Wall clock time and date at job start Tue Mar 31 2020 07:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99677 * 2 1 4 4 H 1.48502 * 109.47181 * 269.99862 * 3 2 1 5 5 H 1.48494 * 109.47115 * 29.99979 * 3 2 1 6 6 H 1.48503 * 109.46856 * 150.00047 * 3 2 1 7 7 C 1.37877 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99643 * 0.02562 * 7 2 1 9 9 C 1.50692 * 120.00085 * 180.02562 * 7 2 1 10 10 N 1.46502 * 109.47381 * 180.02562 * 9 7 2 11 11 C 1.46501 * 120.00000 * 270.00126 * 10 9 7 12 12 C 1.53001 * 109.47130 * 275.62364 * 11 10 9 13 13 C 1.52998 * 117.49628 * 243.74940 * 12 11 10 14 14 C 1.52991 * 117.49754 * 175.08702 * 12 11 10 15 15 C 1.34776 * 120.00212 * 89.99478 * 10 9 7 16 16 O 1.21285 * 119.99909 * 5.23691 * 15 10 9 17 17 C 1.50694 * 120.00215 * 185.23514 * 15 10 9 18 18 H 1.08997 * 109.47193 * 314.57926 * 17 15 10 19 19 O 1.42898 * 109.47200 * 194.58184 * 17 15 10 20 20 C 1.53006 * 109.47366 * 74.58160 * 17 15 10 21 21 C 1.50695 * 109.47092 * 184.97865 * 20 17 15 22 22 C 1.38234 * 120.00332 * 90.00359 * 21 20 17 23 23 C 1.38231 * 120.00522 * 179.97438 * 22 21 20 24 24 C 1.38245 * 119.99670 * 359.96704 * 23 22 21 25 25 C 1.38229 * 119.99665 * 0.28642 * 24 23 22 26 26 C 1.38231 * 120.00391 * 359.50892 * 25 24 23 27 27 H 0.96998 * 120.00169 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47301 * 59.99792 * 9 7 2 29 29 H 1.09009 * 109.47342 * 299.99870 * 9 7 2 30 30 H 1.09005 * 109.46868 * 35.62291 * 11 10 9 31 31 H 1.08995 * 109.46937 * 155.62265 * 11 10 9 32 32 H 1.09004 * 115.54807 * 29.41160 * 12 11 10 33 33 H 1.08999 * 117.50229 * 359.97438 * 13 12 11 34 34 H 1.08997 * 117.49970 * 145.02058 * 13 12 11 35 35 H 1.09010 * 117.49822 * 214.97615 * 14 12 11 36 36 H 1.09002 * 117.50289 * 359.97438 * 14 12 11 37 37 H 0.96697 * 114.00239 * 299.99526 * 19 17 15 38 38 H 1.08998 * 109.46941 * 64.97254 * 20 17 15 39 39 H 1.08997 * 109.46484 * 304.97810 * 20 17 15 40 40 H 1.08007 * 119.99632 * 359.97024 * 22 21 20 41 41 H 1.08002 * 120.00496 * 179.97438 * 23 22 21 42 42 H 1.07997 * 119.99660 * 180.02562 * 24 23 22 43 43 H 1.08010 * 119.99684 * 179.72362 * 25 24 23 44 44 H 1.08003 * 120.00486 * 180.28059 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1939 0.0011 10 7 3.9999 -2.5751 0.0010 11 6 4.2437 -3.2660 1.2697 12 6 5.6411 -2.9125 1.7827 13 6 6.6608 -4.0477 1.8940 14 6 6.0440 -3.4454 3.1590 15 6 4.2250 -3.2103 -1.1662 16 8 4.1148 -2.6100 -2.2143 17 6 4.6136 -4.6662 -1.1691 18 1 5.3821 -4.8387 -0.4156 19 8 5.1211 -5.0213 -2.4569 20 6 3.3861 -5.5224 -0.8509 21 6 3.7982 -6.9672 -0.7332 22 6 4.1848 -7.4781 0.4917 23 6 4.5624 -8.8034 0.5999 24 6 4.5526 -9.6182 -0.5169 25 6 4.1710 -9.1059 -1.7428 26 6 3.7895 -7.7817 -1.8501 27 1 -0.4850 0.8400 -0.0004 28 1 3.8745 -0.6799 0.8911 29 1 3.8752 -0.6803 -0.8889 30 1 3.4984 -2.9549 2.0018 31 1 4.1747 -4.3429 1.1160 32 1 6.0124 -1.9288 1.4953 33 1 6.3360 -5.0464 1.6022 34 1 7.7030 -3.8107 1.6804 35 1 6.6809 -2.8125 3.7771 36 1 5.3135 -4.0476 3.6993 37 1 4.4893 -4.8932 -3.1776 38 1 2.6529 -5.4177 -1.6506 39 1 2.9469 -5.1920 0.0903 40 1 4.1920 -6.8416 1.3643 41 1 4.8648 -9.2025 1.5568 42 1 4.8472 -10.6538 -0.4323 43 1 4.1677 -9.7414 -2.6162 44 1 3.4870 -7.3826 -2.8070 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355652501.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:49:27 Heat of formation + Delta-G solvation = -36.856622 kcal Electronic energy + Delta-G solvation = -25262.879377 eV Core-core repulsion = 21759.899053 eV Total energy + Delta-G solvation = -3502.980324 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.09885 -39.01079 -37.44155 -36.28794 -34.61099 -32.96810 -32.41924 -30.93687 -29.50010 -28.02861 -26.43648 -24.47147 -22.62978 -22.36104 -22.16471 -21.20836 -20.66196 -18.95858 -17.47038 -16.94894 -16.74745 -16.38958 -15.64226 -15.17277 -15.14684 -15.00467 -14.67426 -14.25539 -13.95216 -13.59407 -13.45063 -13.34671 -12.89441 -12.65560 -12.57823 -12.40163 -11.89407 -11.73538 -11.54868 -11.49196 -11.40794 -11.15329 -11.05387 -10.89332 -10.65081 -10.53116 -10.38001 -10.15578 -9.90969 -9.57625 -9.04190 -8.95438 -8.62907 -8.59781 -7.81913 -6.13154 -4.12428 1.29461 1.36486 3.12941 3.26665 3.32631 3.35056 3.58988 3.76249 3.88859 4.36268 4.44258 4.66412 4.78392 4.80285 4.90683 4.92896 4.96390 5.06348 5.09352 5.13958 5.19886 5.25877 5.32725 5.46602 5.48804 5.63072 5.69613 5.77300 5.84521 5.89858 5.97154 6.01450 6.05659 6.10857 6.33540 6.40485 6.45250 6.59771 6.65061 6.90396 6.95728 7.24851 7.56107 7.66950 8.14307 8.41063 8.80498 8.89698 9.47146 10.99938 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.015738 B = 0.004364 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.668255 B = 6415.027954 C = 7169.902699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.074 3.926 3 Si 0.875 3.125 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.530 4.530 8 H 0.075 0.925 9 C 0.214 3.786 10 N -0.585 5.585 11 C 0.134 3.866 12 C -0.169 4.169 13 C -0.185 4.185 14 C -0.174 4.174 15 C 0.485 3.515 16 O -0.535 6.535 17 C 0.099 3.901 18 H 0.117 0.883 19 O -0.539 6.539 20 C -0.114 4.114 21 C -0.068 4.068 22 C -0.119 4.119 23 C -0.120 4.120 24 C -0.128 4.128 25 C -0.120 4.120 26 C -0.103 4.103 27 H 0.265 0.735 28 H 0.031 0.969 29 H 0.037 0.963 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.108 0.892 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.381 0.619 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.121 0.879 41 H 0.120 0.880 42 H 0.118 0.882 43 H 0.119 0.881 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.955 -16.269 3.780 19.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.129 4.129 3 Si 0.702 3.298 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.190 1.190 7 C -0.569 4.569 8 H 0.093 0.907 9 C 0.093 3.907 10 N -0.316 5.316 11 C 0.010 3.990 12 C -0.189 4.189 13 C -0.221 4.221 14 C -0.211 4.211 15 C 0.271 3.729 16 O -0.413 6.413 17 C 0.036 3.964 18 H 0.135 0.865 19 O -0.344 6.344 20 C -0.152 4.152 21 C -0.068 4.068 22 C -0.137 4.137 23 C -0.138 4.138 24 C -0.146 4.146 25 C -0.138 4.138 26 C -0.121 4.121 27 H 0.075 0.925 28 H 0.049 0.951 29 H 0.055 0.945 30 H 0.109 0.891 31 H 0.092 0.908 32 H 0.126 0.874 33 H 0.112 0.888 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.114 0.886 37 H 0.229 0.771 38 H 0.104 0.896 39 H 0.111 0.889 40 H 0.139 0.861 41 H 0.138 0.862 42 H 0.136 0.864 43 H 0.137 0.863 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 11.250 -15.946 3.552 19.835 hybrid contribution -0.191 1.108 -0.152 1.135 sum 11.058 -14.838 3.400 18.815 Atomic orbital electron populations 1.69888 1.06180 1.27052 1.50330 1.24834 0.94742 0.98932 0.94345 0.86866 0.80209 0.83822 0.78909 1.19904 1.21039 1.19042 1.21294 0.89076 0.94836 1.51681 0.90723 1.19691 0.95623 0.77797 0.97545 1.47866 1.63598 1.15920 1.04237 1.21216 0.94254 0.96484 0.87031 1.22909 0.96623 0.99157 1.00164 1.23075 0.98666 0.97885 1.02523 1.22917 1.03630 1.03957 0.90640 1.21187 0.77841 0.89491 0.84380 1.90671 1.51747 1.67644 1.31198 1.21857 0.96627 0.90350 0.87590 0.86498 1.86536 1.44388 1.87714 1.15785 1.21340 0.97679 0.91333 1.04848 1.19706 0.98644 0.94903 0.93558 1.21058 0.99843 0.95675 0.97093 1.21092 1.00208 0.93954 0.98546 1.21109 1.00780 0.99648 0.93074 1.21124 0.99572 0.95550 0.97567 1.21046 0.99322 0.93558 0.98160 0.92514 0.95089 0.94476 0.89111 0.90764 0.87393 0.88830 0.89015 0.88898 0.88594 0.77067 0.89602 0.88889 0.86129 0.86233 0.86435 0.86273 0.86085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.14 13.96 55.43 0.77 -26.37 16 2 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 3 Si 0.88 21.36 27.47 -169.99 -4.67 16.69 16 4 H -0.27 -6.75 7.11 56.52 0.40 -6.34 16 5 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.27 -6.12 6.54 56.52 0.37 -5.75 16 7 C -0.53 -14.79 9.94 -34.44 -0.34 -15.14 16 8 H 0.07 2.26 8.06 -52.49 -0.42 1.83 16 9 C 0.21 5.11 4.29 -5.20 -0.02 5.09 16 10 N -0.58 -11.54 2.46 -175.06 -0.43 -11.97 16 11 C 0.13 2.02 5.14 -4.04 -0.02 2.00 16 12 C -0.17 -2.23 6.00 -90.62 -0.54 -2.78 16 13 C -0.18 -1.99 9.68 -26.69 -0.26 -2.24 16 14 C -0.17 -1.82 10.25 -26.70 -0.27 -2.09 16 15 C 0.48 9.64 6.96 -10.99 -0.08 9.56 16 16 O -0.54 -12.89 15.86 -13.92 -0.22 -13.11 16 17 C 0.10 1.49 2.51 -27.88 -0.07 1.42 16 18 H 0.12 1.63 6.19 -51.93 -0.32 1.30 16 19 O -0.54 -8.26 12.57 -54.71 -0.69 -8.95 16 20 C -0.11 -1.53 4.63 -27.88 -0.13 -1.66 16 21 C -0.07 -0.82 4.97 -104.63 -0.52 -1.34 16 22 C -0.12 -1.29 9.70 -39.59 -0.38 -1.67 16 23 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 24 C -0.13 -1.24 10.05 -39.58 -0.40 -1.64 16 25 C -0.12 -1.23 10.05 -39.59 -0.40 -1.63 16 26 C -0.10 -1.18 9.40 -39.58 -0.37 -1.56 16 27 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 28 H 0.03 0.71 7.13 -51.93 -0.37 0.34 16 29 H 0.04 0.96 6.78 -51.92 -0.35 0.61 16 30 H 0.09 1.43 8.11 -51.93 -0.42 1.01 16 31 H 0.07 0.94 4.33 -51.93 -0.22 0.71 16 32 H 0.11 1.59 8.14 -51.93 -0.42 1.17 16 33 H 0.09 0.92 7.55 -51.93 -0.39 0.53 16 34 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.09 0.90 8.14 -51.92 -0.42 0.48 16 36 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.38 5.18 8.69 45.56 0.40 5.58 16 38 H 0.09 1.20 8.09 -51.93 -0.42 0.78 16 39 H 0.09 1.25 6.31 -51.93 -0.33 0.92 16 40 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 41 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 42 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 43 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 44 H 0.12 1.28 8.06 -52.48 -0.42 0.85 16 LS Contribution 364.57 15.07 5.49 5.49 Total: -1.00 -33.59 364.57 -9.87 -43.47 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -5.83 Total: 7.98 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: -4.30 Total: -13.23 kcal Atomic # 7 Polarization: -38.68 SS G_CDS: 0.34 Total: -38.34 kcal Atomic # 8 Polarization: -21.15 SS G_CDS: -0.91 Total: -22.06 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.69 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.59 -9.87 -43.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355652501.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.609 kcal (2) G-P(sol) polarization free energy of solvation -33.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds