Wall clock time and date at job start Tue Mar 31 2020 07:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86805 * 119.99727 * 2 1 4 4 H 1.48501 * 109.46638 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47295 * 300.00136 * 3 2 1 6 6 H 1.48496 * 109.46958 * 60.00175 * 3 2 1 7 7 C 1.38950 * 119.99886 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99425 * 170.96846 * 7 2 1 9 9 N 1.37094 * 120.00148 * 350.96934 * 7 2 1 10 10 C 1.34773 * 120.00060 * 297.86061 * 9 7 2 11 11 O 1.21294 * 120.00065 * 183.30797 * 10 9 7 12 12 C 1.50705 * 120.00149 * 3.29664 * 10 9 7 13 13 H 1.09008 * 109.46249 * 47.01902 * 12 10 9 14 14 O 1.42900 * 109.47164 * 167.01696 * 12 10 9 15 15 C 1.52998 * 109.47310 * 287.02099 * 12 10 9 16 16 C 1.50699 * 109.47126 * 174.99858 * 15 12 10 17 17 C 1.38236 * 119.99983 * 269.72433 * 16 15 12 18 18 C 1.38236 * 120.00040 * 179.76601 * 17 16 15 19 19 C 1.38230 * 119.99780 * 0.50914 * 18 17 16 20 20 C 1.38233 * 120.00032 * 359.74361 * 19 18 17 21 21 C 1.38230 * 119.99976 * 89.99948 * 16 15 12 22 22 C 1.46496 * 120.00034 * 117.85701 * 9 7 2 23 23 C 1.54961 * 110.92615 * 301.96599 * 22 9 7 24 24 C 1.54268 * 104.16548 * 156.29473 * 23 22 9 25 25 C 1.53874 * 106.63813 * 336.44404 * 24 23 22 26 26 C 1.54271 * 106.60031 * 359.97438 * 25 24 23 27 27 H 0.97004 * 120.00753 * 0.02562 * 1 2 3 28 28 H 0.96700 * 113.99931 * 60.00423 * 14 12 10 29 29 H 1.09006 * 109.46934 * 294.99634 * 15 12 10 30 30 H 1.09003 * 109.47326 * 54.99645 * 15 12 10 31 31 H 1.08008 * 119.99550 * 359.97438 * 17 16 15 32 32 H 1.07996 * 119.99864 * 180.23239 * 18 17 16 33 33 H 1.08001 * 119.99746 * 179.72433 * 19 18 17 34 34 H 1.08010 * 119.99802 * 179.97438 * 20 19 18 35 35 H 1.07995 * 120.00440 * 359.97438 * 21 16 15 36 36 H 1.09001 * 110.67720 * 178.65889 * 22 9 7 37 37 H 1.09007 * 110.47642 * 37.64181 * 23 22 9 38 38 H 1.09006 * 110.53000 * 274.97384 * 23 22 9 39 39 H 1.08994 * 110.03369 * 217.14104 * 24 23 22 40 40 H 1.08998 * 110.03147 * 95.75073 * 24 23 22 41 41 H 1.09003 * 110.03310 * 119.25793 * 25 24 23 42 42 H 1.08999 * 110.03290 * 240.64321 * 25 24 23 43 43 H 1.08994 * 110.48995 * 142.28580 * 26 25 24 44 44 H 1.08996 * 110.48483 * 264.80237 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3464 -0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8893 2.3964 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0788 -1.2090 -0.1474 9 7 1.3361 -2.3834 0.1853 10 6 0.6763 -2.6085 1.3387 11 8 0.1315 -3.6756 1.5274 12 6 0.6154 -1.5343 2.3940 13 1 0.3494 -0.5843 1.9304 14 8 -0.3695 -1.8805 3.3698 15 6 1.9814 -1.4066 3.0712 16 6 1.9562 -0.2520 4.0392 17 6 2.3127 1.0142 3.6142 18 6 2.2849 2.0743 4.5010 19 6 1.9109 1.8662 5.8154 20 6 1.5595 0.5990 6.2417 21 6 1.5822 -0.4601 5.3536 22 6 1.3344 -3.3996 -0.8699 23 6 0.7551 -2.8275 -2.1884 24 6 1.3592 -3.7258 -3.2874 25 6 2.6474 -4.3313 -2.7027 26 6 2.7823 -3.7795 -1.2684 27 1 -0.4851 0.8400 -0.0004 28 1 -0.1966 -2.7168 3.8236 29 1 2.2076 -2.3272 3.6094 30 1 2.7467 -1.2304 2.3152 31 1 2.6096 1.1758 2.5884 32 1 2.5598 3.0641 4.1680 33 1 1.8935 2.6936 6.5093 34 1 1.2676 0.4364 7.2688 35 1 1.3076 -1.4500 5.6867 36 1 0.7767 -4.2813 -0.5542 37 1 1.0696 -1.7928 -2.3258 38 1 -0.3325 -2.9002 -2.1913 39 1 1.5937 -3.1302 -4.1695 40 1 0.6587 -4.5191 -3.5481 41 1 2.5716 -5.4185 -2.6789 42 1 3.5068 -4.0302 -3.3017 43 1 3.1731 -4.5464 -0.5998 44 1 3.4264 -2.9003 -1.2569 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356152679.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:49:31 Heat of formation + Delta-G solvation = -72.819708 kcal Electronic energy + Delta-G solvation = -26089.667531 eV Core-core repulsion = 22585.127730 eV Total energy + Delta-G solvation = -3504.539801 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.45069 -38.64076 -37.08757 -35.29838 -34.39336 -32.18454 -31.53478 -30.53146 -28.46142 -27.98816 -26.74656 -25.06729 -23.53732 -22.19826 -20.69339 -19.86849 -19.71002 -19.47047 -17.29933 -16.39158 -16.04164 -15.61424 -15.24532 -14.98038 -14.68805 -14.55259 -14.31322 -13.92480 -13.43210 -13.19522 -13.03646 -12.73906 -12.59869 -12.40384 -12.15709 -11.71314 -11.51145 -11.41632 -11.32346 -10.97164 -10.76514 -10.69004 -10.64254 -10.55202 -10.41629 -10.33940 -10.24532 -9.91505 -9.81910 -9.65456 -8.94478 -8.55299 -8.36823 -7.99695 -7.23367 -6.49122 -4.45363 1.74083 1.76914 2.99587 3.11075 3.13088 3.88218 4.00920 4.20080 4.67994 4.77935 5.18095 5.22213 5.29410 5.31695 5.36293 5.38522 5.47031 5.58177 5.82008 5.88825 5.99781 6.03988 6.09226 6.16624 6.19156 6.24677 6.27479 6.36861 6.41819 6.47859 6.49290 6.54758 6.66021 6.66710 6.81634 6.84668 6.95517 6.98609 7.04949 7.18793 7.25991 7.34691 7.39060 7.98116 8.43412 8.51000 8.82406 9.47433 9.92172 10.53398 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.017893 B = 0.005535 C = 0.004737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.465178 B = 5057.405952 C = 5909.609641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.053 3.947 3 Si 0.887 3.113 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.339 4.339 8 H 0.083 0.917 9 N -0.443 5.443 10 C 0.494 3.506 11 O -0.607 6.607 12 C 0.101 3.899 13 H 0.155 0.845 14 O -0.549 6.549 15 C -0.108 4.108 16 C -0.056 4.056 17 C -0.117 4.117 18 C -0.123 4.123 19 C -0.134 4.134 20 C -0.124 4.124 21 C -0.109 4.109 22 C 0.134 3.866 23 C -0.117 4.117 24 C -0.122 4.122 25 C -0.119 4.119 26 C -0.128 4.128 27 H 0.274 0.726 28 H 0.362 0.638 29 H 0.063 0.937 30 H 0.103 0.897 31 H 0.120 0.880 32 H 0.115 0.885 33 H 0.114 0.886 34 H 0.116 0.884 35 H 0.118 0.882 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.053 0.947 39 H 0.055 0.945 40 H 0.053 0.947 41 H 0.054 0.946 42 H 0.056 0.944 43 H 0.052 0.948 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.776 0.990 3.479 6.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.154 4.154 3 Si 0.713 3.287 4 H -0.186 1.186 5 H -0.205 1.205 6 H -0.190 1.190 7 C -0.467 4.467 8 H 0.101 0.899 9 N -0.163 5.163 10 C 0.284 3.716 11 O -0.492 6.492 12 C 0.039 3.961 13 H 0.171 0.829 14 O -0.352 6.352 15 C -0.146 4.146 16 C -0.056 4.056 17 C -0.135 4.135 18 C -0.141 4.141 19 C -0.152 4.152 20 C -0.142 4.142 21 C -0.127 4.127 22 C 0.029 3.971 23 C -0.156 4.156 24 C -0.161 4.161 25 C -0.157 4.157 26 C -0.166 4.166 27 H 0.085 0.915 28 H 0.208 0.792 29 H 0.082 0.918 30 H 0.121 0.879 31 H 0.138 0.862 32 H 0.133 0.867 33 H 0.132 0.868 34 H 0.134 0.866 35 H 0.136 0.864 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.071 0.929 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.080 1.159 3.353 6.196 hybrid contribution 0.529 0.532 -0.131 0.762 sum 5.610 1.692 3.221 6.687 Atomic orbital electron populations 1.69884 1.05946 1.28164 1.44639 1.25711 0.95237 0.99815 0.94682 0.86556 0.80582 0.82829 0.78704 1.18581 1.20501 1.19015 1.19178 0.91881 0.82217 1.53439 0.89921 1.43162 1.47020 1.15164 1.10932 1.21271 0.78977 0.87446 0.83939 1.90498 1.50418 1.27459 1.80864 1.22249 0.86738 1.00529 0.86558 0.82869 1.86602 1.50780 1.43095 1.54751 1.21302 1.00055 0.95412 0.97865 1.19872 0.96656 0.94908 0.94142 1.21270 1.00006 0.92522 0.99710 1.21062 1.00624 0.98609 0.93774 1.21001 1.01392 0.96920 0.95931 1.21044 1.00788 0.93111 0.99274 1.21007 0.99555 0.98949 0.93151 1.21931 0.94434 0.92335 0.88377 1.22486 0.99148 1.00425 0.93507 1.22088 0.96709 0.98795 0.98460 1.22035 0.97590 0.99342 0.96698 1.22585 0.98645 1.00488 0.94915 0.91549 0.79220 0.91843 0.87887 0.86180 0.86703 0.86774 0.86639 0.86404 0.90200 0.89911 0.92826 0.92602 0.92821 0.92712 0.92547 0.92880 0.90595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.45 11.39 55.50 0.63 -20.81 16 2 C 0.05 1.22 3.94 -17.47 -0.07 1.15 16 3 Si 0.89 17.92 27.17 -169.99 -4.62 13.30 16 4 H -0.26 -5.11 7.11 56.52 0.40 -4.70 16 5 H -0.28 -5.80 7.11 56.52 0.40 -5.39 16 6 H -0.26 -5.21 6.42 56.52 0.36 -4.84 16 7 C -0.34 -7.79 5.19 -14.93 -0.08 -7.86 16 8 H 0.08 1.85 6.99 -52.49 -0.37 1.49 16 9 N -0.44 -10.44 2.40 -105.57 -0.25 -10.69 16 10 C 0.49 12.32 6.53 -10.98 -0.07 12.25 16 11 O -0.61 -16.42 15.68 -14.02 -0.22 -16.64 16 12 C 0.10 2.28 2.53 -27.88 -0.07 2.21 16 13 H 0.15 3.84 4.54 -51.92 -0.24 3.61 16 14 O -0.55 -12.18 12.56 -54.80 -0.69 -12.87 16 15 C -0.11 -2.09 4.90 -27.88 -0.14 -2.23 16 16 C -0.06 -1.01 4.97 -104.63 -0.52 -1.53 16 17 C -0.12 -2.12 9.70 -39.58 -0.38 -2.50 16 18 C -0.12 -1.94 10.05 -39.59 -0.40 -2.33 16 19 C -0.13 -1.92 10.05 -39.59 -0.40 -2.31 16 20 C -0.12 -1.79 10.05 -39.58 -0.40 -2.19 16 21 C -0.11 -1.75 9.40 -39.58 -0.37 -2.12 16 22 C 0.13 2.87 3.29 -65.89 -0.22 2.66 16 23 C -0.12 -2.37 6.39 -25.03 -0.16 -2.53 16 24 C -0.12 -1.97 6.80 -25.61 -0.17 -2.15 16 25 C -0.12 -1.81 6.80 -25.61 -0.17 -1.99 16 26 C -0.13 -2.31 6.36 -25.06 -0.16 -2.47 16 27 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 28 H 0.36 6.93 8.70 45.56 0.40 7.33 16 29 H 0.06 1.12 8.09 -51.93 -0.42 0.70 16 30 H 0.10 2.04 6.37 -51.93 -0.33 1.71 16 31 H 0.12 2.24 4.37 -52.48 -0.23 2.01 16 32 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 33 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 34 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 35 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 36 H 0.08 1.85 7.00 -51.93 -0.36 1.49 16 37 H 0.08 1.83 7.25 -51.92 -0.38 1.46 16 38 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.08 1.41 6.65 -51.93 -0.35 1.07 16 LS Contribution 346.13 15.07 5.22 5.22 Total: -1.00 -27.89 346.13 -9.38 -37.28 By element: Atomic # 1 Polarization: 24.84 SS G_CDS: -5.67 Total: 19.17 kcal Atomic # 6 Polarization: -10.16 SS G_CDS: -3.78 Total: -13.94 kcal Atomic # 7 Polarization: -31.88 SS G_CDS: 0.38 Total: -31.50 kcal Atomic # 8 Polarization: -28.60 SS G_CDS: -0.91 Total: -29.51 kcal Atomic # 14 Polarization: 17.92 SS G_CDS: -4.62 Total: 13.30 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -27.89 -9.38 -37.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356152679.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.544 kcal (2) G-P(sol) polarization free energy of solvation -27.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds