Wall clock time and date at job start Tue Mar 31 2020 07:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86805 * 119.99727 * 2 1 4 4 H 1.48501 * 109.46638 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47295 * 300.00136 * 3 2 1 6 6 H 1.48496 * 109.46958 * 60.00175 * 3 2 1 7 7 C 1.38950 * 119.99886 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99425 * 170.96846 * 7 2 1 9 9 N 1.37094 * 120.00148 * 350.96934 * 7 2 1 10 10 C 1.34773 * 120.00060 * 297.86061 * 9 7 2 11 11 O 1.21294 * 120.00065 * 183.30797 * 10 9 7 12 12 C 1.50705 * 120.00149 * 3.29664 * 10 9 7 13 13 H 1.09008 * 109.46249 * 47.01902 * 12 10 9 14 14 O 1.42900 * 109.47164 * 167.01696 * 12 10 9 15 15 C 1.52998 * 109.47310 * 287.02099 * 12 10 9 16 16 C 1.50699 * 109.47126 * 174.99858 * 15 12 10 17 17 C 1.38236 * 119.99983 * 269.72433 * 16 15 12 18 18 C 1.38236 * 120.00040 * 179.76601 * 17 16 15 19 19 C 1.38230 * 119.99780 * 0.50914 * 18 17 16 20 20 C 1.38233 * 120.00032 * 359.74361 * 19 18 17 21 21 C 1.38230 * 119.99976 * 89.99948 * 16 15 12 22 22 C 1.46496 * 120.00034 * 117.85701 * 9 7 2 23 23 C 1.54961 * 110.92615 * 301.96599 * 22 9 7 24 24 C 1.54268 * 104.16548 * 156.29473 * 23 22 9 25 25 C 1.53874 * 106.63813 * 336.44404 * 24 23 22 26 26 C 1.54271 * 106.60031 * 359.97438 * 25 24 23 27 27 H 0.97004 * 120.00753 * 0.02562 * 1 2 3 28 28 H 0.96700 * 113.99931 * 60.00423 * 14 12 10 29 29 H 1.09006 * 109.46934 * 294.99634 * 15 12 10 30 30 H 1.09003 * 109.47326 * 54.99645 * 15 12 10 31 31 H 1.08008 * 119.99550 * 359.97438 * 17 16 15 32 32 H 1.07996 * 119.99864 * 180.23239 * 18 17 16 33 33 H 1.08001 * 119.99746 * 179.72433 * 19 18 17 34 34 H 1.08010 * 119.99802 * 179.97438 * 20 19 18 35 35 H 1.07995 * 120.00440 * 359.97438 * 21 16 15 36 36 H 1.09001 * 110.67720 * 178.65889 * 22 9 7 37 37 H 1.09007 * 110.47642 * 37.64181 * 23 22 9 38 38 H 1.09006 * 110.53000 * 274.97384 * 23 22 9 39 39 H 1.08994 * 110.03369 * 217.14104 * 24 23 22 40 40 H 1.08998 * 110.03147 * 95.75073 * 24 23 22 41 41 H 1.09003 * 110.03310 * 119.25793 * 25 24 23 42 42 H 1.08999 * 110.03290 * 240.64321 * 25 24 23 43 43 H 1.08994 * 110.48995 * 142.28580 * 26 25 24 44 44 H 1.08996 * 110.48483 * 264.80237 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3464 -0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8893 2.3964 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0788 -1.2090 -0.1474 9 7 1.3361 -2.3834 0.1853 10 6 0.6763 -2.6085 1.3387 11 8 0.1315 -3.6756 1.5274 12 6 0.6154 -1.5343 2.3940 13 1 0.3494 -0.5843 1.9304 14 8 -0.3695 -1.8805 3.3698 15 6 1.9814 -1.4066 3.0712 16 6 1.9562 -0.2520 4.0392 17 6 2.3127 1.0142 3.6142 18 6 2.2849 2.0743 4.5010 19 6 1.9109 1.8662 5.8154 20 6 1.5595 0.5990 6.2417 21 6 1.5822 -0.4601 5.3536 22 6 1.3344 -3.3996 -0.8699 23 6 0.7551 -2.8275 -2.1884 24 6 1.3592 -3.7258 -3.2874 25 6 2.6474 -4.3313 -2.7027 26 6 2.7823 -3.7795 -1.2684 27 1 -0.4851 0.8400 -0.0004 28 1 -0.1966 -2.7168 3.8236 29 1 2.2076 -2.3272 3.6094 30 1 2.7467 -1.2304 2.3152 31 1 2.6096 1.1758 2.5884 32 1 2.5598 3.0641 4.1680 33 1 1.8935 2.6936 6.5093 34 1 1.2676 0.4364 7.2688 35 1 1.3076 -1.4500 5.6867 36 1 0.7767 -4.2813 -0.5542 37 1 1.0696 -1.7928 -2.3258 38 1 -0.3325 -2.9002 -2.1913 39 1 1.5937 -3.1302 -4.1695 40 1 0.6587 -4.5191 -3.5481 41 1 2.5716 -5.4185 -2.6789 42 1 3.5068 -4.0302 -3.3017 43 1 3.1731 -4.5464 -0.5998 44 1 3.4264 -2.9003 -1.2569 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356152679.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:49:30 Heat of formation + Delta-G solvation = -87.851076 kcal Electronic energy + Delta-G solvation = -26090.319340 eV Core-core repulsion = 22585.127730 eV Total energy + Delta-G solvation = -3505.191610 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.16036 -40.01184 -38.69443 -37.05637 -36.19449 -33.60928 -33.36160 -31.73322 -29.98964 -29.47818 -28.29867 -26.89180 -25.11366 -23.40833 -22.03345 -21.56504 -21.40947 -20.98428 -19.05203 -17.84016 -17.64420 -17.38806 -16.90306 -16.42448 -16.17752 -15.99488 -15.79501 -15.53102 -15.04957 -14.89665 -14.39549 -14.21303 -14.13387 -13.79248 -13.54527 -13.34161 -13.28029 -12.97757 -12.91333 -12.61067 -12.39506 -12.17995 -12.04206 -11.98969 -11.89277 -11.87645 -11.73516 -11.57336 -11.34619 -11.16018 -10.72135 -10.09363 -9.75829 -9.47456 -9.09438 -8.32582 -6.33952 0.50802 0.55516 1.37074 1.43138 1.52711 2.03054 2.27463 2.85941 2.94630 3.03730 3.61078 3.88258 3.89682 3.96616 4.02490 4.12793 4.20762 4.30638 4.35893 4.41756 4.51428 4.65851 4.68358 4.71221 4.76221 4.78061 4.80691 4.91557 5.00257 5.03363 5.15642 5.16516 5.22173 5.25460 5.28546 5.41470 5.49076 5.54346 5.58445 5.62868 5.64798 5.83379 6.14173 6.19067 6.62814 6.77993 6.98782 7.57222 8.04351 8.70698 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.017893 B = 0.005535 C = 0.004737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.465178 B = 5057.405952 C = 5909.609641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.026 3.974 3 Si 0.938 3.062 4 H -0.248 1.248 5 H -0.285 1.285 6 H -0.258 1.258 7 C -0.339 4.339 8 H 0.090 0.910 9 N -0.444 5.444 10 C 0.475 3.525 11 O -0.641 6.641 12 C 0.107 3.893 13 H 0.133 0.867 14 O -0.559 6.559 15 C -0.094 4.094 16 C -0.078 4.078 17 C -0.142 4.142 18 C -0.131 4.131 19 C -0.128 4.128 20 C -0.122 4.122 21 C -0.118 4.118 22 C 0.118 3.882 23 C -0.112 4.112 24 C -0.114 4.114 25 C -0.110 4.110 26 C -0.120 4.120 27 H 0.272 0.728 28 H 0.373 0.627 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.107 0.893 32 H 0.134 0.866 33 H 0.150 0.850 34 H 0.148 0.852 35 H 0.128 0.872 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.029 0.971 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.080 0.920 43 H 0.057 0.943 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.405 1.798 4.117 8.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.178 4.178 3 Si 0.761 3.239 4 H -0.171 1.171 5 H -0.212 1.212 6 H -0.183 1.183 7 C -0.467 4.467 8 H 0.108 0.892 9 N -0.163 5.163 10 C 0.265 3.735 11 O -0.530 6.530 12 C 0.046 3.954 13 H 0.150 0.850 14 O -0.364 6.364 15 C -0.132 4.132 16 C -0.078 4.078 17 C -0.160 4.160 18 C -0.149 4.149 19 C -0.146 4.146 20 C -0.140 4.140 21 C -0.136 4.136 22 C 0.014 3.986 23 C -0.151 4.151 24 C -0.152 4.152 25 C -0.148 4.148 26 C -0.158 4.158 27 H 0.081 0.919 28 H 0.221 0.779 29 H 0.091 0.909 30 H 0.110 0.890 31 H 0.125 0.875 32 H 0.152 0.848 33 H 0.167 0.833 34 H 0.166 0.834 35 H 0.146 0.854 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.048 0.952 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.099 0.901 43 H 0.076 0.924 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.742 1.964 3.976 8.070 hybrid contribution -0.027 0.276 -0.282 0.395 sum 6.715 2.240 3.694 7.985 Atomic orbital electron populations 1.70002 1.07594 1.28653 1.46003 1.26251 0.95466 1.02292 0.93828 0.85786 0.80265 0.79384 0.78428 1.17120 1.21188 1.18262 1.19358 0.92110 0.82189 1.53038 0.89235 1.43363 1.46225 1.15703 1.10970 1.21840 0.79092 0.87678 0.84885 1.90450 1.52052 1.28836 1.81618 1.22070 0.88530 0.98504 0.86341 0.85018 1.86542 1.51188 1.43954 1.54710 1.21087 0.97437 0.96827 0.97863 1.19812 0.98749 0.94430 0.94820 1.21327 1.01495 0.93391 0.99762 1.21358 1.00411 0.98821 0.94297 1.21436 0.99415 0.97975 0.95759 1.21456 0.99448 0.92597 1.00481 1.21229 0.99401 1.00317 0.92681 1.22156 0.96919 0.91189 0.88303 1.22378 0.97851 1.00094 0.94741 1.22055 0.97220 0.98546 0.97387 1.22023 0.97874 1.00316 0.94589 1.22508 0.95694 1.00495 0.97098 0.91852 0.77874 0.90884 0.88963 0.87518 0.84814 0.83271 0.83391 0.85368 0.92492 0.92124 0.95167 0.90767 0.91421 0.90851 0.90104 0.92432 0.91167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -46.27 11.39 21.66 0.25 -46.02 16 2 C 0.03 1.21 3.94 84.93 0.34 1.55 16 3 Si 0.94 36.96 27.17 68.60 1.86 38.82 16 4 H -0.25 -9.13 7.11 99.48 0.71 -8.42 16 5 H -0.29 -11.50 7.11 99.48 0.71 -10.79 16 6 H -0.26 -9.81 6.42 99.48 0.64 -9.17 16 7 C -0.34 -15.92 5.19 84.04 0.44 -15.48 16 8 H 0.09 4.04 6.99 -2.91 -0.02 4.02 16 9 N -0.44 -21.65 2.40 -606.32 -1.45 -23.11 16 10 C 0.47 24.66 6.53 87.66 0.57 25.23 16 11 O -0.64 -36.24 15.68 15.63 0.25 -35.99 16 12 C 0.11 5.02 2.53 29.85 0.08 5.09 16 13 H 0.13 6.86 4.54 -2.38 -0.01 6.85 16 14 O -0.56 -25.45 12.56 -130.27 -1.64 -27.08 16 15 C -0.09 -3.70 4.90 29.85 0.15 -3.55 16 16 C -0.08 -2.80 4.97 -19.87 -0.10 -2.90 16 17 C -0.14 -5.03 9.70 22.27 0.22 -4.81 16 18 C -0.13 -3.85 10.05 22.27 0.22 -3.63 16 19 C -0.13 -3.21 10.05 22.27 0.22 -2.99 16 20 C -0.12 -3.14 10.05 22.27 0.22 -2.91 16 21 C -0.12 -3.64 9.40 22.27 0.21 -3.43 16 22 C 0.12 5.22 3.29 46.31 0.15 5.37 16 23 C -0.11 -4.63 6.39 31.69 0.20 -4.43 16 24 C -0.11 -3.48 6.80 31.32 0.21 -3.27 16 25 C -0.11 -3.08 6.80 31.32 0.21 -2.87 16 26 C -0.12 -4.23 6.36 31.67 0.20 -4.03 16 27 H 0.27 13.68 8.31 -92.71 -0.77 12.91 16 28 H 0.37 14.69 8.70 -74.06 -0.64 14.05 16 29 H 0.07 2.63 8.09 -2.38 -0.02 2.62 16 30 H 0.09 3.75 6.37 -2.39 -0.02 3.73 16 31 H 0.11 3.97 4.37 -2.91 -0.01 3.95 16 32 H 0.13 3.31 8.06 -2.91 -0.02 3.29 16 33 H 0.15 2.68 8.06 -2.91 -0.02 2.65 16 34 H 0.15 2.81 8.06 -2.91 -0.02 2.78 16 35 H 0.13 3.55 8.06 -2.91 -0.02 3.53 16 36 H 0.06 2.75 7.00 -2.39 -0.02 2.74 16 37 H 0.06 2.75 7.25 -2.38 -0.02 2.74 16 38 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 39 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.07 1.81 8.14 -2.39 -0.02 1.80 16 42 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 44 H 0.07 2.56 6.65 -2.39 -0.02 2.54 16 Total: -1.00 -62.72 346.13 3.11 -59.61 By element: Atomic # 1 Polarization: 50.52 SS G_CDS: 0.30 Total: 50.82 kcal Atomic # 6 Polarization: -20.60 SS G_CDS: 3.55 Total: -17.05 kcal Atomic # 7 Polarization: -67.92 SS G_CDS: -1.21 Total: -69.13 kcal Atomic # 8 Polarization: -61.68 SS G_CDS: -1.39 Total: -63.07 kcal Atomic # 14 Polarization: 36.96 SS G_CDS: 1.86 Total: 38.82 kcal Total: -62.72 3.11 -59.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356152679.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.240 kcal (2) G-P(sol) polarization free energy of solvation -62.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds