Wall clock time and date at job start Tue Mar 31 2020 08:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86791 * 120.00164 * 2 1 4 4 H 1.48503 * 109.47275 * 274.69733 * 3 2 1 5 5 H 1.48503 * 109.47324 * 34.69597 * 3 2 1 6 6 H 1.48496 * 109.47510 * 154.69922 * 3 2 1 7 7 C 1.37881 * 119.99733 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00028 * 5.66456 * 7 2 1 9 9 C 1.50699 * 119.99775 * 185.65819 * 7 2 1 10 10 H 1.08997 * 109.47469 * 335.13065 * 9 7 2 11 11 C 1.52996 * 109.47134 * 215.12678 * 9 7 2 12 12 C 1.50702 * 109.47076 * 66.06393 * 11 9 7 13 13 O 1.21278 * 120.00092 * 5.63858 * 12 11 9 14 14 N 1.34779 * 119.99653 * 185.64396 * 12 11 9 15 15 C 1.46493 * 120.00393 * 356.32542 * 14 12 11 16 16 C 1.53001 * 109.47061 * 90.00269 * 15 14 12 17 17 O 1.42898 * 109.47138 * 64.99879 * 16 15 14 18 18 C 1.46503 * 119.99521 * 176.33000 * 14 12 11 19 19 C 1.52996 * 117.49890 * 16.91151 * 18 14 12 20 20 C 1.53000 * 117.49671 * 308.24825 * 18 14 12 21 21 C 1.50704 * 109.46670 * 95.13000 * 9 7 2 22 22 C 1.38239 * 120.00273 * 63.62870 * 21 9 7 23 23 C 1.38231 * 119.99767 * 179.80632 * 22 21 9 24 24 C 1.38230 * 120.00228 * 0.39872 * 23 22 21 25 25 C 1.38236 * 120.00357 * 359.85306 * 24 23 22 26 26 C 1.38237 * 119.99580 * 359.95757 * 25 24 23 27 27 H 0.97002 * 119.99665 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47656 * 306.05990 * 11 9 7 29 29 H 1.08999 * 109.46969 * 186.06198 * 11 9 7 30 30 H 1.09001 * 109.47413 * 330.00629 * 15 14 12 31 31 H 1.09004 * 109.47591 * 209.99997 * 15 14 12 32 32 H 1.09006 * 109.47051 * 304.99957 * 16 15 14 33 33 H 1.08998 * 109.47438 * 185.00284 * 16 15 14 34 34 H 0.96704 * 113.99871 * 179.97438 * 17 16 15 35 35 H 1.08999 * 115.55078 * 162.58209 * 18 14 12 36 36 H 1.08996 * 117.50121 * 359.97438 * 19 18 14 37 37 H 1.09001 * 117.49667 * 145.02642 * 19 18 14 38 38 H 1.08999 * 117.49824 * 214.97575 * 20 18 14 39 39 H 1.08997 * 117.50398 * 359.97438 * 20 18 14 40 40 H 1.07994 * 119.99472 * 359.97438 * 22 21 9 41 41 H 1.08000 * 119.99643 * 180.22731 * 23 22 21 42 42 H 1.08005 * 120.00280 * 179.82877 * 24 23 22 43 43 H 1.07995 * 120.00686 * 179.97438 * 25 24 23 44 44 H 1.08001 * 120.00216 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.3974 2.1037 -1.3954 5 1 1.4998 2.6219 0.7970 6 1 3.5929 1.4135 0.5983 7 6 2.0045 -1.1941 -0.0005 8 1 1.4684 -2.1271 -0.0933 9 6 3.5060 -1.1974 0.1281 10 1 3.9030 -0.2455 -0.2245 11 6 4.0875 -2.3355 -0.7129 12 6 3.8358 -2.0603 -2.1731 13 8 3.3413 -1.0071 -2.5152 14 7 4.1601 -2.9848 -3.0986 15 6 4.8306 -4.2228 -2.6939 16 6 3.7816 -5.2881 -2.3689 17 8 3.0572 -5.6208 -3.5549 18 6 3.8422 -2.7515 -4.5096 19 6 3.5165 -1.3177 -4.9326 20 6 2.4026 -2.3649 -4.8548 21 6 3.8858 -1.3957 1.5730 22 6 3.5559 -2.5724 2.2192 23 6 3.9079 -2.7559 3.5433 24 6 4.5825 -1.7594 4.2236 25 6 4.9078 -0.5806 3.5790 26 6 4.5593 -0.3987 2.2537 27 1 -0.4850 0.8401 0.0004 28 1 3.6106 -3.2747 -0.4327 29 1 5.1607 -2.4061 -0.5362 30 1 5.4415 -4.0334 -1.8112 31 1 5.4658 -4.5746 -3.5068 32 1 3.0919 -4.9019 -1.6182 33 1 4.2763 -6.1795 -1.9832 34 1 2.3740 -6.2924 -3.4231 35 1 4.3801 -3.3766 -5.2223 36 1 3.5383 -0.5481 -4.1611 37 1 3.8397 -0.9997 -5.9238 38 1 1.9937 -2.7353 -5.7948 39 1 1.6920 -2.2846 -4.0323 40 1 3.0256 -3.3493 1.6886 41 1 3.6534 -3.6767 4.0470 42 1 4.8550 -1.9017 5.2590 43 1 5.4345 0.1980 4.1106 44 1 4.8131 0.5224 1.7501 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356387639.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:10:52 Heat of formation + Delta-G solvation = -15.146810 kcal Electronic energy + Delta-G solvation = -25758.836266 eV Core-core repulsion = 22256.797350 eV Total energy + Delta-G solvation = -3502.038916 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.93362 -38.56093 -36.92656 -35.93063 -34.17905 -33.71164 -31.64036 -30.23295 -28.96287 -28.58820 -26.08787 -23.18141 -22.60139 -22.09099 -21.85278 -21.66512 -19.59423 -18.32244 -17.52442 -16.99354 -16.62541 -16.16241 -15.42766 -15.18801 -14.73764 -14.32316 -14.09239 -13.94693 -13.80773 -13.52640 -13.01680 -12.80542 -12.59092 -12.42086 -12.39325 -12.19472 -12.05119 -11.86231 -11.41915 -11.12036 -10.84166 -10.77643 -10.62308 -10.52598 -10.33977 -9.99224 -9.88699 -9.81403 -9.49464 -9.16309 -8.49721 -8.40276 -8.22796 -7.91666 -7.81026 -6.00220 -3.97530 2.08406 2.14171 3.27105 3.39215 3.41699 3.47563 3.52888 4.24173 4.49023 4.51322 4.57036 4.96043 5.14220 5.22243 5.29339 5.37534 5.37836 5.51314 5.52591 5.57822 5.59590 5.66417 5.68020 5.81074 5.90135 5.97617 6.02081 6.08687 6.20783 6.22088 6.32077 6.54604 6.57896 6.70197 6.81742 6.88534 7.02088 7.13213 7.23895 7.29093 7.57641 7.63595 7.70464 7.80506 7.94407 8.50802 8.98197 9.00620 9.64806 11.12376 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.012743 B = 0.006129 C = 0.004801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2196.707245 B = 4567.463603 C = 5830.218958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.085 3.915 3 Si 0.875 3.125 4 H -0.275 1.275 5 H -0.296 1.296 6 H -0.257 1.257 7 C -0.489 4.489 8 H 0.069 0.931 9 C 0.053 3.947 10 H 0.055 0.945 11 C -0.119 4.119 12 C 0.521 3.479 13 O -0.496 6.496 14 N -0.593 5.593 15 C 0.118 3.882 16 C 0.054 3.946 17 O -0.565 6.565 18 C 0.088 3.912 19 C -0.207 4.207 20 C -0.182 4.182 21 C -0.035 4.035 22 C -0.109 4.109 23 C -0.125 4.125 24 C -0.151 4.151 25 C -0.124 4.124 26 C -0.138 4.138 27 H 0.262 0.738 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.054 0.946 33 H 0.050 0.950 34 H 0.375 0.625 35 H 0.115 0.885 36 H 0.147 0.853 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.098 0.902 40 H 0.115 0.885 41 H 0.109 0.891 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.300 -10.130 -2.228 15.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.117 4.117 3 Si 0.704 3.296 4 H -0.201 1.201 5 H -0.223 1.223 6 H -0.182 1.182 7 C -0.525 4.525 8 H 0.087 0.913 9 C 0.034 3.966 10 H 0.073 0.927 11 C -0.159 4.159 12 C 0.310 3.690 13 O -0.369 6.369 14 N -0.327 5.327 15 C -0.006 4.006 16 C -0.026 4.026 17 O -0.369 6.369 18 C -0.016 4.016 19 C -0.244 4.244 20 C -0.221 4.221 21 C -0.035 4.035 22 C -0.127 4.127 23 C -0.144 4.144 24 C -0.169 4.169 25 C -0.142 4.142 26 C -0.156 4.156 27 H 0.072 0.928 28 H 0.099 0.901 29 H 0.086 0.914 30 H 0.111 0.889 31 H 0.098 0.902 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.221 0.779 35 H 0.133 0.867 36 H 0.164 0.836 37 H 0.095 0.905 38 H 0.103 0.897 39 H 0.116 0.884 40 H 0.133 0.867 41 H 0.127 0.873 42 H 0.125 0.875 43 H 0.126 0.874 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 11.267 -8.972 -2.657 14.646 hybrid contribution -0.260 0.264 0.335 0.500 sum 11.008 -8.709 -2.322 14.227 Atomic orbital electron populations 1.69906 1.06457 1.26865 1.50207 1.24907 0.94486 0.98963 0.93390 0.86903 0.80573 0.83797 0.78333 1.20095 1.22329 1.18186 1.20569 0.87648 0.94401 1.49920 0.91292 1.18201 0.97750 0.94573 0.86086 0.92709 1.21800 1.00149 1.02435 0.91503 1.20851 0.77068 0.83179 0.87884 1.90467 1.40952 1.25236 1.80244 1.47338 1.60705 1.18714 1.05943 1.21540 0.93728 0.83759 1.01574 1.22756 0.94896 0.97086 0.87814 1.86512 1.53456 1.63224 1.33726 1.21359 0.98652 0.98890 0.82721 1.24152 1.02379 0.94833 1.03030 1.23123 0.92642 1.03761 1.02543 1.20735 0.91343 0.92345 0.99106 1.20906 0.99535 0.98089 0.94180 1.21020 0.99637 0.98661 0.95036 1.20849 1.02185 0.94789 0.99113 1.20982 1.00960 0.97206 0.95043 1.21222 1.00263 0.99419 0.94717 0.92845 0.90081 0.91355 0.88870 0.90191 0.92755 0.93208 0.77850 0.86717 0.83605 0.90483 0.89679 0.88376 0.86656 0.87270 0.87451 0.87371 0.86728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.87 13.96 55.43 0.77 -27.10 16 2 C 0.09 2.48 5.47 -17.82 -0.10 2.38 16 3 Si 0.88 22.67 27.33 -169.99 -4.65 18.02 16 4 H -0.28 -7.33 7.11 56.52 0.40 -6.93 16 5 H -0.30 -7.72 7.11 56.52 0.40 -7.31 16 6 H -0.26 -6.09 4.22 56.52 0.24 -5.86 16 7 C -0.49 -13.23 7.38 -34.44 -0.25 -13.49 16 8 H 0.07 2.03 8.06 -52.48 -0.42 1.61 16 9 C 0.05 1.19 1.27 -92.92 -0.12 1.08 16 10 H 0.05 1.32 4.46 -51.93 -0.23 1.09 16 11 C -0.12 -2.17 3.36 -27.88 -0.09 -2.27 16 12 C 0.52 10.20 7.13 -10.98 -0.08 10.13 16 13 O -0.50 -11.72 11.04 5.56 0.06 -11.66 16 14 N -0.59 -9.46 2.80 -166.11 -0.47 -9.93 16 15 C 0.12 1.38 5.59 -4.04 -0.02 1.36 16 16 C 0.05 0.60 7.31 37.16 0.27 0.87 16 17 O -0.56 -6.75 13.22 -35.23 -0.47 -7.22 16 18 C 0.09 1.39 6.22 -67.93 -0.42 0.97 16 19 C -0.21 -3.56 9.64 -26.69 -0.26 -3.82 16 20 C -0.18 -3.15 9.91 -26.69 -0.26 -3.41 16 21 C -0.03 -0.72 4.77 -104.62 -0.50 -1.21 16 22 C -0.11 -2.05 8.93 -39.58 -0.35 -2.40 16 23 C -0.13 -2.08 10.05 -39.59 -0.40 -2.47 16 24 C -0.15 -2.42 10.05 -39.58 -0.40 -2.82 16 25 C -0.12 -2.11 10.05 -39.58 -0.40 -2.51 16 26 C -0.14 -2.72 9.31 -39.58 -0.37 -3.09 16 27 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 28 H 0.08 1.38 6.06 -51.93 -0.31 1.07 16 29 H 0.07 1.06 7.58 -51.93 -0.39 0.66 16 30 H 0.09 0.94 6.62 -51.93 -0.34 0.59 16 31 H 0.08 0.81 8.03 -51.93 -0.42 0.39 16 32 H 0.05 0.70 6.98 -51.93 -0.36 0.34 16 33 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.38 3.03 9.12 45.56 0.42 3.44 16 35 H 0.12 1.54 8.09 -51.93 -0.42 1.12 16 36 H 0.15 3.04 4.95 -53.46 -0.26 2.78 16 37 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.10 2.07 7.84 -51.93 -0.41 1.66 16 40 H 0.12 2.09 7.45 -52.49 -0.39 1.70 16 41 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 42 H 0.11 1.41 8.06 -52.48 -0.42 0.99 16 43 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 44 H 0.11 2.26 6.28 -52.49 -0.33 1.93 16 LS Contribution 351.63 15.07 5.30 5.30 Total: -1.00 -33.91 351.63 -8.91 -42.82 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -5.72 Total: 10.47 kcal Atomic # 6 Polarization: -16.96 SS G_CDS: -3.75 Total: -20.71 kcal Atomic # 7 Polarization: -37.34 SS G_CDS: 0.31 Total: -37.03 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -0.40 Total: -18.87 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -4.65 Total: 18.02 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.91 -8.91 -42.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356387639.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.671 kcal (2) G-P(sol) polarization free energy of solvation -33.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds