Wall clock time and date at job start Tue Mar 31 2020 07:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 119.99768 * 2 1 4 4 H 1.48503 * 109.47224 * 269.99799 * 3 2 1 5 5 H 1.48495 * 109.47284 * 30.00064 * 3 2 1 6 6 H 1.48500 * 109.46959 * 149.99887 * 3 2 1 7 7 C 1.37873 * 119.99832 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99841 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00445 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.47223 * 180.02562 * 9 7 2 11 11 C 1.46498 * 119.99901 * 275.63340 * 10 9 7 12 12 C 1.53007 * 109.46908 * 265.19004 * 11 10 9 13 13 C 1.52994 * 117.49791 * 244.78899 * 12 11 10 14 14 C 1.53000 * 117.49810 * 176.12920 * 12 11 10 15 15 C 1.34774 * 120.00091 * 95.63183 * 10 9 7 16 16 O 1.21282 * 120.00292 * 185.00703 * 15 10 9 17 17 C 1.50697 * 119.99923 * 5.00410 * 15 10 9 18 18 H 1.09000 * 109.47276 * 44.07501 * 17 15 10 19 19 O 1.42904 * 109.47200 * 164.07173 * 17 15 10 20 20 C 1.52997 * 109.47406 * 284.07169 * 17 15 10 21 21 C 1.50701 * 109.47101 * 175.98828 * 20 17 15 22 22 C 1.38243 * 119.99891 * 274.91703 * 21 20 17 23 23 C 1.38227 * 119.99743 * 179.76736 * 22 21 20 24 24 C 1.38230 * 120.00327 * 0.51066 * 23 22 21 25 25 C 1.38235 * 120.00296 * 359.74451 * 24 23 22 26 26 C 1.38230 * 120.00317 * 95.19503 * 21 20 17 27 27 H 0.97000 * 120.00625 * 0.02562 * 1 2 3 28 28 H 1.08996 * 109.46819 * 60.00081 * 9 7 2 29 29 H 1.08994 * 109.47026 * 300.00096 * 9 7 2 30 30 H 1.09000 * 109.47244 * 25.18757 * 11 10 9 31 31 H 1.08999 * 109.47448 * 145.19437 * 11 10 9 32 32 H 1.08999 * 115.54942 * 30.45875 * 12 11 10 33 33 H 1.09000 * 117.50274 * 0.02562 * 13 12 11 34 34 H 1.09003 * 117.49937 * 145.01895 * 13 12 11 35 35 H 1.08997 * 117.49738 * 214.98028 * 14 12 11 36 36 H 1.09003 * 117.49612 * 0.02562 * 14 12 11 37 37 H 0.96693 * 114.00057 * 59.99743 * 19 17 15 38 38 H 1.09004 * 109.47321 * 295.98720 * 20 17 15 39 39 H 1.09002 * 109.47231 * 55.98765 * 20 17 15 40 40 H 1.08000 * 119.99833 * 0.02562 * 22 21 20 41 41 H 1.08010 * 119.99776 * 180.23215 * 23 22 21 42 42 H 1.08004 * 120.00256 * 179.72689 * 24 23 22 43 43 H 1.07991 * 120.00602 * 179.97438 * 25 24 23 44 44 H 1.08005 * 119.99792 * 0.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2031 -3.6127 0.0018 11 6 2.7747 -4.0890 -1.2602 12 6 1.9500 -5.2680 -1.7807 13 6 2.6390 -6.6318 -1.8599 14 6 2.3339 -5.8525 -3.1416 15 6 2.5530 -4.1988 1.1638 16 8 3.4081 -5.0588 1.1759 17 6 1.8819 -3.7855 2.4483 18 1 0.8078 -3.6978 2.2851 19 8 2.1321 -4.7690 3.4544 20 6 2.4403 -2.4360 2.9042 21 6 1.7006 -1.9759 4.1340 22 6 0.5083 -1.2879 4.0064 23 6 -0.1726 -0.8701 5.1344 24 6 0.3439 -1.1309 6.3898 25 6 1.5388 -1.8143 6.5174 26 6 2.2171 -2.2367 5.3893 27 1 -0.4851 0.8400 -0.0004 28 1 0.6248 -2.5571 -0.8897 29 1 0.6241 -2.5567 0.8902 30 1 2.7589 -3.2827 -1.9935 31 1 3.8032 -4.4100 -1.0950 32 1 0.8918 -5.2531 -1.5198 33 1 3.6796 -6.6892 -1.5407 34 1 2.0340 -7.5142 -1.6514 35 1 1.5283 -6.2225 -3.7757 36 1 3.1742 -5.3973 -3.6658 37 1 3.0696 -4.9002 3.6516 38 1 3.5003 -2.5409 3.1359 39 1 2.3133 -1.7025 2.1081 40 1 0.1068 -1.0806 3.0255 41 1 -1.1060 -0.3359 5.0348 42 1 -0.1859 -0.8006 7.2711 43 1 1.9425 -2.0177 7.4981 44 1 3.1511 -2.7699 5.4889 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355652499.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:49:24 Heat of formation + Delta-G solvation = -45.251120 kcal Electronic energy + Delta-G solvation = -25455.694625 eV Core-core repulsion = 21952.350288 eV Total energy + Delta-G solvation = -3503.344337 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.79944 -38.68558 -37.18225 -35.83968 -34.93941 -32.60604 -32.34697 -30.48333 -29.01323 -27.63795 -26.29296 -23.74970 -22.99390 -22.14845 -22.08106 -20.75515 -20.39719 -18.86909 -17.04170 -16.73608 -16.45449 -16.05306 -15.35493 -15.08577 -14.63659 -14.56935 -14.48426 -14.42225 -13.75047 -13.46023 -13.12650 -12.96206 -12.56176 -12.36881 -12.22030 -12.08294 -11.63628 -11.56996 -11.27080 -11.19347 -11.10005 -11.01459 -10.85600 -10.70626 -10.49271 -10.30105 -10.21861 -10.13601 -9.79114 -9.60854 -8.92002 -8.65828 -8.51970 -8.20545 -7.82210 -6.30434 -4.37757 1.74276 1.80683 3.15995 3.22321 3.24754 3.29366 3.73837 4.13961 4.19333 4.25491 4.79226 5.00432 5.05178 5.12606 5.22284 5.23397 5.28780 5.33898 5.43876 5.54665 5.60638 5.65579 5.76624 5.83758 5.91181 5.97410 6.10219 6.13591 6.20311 6.25786 6.34926 6.35606 6.49653 6.55210 6.70737 6.79911 6.82337 6.91936 7.06022 7.15111 7.41860 7.43825 7.64069 7.91328 7.93510 8.24885 8.65960 8.88842 9.29398 10.75096 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.010880 B = 0.006032 C = 0.004256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2572.835383 B = 4640.776022 C = 6577.791591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.072 3.928 3 Si 0.890 3.110 4 H -0.279 1.279 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.541 4.541 8 H 0.063 0.937 9 C 0.232 3.768 10 N -0.588 5.588 11 C 0.150 3.850 12 C -0.160 4.160 13 C -0.173 4.173 14 C -0.180 4.180 15 C 0.490 3.510 16 O -0.566 6.566 17 C 0.107 3.893 18 H 0.120 0.880 19 O -0.544 6.544 20 C -0.131 4.131 21 C -0.060 4.060 22 C -0.106 4.106 23 C -0.122 4.122 24 C -0.134 4.134 25 C -0.128 4.128 26 C -0.113 4.113 27 H 0.267 0.733 28 H 0.037 0.963 29 H 0.041 0.959 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.102 0.898 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.374 0.626 38 H 0.067 0.933 39 H 0.139 0.861 40 H 0.136 0.864 41 H 0.117 0.883 42 H 0.113 0.887 43 H 0.114 0.886 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.479 -4.166 4.314 6.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.133 4.133 3 Si 0.717 3.283 4 H -0.205 1.205 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.579 4.579 8 H 0.082 0.918 9 C 0.112 3.888 10 N -0.319 5.319 11 C 0.027 3.973 12 C -0.180 4.180 13 C -0.210 4.210 14 C -0.218 4.218 15 C 0.278 3.722 16 O -0.447 6.447 17 C 0.045 3.955 18 H 0.138 0.862 19 O -0.349 6.349 20 C -0.169 4.169 21 C -0.060 4.060 22 C -0.124 4.124 23 C -0.140 4.140 24 C -0.152 4.152 25 C -0.146 4.146 26 C -0.131 4.131 27 H 0.077 0.923 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.103 0.897 31 H 0.089 0.911 32 H 0.120 0.880 33 H 0.112 0.888 34 H 0.105 0.895 35 H 0.108 0.892 36 H 0.111 0.889 37 H 0.222 0.778 38 H 0.086 0.914 39 H 0.157 0.843 40 H 0.154 0.846 41 H 0.135 0.865 42 H 0.131 0.869 43 H 0.132 0.868 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 1.089 -4.509 4.320 6.339 hybrid contribution 0.851 1.127 -0.098 1.416 sum 1.940 -3.382 4.222 5.747 Atomic orbital electron populations 1.69907 1.05890 1.27525 1.48659 1.24899 0.94827 0.99102 0.94433 0.86604 0.80106 0.83162 0.78407 1.20464 1.20890 1.19617 1.21411 0.93701 0.90266 1.52498 0.91839 1.19565 0.87681 0.82638 0.98907 1.48204 1.44928 1.33948 1.04838 1.20838 0.95945 0.94539 0.85994 1.22776 1.00412 0.95102 0.99673 1.22951 1.01691 0.95196 1.01212 1.22915 1.03352 1.04777 0.90755 1.21351 0.82957 0.81547 0.86393 1.90588 1.33283 1.33742 1.87083 1.21759 1.01043 0.87532 0.85181 0.86246 1.86557 1.30678 1.60536 1.57113 1.21685 0.98394 0.98423 0.98356 1.19756 0.95173 0.96823 0.94230 1.21366 0.94596 0.96846 0.99620 1.21125 0.99900 1.00390 0.92602 1.21034 0.96598 1.00355 0.97178 1.21006 0.95880 0.99656 0.98078 1.21001 0.99959 0.99938 0.92165 0.92312 0.94520 0.94119 0.89702 0.91108 0.87970 0.88771 0.89550 0.89175 0.88932 0.77781 0.91439 0.84337 0.84599 0.86477 0.86888 0.86827 0.86729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.21 13.29 55.43 0.74 -21.47 16 2 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.89 19.42 29.54 -169.99 -5.02 14.40 16 4 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 6 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 7 C -0.54 -12.72 6.88 -34.44 -0.24 -12.95 16 8 H 0.06 1.54 7.81 -52.48 -0.41 1.13 16 9 C 0.23 5.05 4.66 -5.19 -0.02 5.03 16 10 N -0.59 -11.73 2.47 -175.06 -0.43 -12.16 16 11 C 0.15 2.71 5.70 -4.04 -0.02 2.69 16 12 C -0.16 -2.58 5.98 -90.62 -0.54 -3.12 16 13 C -0.17 -2.53 10.18 -26.70 -0.27 -2.80 16 14 C -0.18 -2.39 10.25 -26.69 -0.27 -2.66 16 15 C 0.49 9.87 6.95 -10.99 -0.08 9.80 16 16 O -0.57 -12.34 15.94 -13.83 -0.22 -12.56 16 17 C 0.11 1.97 2.54 -27.89 -0.07 1.90 16 18 H 0.12 2.28 6.73 -51.93 -0.35 1.93 16 19 O -0.54 -9.60 12.75 -54.62 -0.70 -10.30 16 20 C -0.13 -2.36 4.80 -27.88 -0.13 -2.49 16 21 C -0.06 -1.03 4.89 -104.62 -0.51 -1.54 16 22 C -0.11 -1.87 9.72 -39.58 -0.38 -2.25 16 23 C -0.12 -1.89 10.05 -39.59 -0.40 -2.28 16 24 C -0.13 -1.87 10.05 -39.59 -0.40 -2.27 16 25 C -0.13 -1.79 10.05 -39.58 -0.40 -2.19 16 26 C -0.11 -1.72 9.60 -39.58 -0.38 -2.10 16 27 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 28 H 0.04 0.85 8.11 -51.93 -0.42 0.43 16 29 H 0.04 0.91 5.63 -51.93 -0.29 0.61 16 30 H 0.08 1.52 8.04 -51.93 -0.42 1.10 16 31 H 0.07 1.30 7.24 -51.93 -0.38 0.93 16 32 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 33 H 0.09 1.42 8.03 -51.93 -0.42 1.00 16 34 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.37 5.70 8.68 45.56 0.40 6.10 16 38 H 0.07 1.14 8.05 -51.93 -0.42 0.72 16 39 H 0.14 2.84 4.47 -51.93 -0.23 2.61 16 40 H 0.14 2.61 8.06 -52.49 -0.42 2.19 16 41 H 0.12 1.59 8.06 -52.48 -0.42 1.17 16 42 H 0.11 1.28 8.06 -52.48 -0.42 0.86 16 43 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 44 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 LS Contribution 367.03 15.07 5.53 5.53 Total: -1.00 -26.69 367.03 -10.20 -36.89 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: -5.88 Total: 15.29 kcal Atomic # 6 Polarization: -11.40 SS G_CDS: -4.22 Total: -15.62 kcal Atomic # 7 Polarization: -33.94 SS G_CDS: 0.30 Total: -33.63 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: -0.92 Total: -22.86 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.02 Total: 14.40 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -26.69 -10.20 -36.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355652499.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.364 kcal (2) G-P(sol) polarization free energy of solvation -26.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds