Wall clock time and date at job start Tue Mar 31 2020 08:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86799 * 119.99922 * 2 1 4 4 H 1.48499 * 109.47501 * 240.00063 * 3 2 1 5 5 H 1.48503 * 109.47189 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47081 * 120.00424 * 3 2 1 7 7 C 1.39940 * 120.00373 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00254 * 162.60354 * 7 2 1 9 9 C 1.41433 * 119.99845 * 342.61330 * 7 2 1 10 10 C 1.40791 * 120.17757 * 154.90768 * 9 7 2 11 11 C 1.37713 * 120.03836 * 180.02562 * 10 9 7 12 12 C 1.38377 * 120.41199 * 359.66970 * 11 10 9 13 13 C 1.39876 * 120.35453 * 0.60787 * 12 11 10 14 14 C 1.47891 * 120.01992 * 179.69098 * 13 12 11 15 15 O 1.21544 * 119.99683 * 179.72292 * 14 13 12 16 16 N 1.34774 * 120.00272 * 359.73048 * 14 13 12 17 17 C 1.46495 * 119.99997 * 179.97438 * 16 14 13 18 18 H 1.08998 * 109.47687 * 325.00418 * 17 16 14 19 19 C 1.53002 * 109.46822 * 85.00121 * 17 16 14 20 20 O 1.42897 * 109.47094 * 65.00057 * 19 17 16 21 21 C 1.52999 * 109.46985 * 204.99796 * 17 16 14 22 22 C 1.52998 * 109.47014 * 65.00591 * 21 17 16 23 23 C 1.53784 * 113.61357 * 272.49301 * 22 21 17 24 24 C 1.53781 * 87.08194 * 220.02070 * 23 22 21 25 25 C 1.53780 * 87.08231 * 25.43250 * 24 23 22 26 26 C 1.39032 * 119.95160 * 359.42059 * 13 12 11 27 27 H 0.96998 * 120.00480 * 359.97438 * 1 2 3 28 28 H 1.07996 * 119.98001 * 0.02562 * 10 9 7 29 29 H 1.08004 * 119.79319 * 179.97438 * 11 10 9 30 30 H 1.08004 * 119.81779 * 180.30198 * 12 11 10 31 31 H 0.96998 * 119.99780 * 359.97438 * 16 14 13 32 32 H 1.08996 * 109.47190 * 305.00015 * 19 17 16 33 33 H 1.08996 * 109.47393 * 184.99835 * 19 17 16 34 34 H 0.96709 * 114.00311 * 180.02562 * 20 19 17 35 35 H 1.09007 * 109.46602 * 185.00367 * 21 17 16 36 36 H 1.08995 * 109.47570 * 305.00265 * 21 17 16 37 37 H 1.09002 * 112.85180 * 43.80598 * 22 21 17 38 38 H 1.08995 * 113.61297 * 334.56797 * 23 22 21 39 39 H 1.08997 * 113.61264 * 105.47142 * 23 22 21 40 40 H 1.09000 * 113.61244 * 270.88677 * 24 23 22 41 41 H 1.08999 * 113.61275 * 139.98262 * 24 23 22 42 42 H 1.08995 * 113.61800 * 220.02080 * 25 24 23 43 43 H 1.09005 * 113.69124 * 89.12590 * 25 24 23 44 44 H 1.08001 * 120.19824 * 180.25235 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0960 1.6965 -1.2125 5 1 1.2772 2.7465 0.0006 6 1 3.0961 1.6964 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0509 -1.2331 -0.2802 9 6 1.3493 -2.4089 0.3649 10 6 1.8190 -3.6484 -0.1097 11 6 1.1751 -4.8122 0.2475 12 6 0.0693 -4.7742 1.0785 13 6 -0.4151 -3.5516 1.5551 14 6 -1.6016 -3.5192 2.4373 15 8 -2.0192 -2.4570 2.8553 16 7 -2.2199 -4.6673 2.7779 17 6 -3.3949 -4.6351 3.6522 18 1 -3.2805 -3.8367 4.3854 19 6 -4.6484 -4.3807 2.8126 20 8 -4.8633 -5.4845 1.9310 21 6 -3.5292 -5.9766 4.3756 22 6 -2.3343 -6.1736 5.3106 23 6 -1.1214 -6.8302 4.6303 24 6 -0.9289 -7.6345 5.9268 25 6 -2.4334 -7.4393 6.1784 26 6 0.2231 -2.3676 1.2035 27 1 -0.4851 0.8400 0.0004 28 1 2.6846 -3.6866 -0.7543 29 1 1.5385 -5.7608 -0.1192 30 1 -0.4254 -5.6932 1.3565 31 1 -1.8868 -5.5149 2.4440 32 1 -4.5160 -3.4698 2.2288 33 1 -5.5099 -4.2683 3.4707 34 1 -5.6430 -5.3911 1.3665 35 1 -4.4510 -5.9849 4.9572 36 1 -3.5544 -6.7834 3.6432 37 1 -2.0864 -5.2751 5.8757 38 1 -1.3837 -7.4454 3.7697 39 1 -0.3080 -6.1350 4.4228 40 1 -0.2953 -7.1355 6.6601 41 1 -0.6455 -8.6734 5.7580 42 1 -2.6790 -7.2359 7.2207 43 1 -3.0555 -8.2206 5.7416 44 1 -0.1451 -1.4217 1.5725 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355678780.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:39:41 Heat of formation + Delta-G solvation = -64.900201 kcal Electronic energy + Delta-G solvation = -24910.930619 eV Core-core repulsion = 21406.734234 eV Total energy + Delta-G solvation = -3504.196385 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.77379 -38.60235 -37.26523 -36.58377 -34.32293 -33.69191 -31.25633 -29.64565 -29.36230 -27.44428 -25.61012 -25.27390 -23.45967 -22.61780 -21.01241 -20.42776 -19.73266 -19.13296 -17.74160 -17.31008 -16.38707 -15.74888 -15.34552 -15.10142 -14.94249 -14.71423 -14.40593 -13.91808 -13.53591 -13.35720 -13.28404 -12.99090 -12.61152 -12.47502 -12.43962 -12.38666 -11.77454 -11.62922 -11.27170 -11.13863 -11.11690 -11.05754 -10.70389 -10.54954 -10.48649 -10.19164 -10.17854 -9.98848 -9.85814 -9.65924 -9.18849 -8.94728 -8.54173 -7.59054 -7.48402 -6.77314 -4.39024 2.25501 2.84798 3.08548 3.10332 3.18497 3.74876 3.89806 3.94157 4.37194 4.48857 4.62714 4.66249 4.69758 4.85961 5.10473 5.19439 5.39117 5.47990 5.59561 5.63917 5.68349 5.69381 5.71223 5.74262 5.85524 5.93407 5.98966 6.09340 6.12831 6.22299 6.30441 6.33115 6.52092 6.75065 6.97159 7.02361 7.06969 7.24224 7.41488 7.64430 7.74148 7.80782 7.96117 8.16535 8.24729 8.53656 8.82991 8.86544 9.02514 10.17512 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.017156 B = 0.003821 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.710619 B = 7325.989486 C = 7894.640644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.074 3.926 3 Si 0.910 3.090 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.462 4.462 8 H 0.080 0.920 9 C 0.099 3.901 10 C -0.211 4.211 11 C -0.099 4.099 12 C -0.214 4.214 13 C -0.127 4.127 14 C 0.564 3.436 15 O -0.553 6.553 16 N -0.719 5.719 17 C 0.151 3.849 18 H 0.095 0.905 19 C 0.062 3.938 20 O -0.568 6.568 21 C -0.110 4.110 22 C -0.109 4.109 23 C -0.137 4.137 24 C -0.143 4.143 25 C -0.137 4.137 26 C -0.093 4.093 27 H 0.284 0.716 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.400 0.600 32 H 0.053 0.947 33 H 0.047 0.953 34 H 0.374 0.626 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.078 0.922 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.438 -10.946 7.963 15.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.145 4.145 3 Si 0.734 3.266 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.491 4.491 8 H 0.098 0.902 9 C 0.097 3.903 10 C -0.231 4.231 11 C -0.117 4.117 12 C -0.234 4.234 13 C -0.130 4.130 14 C 0.355 3.645 15 O -0.431 6.431 16 N -0.372 5.372 17 C 0.046 3.954 18 H 0.113 0.887 19 C -0.017 4.017 20 O -0.372 6.372 21 C -0.148 4.148 22 C -0.128 4.128 23 C -0.174 4.174 24 C -0.181 4.181 25 C -0.175 4.175 26 C -0.113 4.113 27 H 0.095 0.905 28 H 0.113 0.887 29 H 0.110 0.890 30 H 0.107 0.893 31 H 0.237 0.763 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.221 0.779 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.106 0.894 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.096 0.904 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.097 0.903 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -7.415 -10.231 8.556 15.260 hybrid contribution -0.109 0.590 -0.559 0.820 sum -7.524 -9.641 7.997 14.612 Atomic orbital electron populations 1.69782 1.07551 1.29771 1.33824 1.25944 0.94756 1.01460 0.92325 0.86337 0.80109 0.80176 0.79950 1.18994 1.20257 1.18749 1.19547 0.98025 0.91042 1.40525 0.90177 1.17587 0.91231 0.92412 0.89113 1.21102 1.03438 0.92854 1.05709 1.20436 0.96170 0.96692 0.98411 1.20354 1.01244 0.94716 1.07083 1.19484 0.96572 0.95237 1.01717 1.18855 0.83165 0.82930 0.79588 1.90676 1.66909 1.30207 1.55355 1.45898 1.30195 1.09762 1.51355 1.20956 0.84300 0.98630 0.91541 0.88686 1.22699 0.97083 0.89400 0.92547 1.86462 1.51180 1.44008 1.55600 1.21748 0.98020 0.97072 0.97953 1.22557 0.95586 0.97510 0.97121 1.22985 0.98532 0.99088 0.96808 1.22799 0.96518 1.00287 0.98452 1.22945 0.96823 0.98062 0.99643 1.21620 0.96475 0.96411 0.96814 0.90468 0.88684 0.88967 0.89261 0.76349 0.92831 0.93439 0.77941 0.90921 0.90493 0.89365 0.90233 0.91001 0.90430 0.91769 0.91925 0.90297 0.84946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.95 10.97 55.55 0.61 -20.34 16 2 C 0.07 1.89 5.14 -17.34 -0.09 1.80 16 3 Si 0.91 18.93 29.59 -169.99 -5.03 13.90 16 4 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 5 H -0.28 -5.66 7.11 56.52 0.40 -5.25 16 6 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 7 C -0.46 -12.26 9.05 -37.73 -0.34 -12.60 16 8 H 0.08 2.01 7.90 -52.49 -0.41 1.60 16 9 C 0.10 2.64 5.57 -106.87 -0.59 2.05 16 10 C -0.21 -5.07 9.78 -38.81 -0.38 -5.45 16 11 C -0.10 -2.14 10.01 -39.72 -0.40 -2.53 16 12 C -0.21 -4.57 9.55 -38.92 -0.37 -4.94 16 13 C -0.13 -3.03 5.87 -105.04 -0.62 -3.64 16 14 C 0.56 12.35 7.74 -12.31 -0.10 12.25 16 15 O -0.55 -13.71 16.00 5.33 0.09 -13.62 16 16 N -0.72 -12.09 4.31 -54.74 -0.24 -12.33 16 17 C 0.15 2.13 2.36 -67.93 -0.16 1.97 16 18 H 0.10 1.45 7.57 -51.93 -0.39 1.06 16 19 C 0.06 0.81 6.85 37.16 0.25 1.07 16 20 O -0.57 -7.04 12.83 -35.23 -0.45 -7.49 16 21 C -0.11 -1.23 4.34 -26.73 -0.12 -1.34 16 22 C -0.11 -1.20 3.52 -89.80 -0.32 -1.52 16 23 C -0.14 -1.57 6.31 -25.92 -0.16 -1.73 16 24 C -0.14 -1.42 8.08 -25.92 -0.21 -1.63 16 25 C -0.14 -1.28 7.64 -25.92 -0.20 -1.48 16 26 C -0.09 -2.50 8.23 -38.44 -0.32 -2.82 16 27 H 0.28 6.99 8.30 -40.82 -0.34 6.65 16 28 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 29 H 0.09 1.70 8.06 -52.48 -0.42 1.27 16 30 H 0.09 1.62 6.38 -52.48 -0.33 1.28 16 31 H 0.40 6.28 5.78 -40.82 -0.24 6.04 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.37 3.09 9.12 45.56 0.42 3.51 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.08 0.89 7.43 -51.93 -0.39 0.51 16 37 H 0.09 1.06 8.13 -51.93 -0.42 0.64 16 38 H 0.08 0.88 7.90 -51.93 -0.41 0.47 16 39 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.08 0.69 8.10 -51.93 -0.42 0.27 16 44 H 0.13 3.85 5.77 -52.49 -0.30 3.55 16 LS Contribution 360.52 15.07 5.43 5.43 Total: -1.00 -30.22 360.52 -9.55 -39.77 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: -5.84 Total: 15.23 kcal Atomic # 6 Polarization: -16.43 SS G_CDS: -4.11 Total: -20.54 kcal Atomic # 7 Polarization: -33.04 SS G_CDS: 0.37 Total: -32.67 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: -0.37 Total: -21.11 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.03 Total: 13.90 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.22 -9.55 -39.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355678780.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.135 kcal (2) G-P(sol) polarization free energy of solvation -30.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds