 -38.68143 -38.02779 -34.98541 -33.85994 -31.66956 -31.20602 -31.11054 -29.99857 -28.70246 -25.79135 -24.24973 -23.65865 -22.61818 -21.61141 -20.42538 -20.11274 -19.15560 -16.81564 -16.50505 -16.27066 -16.08389 -15.63945 -15.24449 -14.85493 -14.54953 -14.32088 -14.11828 -13.84248 -13.59433 -13.45844 -12.93495 -12.58611 -12.45170 -12.31939 -11.94827 -11.81742 -11.61502 -11.47846 -11.37615 -10.93924 -10.84670 -10.70730 -10.56359 -10.41998 -10.25056 -10.05336 -9.82145 -9.43631 -9.05956 -8.82958 -8.57123 -8.31843 -8.03652 -7.59633 -5.92973 -3.92297 2.29730 2.35636 3.38206 3.43738 3.45258 3.54583 3.61604 3.80252 4.52234 4.64746 4.76005 4.81289 4.88121 5.09136 5.16385 5.32979 5.40821 5.44851 5.55819 5.64646 5.66943 5.73669 5.76343 5.78528 5.85499 5.93059 6.09760 6.12219 6.20020 6.27193 6.31313 6.42218 6.54749 6.81840 6.91943 6.95045 7.05778 7.07113 7.31898 7.45449 7.53935 7.86248 7.95984 8.05280 8.12154 8.39408 9.07041 9.10559 9.69612 11.17286 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.014212 B = 0.004152 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.761614 B = 6742.767584 C = 7871.014516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.079 3.921 3 Si 0.886 3.114 4 H -0.281 1.281 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.491 4.491 8 H 0.050 0.950 9 C 0.080 3.920 10 H 0.071 0.929 11 C -0.123 4.123 12 C 0.513 3.487 13 O -0.495 6.495 14 N -0.746 5.746 15 C 0.146 3.854 16 C -0.166 4.166 17 C 0.063 3.937 18 O -0.386 6.386 19 C 0.065 3.935 20 C -0.162 4.162 21 C -0.020 4.020 22 C -0.116 4.116 23 C -0.132 4.132 24 C -0.156 4.156 25 C -0.128 4.128 26 C -0.119 4.119 27 H 0.259 0.741 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.392 0.608 31 H 0.086 0.914 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.053 0.947 35 H 0.094 0.906 36 H 0.053 0.947 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.113 0.887 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.105 0.895 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.133 -10.519 -6.903 13.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.125 4.125 3 Si 0.714 3.286 4 H -0.207 1.207 5 H -0.215 1.215 6 H -0.201 1.201 7 C -0.529 4.529 8 H 0.068 0.932 9 C 0.061 3.939 10 H 0.090 0.910 11 C -0.163 4.163 12 C 0.300 3.700 13 O -0.366 6.366 14 N -0.401 5.401 15 C 0.041 3.959 16 C -0.205 4.205 17 C -0.014 4.014 18 O -0.305 6.305 19 C -0.013 4.013 20 C -0.200 4.200 21 C -0.021 4.021 22 C -0.134 4.134 23 C -0.150 4.150 24 C -0.174 4.174 25 C -0.146 4.146 26 C -0.137 4.137 27 H 0.068 0.932 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.225 0.775 31 H 0.104 0.896 32 H 0.088 0.912 33 H 0.100 0.900 34 H 0.071 0.929 35 H 0.112 0.888 36 H 0.071 0.929 37 H 0.113 0.887 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.131 0.869 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.123 0.877 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 5.587 -9.687 -7.280 13.343 hybrid contribution 0.632 0.832 0.595 1.202 sum 6.218 -8.855 -6.685 12.719 Atomic orbital electron populations 1.69913 1.05922 1.26376 1.49623 1.24803 0.94650 0.98810 0.94197 0.86706 0.79848 0.84062 0.77960 1.20703 1.21495 1.20149 1.20671 0.92373 0.89619 1.50214 0.93211 1.17831 0.97534 0.91407 0.87108 0.91040 1.21799 1.02304 0.99938 0.92270 1.20931 0.77577 0.84337 0.87191 1.90752 1.45879 1.21432 1.78533 1.46271 1.57046 1.25722 1.11052 1.20772 0.93218 0.99882 0.82042 1.22615 1.00288 1.02159 0.95449 1.22581 0.86566 0.97789 0.94461 1.87902 1.15082 1.71703 1.55797 1.22523 0.88803 0.99302 0.90646 1.22485 0.98408 1.01992 0.97162 1.20739 0.91940 0.90354 0.99066 1.20944 0.99386 0.99574 0.93459 1.20974 0.96068 1.01275 0.96686 1.20792 0.93346 1.04287 0.98987 1.20982 0.97973 1.00980 0.94688 1.21087 0.97091 0.99357 0.96187 0.93156 0.91707 0.90579 0.77512 0.89559 0.91153 0.90008 0.92867 0.88772 0.92906 0.88715 0.90284 0.90704 0.86944 0.87689 0.87820 0.87653 0.86863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.92 12.87 55.43 0.71 -25.21 16 2 C 0.08 2.22 5.45 -17.82 -0.10 2.12 16 3 Si 0.89 22.28 29.54 -169.99 -5.02 17.26 16 4 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 7 C -0.49 -13.15 6.37 -34.44 -0.22 -13.37 16 8 H 0.05 1.33 7.82 -52.49 -0.41 0.92 16 9 C 0.08 1.90 1.67 -92.92 -0.16 1.75 16 10 H 0.07 1.95 6.98 -51.93 -0.36 1.59 16 11 C -0.12 -2.34 4.95 -27.88 -0.14 -2.48 16 12 C 0.51 10.00 7.55 -10.98 -0.08 9.91 16 13 O -0.50 -12.13 14.65 5.56 0.08 -12.05 16 14 N -0.75 -10.84 5.08 -53.63 -0.27 -11.11 16 15 C 0.15 1.98 2.54 -67.75 -0.17 1.80 16 16 C -0.17 -2.13 5.72 -26.59 -0.15 -2.29 16 17 C 0.06 0.72 6.84 37.20 0.25 0.97 16 18 O -0.39 -4.58 10.76 -35.23 -0.38 -4.96 16 19 C 0.06 0.64 6.84 37.21 0.25 0.89 16 20 C -0.16 -1.65 5.61 -26.59 -0.15 -1.80 16 21 C -0.02 -0.45 4.77 -104.62 -0.50 -0.95 16 22 C -0.12 -2.33 8.86 -39.58 -0.35 -2.68 16 23 C -0.13 -2.37 10.05 -39.58 -0.40 -2.77 16 24 C -0.16 -2.72 10.05 -39.58 -0.40 -3.12 16 25 C -0.13 -2.37 10.05 -39.59 -0.40 -2.77 16 26 C -0.12 -2.52 9.67 -39.59 -0.38 -2.90 16 27 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 28 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.08 1.34 7.77 -51.93 -0.40 0.93 16 30 H 0.39 4.48 8.61 -40.82 -0.35 4.13 16 31 H 0.09 1.39 7.58 -51.93 -0.39 1.00 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.11 2.18 7.76 -52.49 -0.41 1.78 16 41 H 0.10 1.59 8.06 -52.48 -0.42 1.17 16 42 H 0.10 1.51 8.06 -52.49 -0.42 1.09 16 43 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 44 H 0.11 2.42 7.95 -52.48 -0.42 2.00 16 LS Contribution 361.44 15.07 5.45 5.45 Total: -1.00 -32.30 361.44 -9.47 -41.77 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -6.95 Total: 6.52 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: -3.08 Total: -17.66 kcal Atomic # 7 Polarization: -36.76 SS G_CDS: 0.44 Total: -36.32 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: -0.30 Total: -17.01 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.30 -9.47 -41.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354713314.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.811 kcal (2) G-P(sol) polarization free energy of solvation -32.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds