Wall clock time and date at job start Tue Mar 31 2020 08:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86793 * 120.00120 * 2 1 4 4 H 1.48499 * 109.47566 * 270.00400 * 3 2 1 5 5 H 1.48501 * 109.47077 * 30.00718 * 3 2 1 6 6 H 1.48504 * 109.47216 * 150.00253 * 3 2 1 7 7 C 1.37876 * 119.99950 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00126 * 186.11257 * 7 2 1 9 9 C 1.50700 * 119.99875 * 6.11141 * 7 2 1 10 10 H 1.09003 * 109.47740 * 25.85161 * 9 7 2 11 11 C 1.53005 * 109.47370 * 145.85420 * 9 7 2 12 12 C 1.50694 * 109.46783 * 295.00255 * 11 9 7 13 13 O 1.21276 * 120.00321 * 359.97438 * 12 11 9 14 14 N 1.34786 * 119.99925 * 179.97438 * 12 11 9 15 15 C 1.46493 * 119.99980 * 179.97438 * 14 12 11 16 16 C 1.53184 * 109.54568 * 274.55701 * 15 14 12 17 17 C 1.53089 * 109.16593 * 183.15626 * 16 15 14 18 18 O 1.42899 * 109.41399 * 57.60568 * 17 16 15 19 19 C 1.42902 * 114.09990 * 298.83905 * 18 17 16 20 20 C 1.53096 * 109.40948 * 61.16275 * 19 18 17 21 21 C 1.50703 * 109.47262 * 265.85504 * 9 7 2 22 22 C 1.38244 * 119.99747 * 303.45644 * 21 9 7 23 23 C 1.38232 * 119.99825 * 179.80816 * 22 21 9 24 24 C 1.38240 * 120.00007 * 0.40269 * 23 22 21 25 25 C 1.38233 * 120.00014 * 359.85013 * 24 23 22 26 26 C 1.38230 * 119.99867 * 359.96340 * 25 24 23 27 27 H 0.97001 * 120.00004 * 359.97438 * 1 2 3 28 28 H 1.08991 * 109.47222 * 174.99858 * 11 9 7 29 29 H 1.09000 * 109.46526 * 54.99780 * 11 9 7 30 30 H 0.96994 * 119.99639 * 0.27922 * 14 12 11 31 31 H 1.08996 * 109.54798 * 34.82325 * 15 14 12 32 32 H 1.09003 * 109.51717 * 303.06216 * 16 15 14 33 33 H 1.09001 * 109.52075 * 63.24242 * 16 15 14 34 34 H 1.08996 * 109.47770 * 297.62276 * 17 16 15 35 35 H 1.08998 * 109.48299 * 177.59047 * 17 16 15 36 36 H 1.08995 * 109.48444 * 301.17747 * 19 18 17 37 37 H 1.09000 * 109.49207 * 181.14775 * 19 18 17 38 38 H 1.09000 * 109.51769 * 182.48045 * 20 19 18 39 39 H 1.09003 * 109.52204 * 62.29867 * 20 19 18 40 40 H 1.08000 * 119.99992 * 359.97438 * 22 21 9 41 41 H 1.08003 * 119.99829 * 180.23114 * 23 22 21 42 42 H 1.07997 * 120.00026 * 179.83424 * 24 23 22 43 43 H 1.07996 * 119.99968 * 179.97438 * 25 24 23 44 44 H 1.08005 * 120.00229 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0799 -1.1968 0.0991 9 6 1.2574 -2.4953 -0.1401 10 1 0.3199 -2.3214 -0.6683 11 6 2.1101 -3.4910 -0.9291 12 6 2.2983 -2.9864 -2.3365 13 8 1.7991 -1.9343 -2.6753 14 7 3.0213 -3.7043 -3.2188 15 6 3.2038 -3.2140 -4.5872 16 6 2.0141 -3.6469 -5.4496 17 6 2.2508 -3.1985 -6.8940 18 8 3.4767 -3.7577 -7.3701 19 6 4.6299 -3.3499 -6.6311 20 6 4.4886 -3.8045 -5.1760 21 6 0.9664 -3.0567 1.2279 22 6 2.0019 -3.2923 2.1130 23 6 1.7346 -3.8035 3.3692 24 6 0.4326 -4.0869 3.7374 25 6 -0.6023 -3.8563 2.8504 26 6 -0.3353 -3.3415 1.5957 27 1 -0.4850 0.8401 0.0004 28 1 1.6092 -4.4587 -0.9539 29 1 3.0825 -3.5975 -0.4482 30 1 3.4171 -4.5477 -2.9490 31 1 3.2728 -2.1263 -4.5786 32 1 1.9160 -4.7320 -5.4164 33 1 1.1021 -3.1861 -5.0698 34 1 2.3084 -2.1108 -6.9321 35 1 1.4275 -3.5412 -7.5207 36 1 4.7186 -2.2641 -6.6657 37 1 5.5204 -3.8015 -7.0682 38 1 5.3465 -3.4563 -4.6008 39 1 4.4405 -4.8927 -5.1374 40 1 3.0194 -3.0744 1.8239 41 1 2.5432 -3.9840 4.0620 42 1 0.2241 -4.4888 4.7178 43 1 -1.6194 -4.0781 3.1379 44 1 -1.1439 -3.1608 0.9028 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354713314.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:48 Heat of formation + Delta-G solvation = -91.954100 kcal Electronic energy + Delta-G solvation = -24824.739415 eV Core-core repulsion = 21319.369885 eV Total energy + Delta-G solvation = -3505.369530 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.05745 -40.06118 -39.43646 -36.31036 -35.60509 -33.48625 -32.50732 -32.09375 -31.49499 -30.19926 -27.60039 -25.57344 -24.58793 -24.17441 -23.12433 -21.65712 -21.45992 -20.73444 -18.52142 -17.99717 -17.65503 -17.11359 -16.96719 -16.57045 -16.24506 -16.07130 -15.76616 -15.53854 -15.32703 -14.90205 -14.58407 -14.37817 -14.21245 -13.96740 -13.56571 -13.55007 -13.29907 -13.16977 -12.87807 -12.59488 -12.51833 -12.42214 -12.32000 -11.91511 -11.82639 -11.69887 -11.40688 -11.31008 -10.96286 -10.83500 -10.55507 -10.27696 -9.90341 -9.53802 -9.18328 -8.04883 -6.07052 0.78328 0.84741 1.33865 1.38452 1.43041 1.99169 2.36090 2.45211 2.92490 3.18950 3.36057 3.69367 3.81780 3.99594 4.10475 4.16681 4.25659 4.26241 4.36157 4.41653 4.48128 4.55389 4.58169 4.65072 4.71173 4.75439 4.77080 4.84775 4.93611 4.99938 5.02985 5.08602 5.17981 5.28772 5.38313 5.53489 5.63565 5.68408 5.78708 5.84271 5.96023 6.17696 6.19248 6.42162 6.47135 6.81415 7.01072 7.55662 7.63058 9.04943 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.014212 B = 0.004152 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.761614 B = 6742.767584 C = 7871.014516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.023 3.977 3 Si 0.934 3.066 4 H -0.290 1.290 5 H -0.287 1.287 6 H -0.262 1.262 7 C -0.483 4.483 8 H 0.047 0.953 9 C 0.083 3.917 10 H 0.022 0.978 11 C -0.117 4.117 12 C 0.511 3.489 13 O -0.556 6.556 14 N -0.724 5.724 15 C 0.141 3.859 16 C -0.161 4.161 17 C 0.067 3.933 18 O -0.394 6.394 19 C 0.060 3.940 20 C -0.151 4.151 21 C -0.044 4.044 22 C -0.127 4.127 23 C -0.126 4.126 24 C -0.148 4.148 25 C -0.129 4.129 26 C -0.144 4.144 27 H 0.253 0.747 28 H 0.090 0.910 29 H 0.097 0.903 30 H 0.412 0.588 31 H 0.054 0.946 32 H 0.082 0.918 33 H 0.051 0.949 34 H 0.047 0.953 35 H 0.110 0.890 36 H 0.050 0.950 37 H 0.123 0.877 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.116 0.884 41 H 0.141 0.859 42 H 0.143 0.857 43 H 0.131 0.869 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.307 -12.837 -5.767 16.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.176 4.176 3 Si 0.761 3.239 4 H -0.217 1.217 5 H -0.213 1.213 6 H -0.186 1.186 7 C -0.521 4.521 8 H 0.065 0.935 9 C 0.063 3.937 10 H 0.041 0.959 11 C -0.157 4.157 12 C 0.299 3.701 13 O -0.432 6.432 14 N -0.379 5.379 15 C 0.036 3.964 16 C -0.200 4.200 17 C -0.010 4.010 18 O -0.313 6.313 19 C -0.017 4.017 20 C -0.189 4.189 21 C -0.045 4.045 22 C -0.145 4.145 23 C -0.144 4.144 24 C -0.166 4.166 25 C -0.147 4.147 26 C -0.163 4.163 27 H 0.062 0.938 28 H 0.108 0.892 29 H 0.115 0.885 30 H 0.248 0.752 31 H 0.072 0.928 32 H 0.101 0.899 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.128 0.872 36 H 0.069 0.931 37 H 0.141 0.859 38 H 0.108 0.892 39 H 0.110 0.890 40 H 0.134 0.866 41 H 0.159 0.841 42 H 0.161 0.839 43 H 0.149 0.851 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 7.816 -12.062 -6.149 15.633 hybrid contribution -0.025 1.427 0.258 1.450 sum 7.791 -10.635 -5.891 14.440 Atomic orbital electron populations 1.70056 1.07131 1.26311 1.52259 1.25482 0.95314 1.01721 0.95077 0.85938 0.79410 0.81202 0.77356 1.21690 1.21295 1.18650 1.20974 0.92237 0.91005 1.47838 0.93481 1.17616 0.95655 0.91795 0.88591 0.95945 1.21678 1.02674 0.99678 0.91630 1.21054 0.77343 0.83789 0.87933 1.90738 1.48625 1.24233 1.79599 1.46006 1.55199 1.25712 1.10936 1.20900 0.95635 0.98393 0.81495 1.22534 0.98603 1.02527 0.96304 1.22560 0.87355 0.97512 0.93612 1.87898 1.15406 1.71779 1.56177 1.22733 0.89075 0.99601 0.90315 1.22431 0.96421 1.02744 0.97259 1.20561 0.93074 0.92447 0.98422 1.21039 0.98891 1.00281 0.94331 1.21377 0.97549 0.99448 0.96040 1.21263 0.92624 1.02566 1.00137 1.21281 0.99966 0.99867 0.93540 1.21100 0.96392 1.01227 0.97557 0.93831 0.89162 0.88506 0.75189 0.92796 0.89921 0.93053 0.93473 0.87170 0.93128 0.85901 0.89157 0.88966 0.86605 0.84116 0.83880 0.85102 0.88938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.95 12.87 21.45 0.28 -56.67 16 2 C 0.02 1.32 5.45 84.65 0.46 1.78 16 3 Si 0.93 47.06 29.54 68.60 2.03 49.08 16 4 H -0.29 -14.90 7.11 99.48 0.71 -14.20 16 5 H -0.29 -14.22 7.11 99.48 0.71 -13.52 16 6 H -0.26 -12.45 7.11 99.48 0.71 -11.74 16 7 C -0.48 -26.61 6.37 25.60 0.16 -26.45 16 8 H 0.05 2.55 7.82 -2.91 -0.02 2.53 16 9 C 0.08 4.07 1.67 -12.28 -0.02 4.05 16 10 H 0.02 1.31 6.98 -2.39 -0.02 1.29 16 11 C -0.12 -4.46 4.95 29.85 0.15 -4.31 16 12 C 0.51 20.44 7.55 87.65 0.66 21.10 16 13 O -0.56 -28.89 14.65 -3.02 -0.04 -28.93 16 14 N -0.72 -20.63 5.08 -441.98 -2.25 -22.88 16 15 C 0.14 3.78 2.54 45.11 0.11 3.90 16 16 C -0.16 -4.16 5.72 30.69 0.18 -3.98 16 17 C 0.07 1.50 6.84 72.01 0.49 1.99 16 18 O -0.39 -8.64 10.76 -148.98 -1.60 -10.24 16 19 C 0.06 1.04 6.84 72.01 0.49 1.54 16 20 C -0.15 -2.73 5.61 30.68 0.17 -2.56 16 21 C -0.04 -1.99 4.77 -19.86 -0.09 -2.08 16 22 C -0.13 -4.94 8.86 22.27 0.20 -4.74 16 23 C -0.13 -4.08 10.05 22.27 0.22 -3.86 16 24 C -0.15 -4.60 10.05 22.27 0.22 -4.37 16 25 C -0.13 -4.53 10.05 22.27 0.22 -4.30 16 26 C -0.14 -6.23 9.67 22.27 0.22 -6.02 16 27 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 28 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 29 H 0.10 3.28 7.77 -2.39 -0.02 3.27 16 30 H 0.41 8.52 8.61 -92.71 -0.80 7.73 16 31 H 0.05 1.82 7.58 -2.39 -0.02 1.81 16 32 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.05 0.91 8.14 -2.39 -0.02 0.90 16 37 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.12 4.31 7.76 -2.91 -0.02 4.29 16 41 H 0.14 3.54 8.06 -2.91 -0.02 3.51 16 42 H 0.14 3.35 8.06 -2.91 -0.02 3.33 16 43 H 0.13 3.84 8.06 -2.91 -0.02 3.82 16 44 H 0.09 4.24 7.95 -2.91 -0.02 4.22 16 Total: -1.00 -74.81 361.44 2.44 -72.37 By element: Atomic # 1 Polarization: 25.40 SS G_CDS: 0.19 Total: 25.59 kcal Atomic # 6 Polarization: -32.16 SS G_CDS: 3.85 Total: -28.31 kcal Atomic # 7 Polarization: -77.58 SS G_CDS: -1.97 Total: -79.55 kcal Atomic # 8 Polarization: -37.52 SS G_CDS: -1.65 Total: -39.17 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.08 kcal Total: -74.81 2.44 -72.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354713314.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.587 kcal (2) G-P(sol) polarization free energy of solvation -74.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds