Wall clock time and date at job start Tue Mar 31 2020 08:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86806 * 120.00077 * 2 1 4 4 H 1.48495 * 109.47145 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47204 * 300.00316 * 3 2 1 6 6 H 1.48500 * 109.46839 * 60.00245 * 3 2 1 7 7 C 1.37876 * 120.00420 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00608 * 184.87076 * 7 2 1 9 9 C 1.50704 * 119.99441 * 4.86982 * 7 2 1 10 10 H 1.08998 * 109.46926 * 174.67372 * 9 7 2 11 11 C 1.53005 * 109.47103 * 54.68521 * 9 7 2 12 12 C 1.50696 * 109.47348 * 64.99377 * 11 9 7 13 13 O 1.21283 * 120.00194 * 0.02562 * 12 11 9 14 14 N 1.34780 * 119.99747 * 180.02562 * 12 11 9 15 15 C 1.47423 * 125.65048 * 0.02562 * 14 12 11 16 16 C 1.54904 * 104.83303 * 204.09360 * 15 14 12 17 17 C 1.55163 * 101.58282 * 322.98814 * 16 15 14 18 18 C 1.47024 * 125.64559 * 179.72086 * 14 12 11 19 19 H 1.08996 * 109.88601 * 59.55597 * 18 14 12 20 20 C 1.53008 * 109.87841 * 298.39251 * 18 14 12 21 21 O 1.42901 * 109.47151 * 295.00026 * 20 18 14 22 22 C 1.50691 * 109.47432 * 294.68055 * 9 7 2 23 23 C 1.38235 * 120.00272 * 271.48699 * 22 9 7 24 24 C 1.38236 * 120.00265 * 179.78631 * 23 22 9 25 25 C 1.38237 * 119.99847 * 0.44436 * 24 23 22 26 26 C 1.38232 * 119.99775 * 359.80567 * 25 24 23 27 27 C 1.38233 * 120.00405 * 359.97438 * 26 25 24 28 28 H 0.97003 * 120.00078 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.46617 * 304.99363 * 11 9 7 30 30 H 1.08993 * 109.46957 * 185.00170 * 11 9 7 31 31 H 1.08994 * 110.36636 * 322.93496 * 15 14 12 32 32 H 1.09006 * 110.36453 * 85.14646 * 15 14 12 33 33 H 1.08998 * 111.00859 * 81.06559 * 16 15 14 34 34 H 1.09006 * 111.00556 * 204.88359 * 16 15 14 35 35 H 1.09001 * 110.72230 * 153.86206 * 17 16 15 36 36 H 1.08989 * 110.72325 * 276.96731 * 17 16 15 37 37 H 1.08995 * 109.47167 * 55.00461 * 20 18 14 38 38 H 1.09005 * 109.46613 * 174.99827 * 20 18 14 39 39 H 0.96697 * 113.99514 * 180.02562 * 21 20 18 40 40 H 1.07999 * 119.99781 * 359.97438 * 23 22 9 41 41 H 1.07998 * 120.00065 * 180.27445 * 24 23 22 42 42 H 1.07993 * 119.99766 * 179.83565 * 25 24 23 43 43 H 1.08006 * 119.99731 * 180.02562 * 26 25 24 44 44 H 1.08001 * 120.00156 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0816 -1.1958 0.0789 9 6 1.2551 -2.4967 -0.1119 10 1 1.9659 -3.3192 -0.1906 11 6 0.3671 -2.4693 -1.3576 12 6 1.2321 -2.4003 -2.5897 13 8 2.4399 -2.3759 -2.4822 14 7 0.6634 -2.3657 -3.8112 15 6 -0.7848 -2.3887 -4.0857 16 6 -0.9067 -2.9470 -5.5255 17 6 0.3268 -2.3051 -6.2140 18 6 1.3846 -2.2924 -5.0903 19 1 2.0437 -3.1543 -5.1943 20 6 2.2002 -0.9994 -5.1544 21 8 1.3149 0.1224 -5.1599 22 6 0.3975 -2.6892 1.1121 23 6 0.9176 -3.3165 2.2288 24 6 0.1323 -3.4892 3.3532 25 6 -1.1760 -3.0426 3.3578 26 6 -1.6976 -2.4199 2.2394 27 6 -0.9109 -2.2432 1.1165 28 1 -0.4850 0.8401 0.0004 29 1 -0.2834 -1.5955 -1.3209 30 1 -0.2406 -3.3735 -1.3905 31 1 -1.2943 -3.0447 -3.3800 32 1 -1.1972 -1.3811 -4.0316 33 1 -0.8349 -4.0346 -5.5302 34 1 -1.8331 -2.6167 -5.9955 35 1 0.6603 -2.9147 -7.0538 36 1 0.1011 -1.2904 -6.5414 37 1 2.8563 -0.9402 -4.2860 38 1 2.8004 -0.9932 -6.0643 39 1 1.7643 0.9777 -5.1998 40 1 1.9384 -3.6691 2.2237 41 1 0.5399 -3.9753 4.2272 42 1 -1.7903 -3.1798 4.2353 43 1 -2.7196 -2.0706 2.2431 44 1 -1.3186 -1.7570 0.2426 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356527366.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:50 Heat of formation + Delta-G solvation = -55.481676 kcal Electronic energy + Delta-G solvation = -25920.250469 eV Core-core repulsion = 22416.462502 eV Total energy + Delta-G solvation = -3503.787967 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.64412 -38.26883 -36.99365 -35.75639 -34.15281 -31.31664 -30.91785 -30.08697 -29.76155 -28.19841 -25.81158 -24.96772 -22.92969 -21.99338 -21.36214 -20.66167 -19.51729 -18.19254 -17.30718 -16.48064 -15.97910 -15.90293 -15.41837 -14.85664 -14.54488 -14.18923 -13.87358 -13.79127 -13.39497 -13.11995 -12.96773 -12.80175 -12.57616 -12.20643 -12.09160 -11.91034 -11.52341 -11.38182 -11.29650 -11.04301 -10.88560 -10.73506 -10.64247 -10.55592 -10.36716 -10.13180 -9.90145 -9.73657 -9.24693 -9.11529 -8.68303 -8.34953 -7.96457 -7.77224 -7.40320 -5.93067 -4.02325 2.52950 2.61629 3.31144 3.38869 3.45422 3.62536 3.78192 4.45336 4.46733 4.78034 4.86743 5.00916 5.06925 5.29972 5.39573 5.48398 5.57629 5.74625 5.78776 5.84040 5.89503 5.95496 5.98458 6.01679 6.05826 6.17261 6.21951 6.42364 6.43743 6.49537 6.64540 6.74023 6.81243 6.96954 7.18087 7.23407 7.30904 7.52049 7.58664 7.73251 7.87075 7.97647 8.12441 8.21802 8.33617 8.39874 8.93858 9.25302 9.60500 11.01238 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.014591 B = 0.005648 C = 0.004685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.494087 B = 4956.381096 C = 5975.000144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.061 3.939 3 Si 0.890 3.110 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.287 1.287 7 C -0.469 4.469 8 H 0.058 0.942 9 C 0.087 3.913 10 H 0.036 0.964 11 C -0.132 4.132 12 C 0.543 3.457 13 O -0.530 6.530 14 N -0.621 5.621 15 C 0.109 3.891 16 C -0.132 4.132 17 C -0.125 4.125 18 C 0.141 3.859 19 H 0.078 0.922 20 C 0.062 3.938 21 O -0.564 6.564 22 C -0.027 4.027 23 C -0.132 4.132 24 C -0.142 4.142 25 C -0.154 4.154 26 C -0.143 4.143 27 C -0.068 4.068 28 H 0.259 0.741 29 H 0.133 0.867 30 H 0.050 0.950 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.065 0.935 38 H 0.042 0.958 39 H 0.373 0.627 40 H 0.105 0.895 41 H 0.101 0.899 42 H 0.099 0.901 43 H 0.101 0.899 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.816 -4.440 -9.249 10.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.213 1.213 7 C -0.507 4.507 8 H 0.077 0.923 9 C 0.068 3.932 10 H 0.054 0.946 11 C -0.172 4.172 12 C 0.335 3.665 13 O -0.405 6.405 14 N -0.359 5.359 15 C -0.014 4.014 16 C -0.170 4.170 17 C -0.163 4.163 18 C 0.037 3.963 19 H 0.096 0.904 20 C -0.017 4.017 21 O -0.368 6.368 22 C -0.027 4.027 23 C -0.150 4.150 24 C -0.160 4.160 25 C -0.173 4.173 26 C -0.161 4.161 27 C -0.086 4.086 28 H 0.070 0.930 29 H 0.150 0.850 30 H 0.068 0.932 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.103 0.897 37 H 0.084 0.916 38 H 0.060 0.940 39 H 0.219 0.781 40 H 0.123 0.877 41 H 0.119 0.881 42 H 0.117 0.883 43 H 0.119 0.881 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -3.679 -4.771 -9.048 10.870 hybrid contribution 0.884 1.670 0.109 1.892 sum -2.795 -3.101 -8.939 9.866 Atomic orbital electron populations 1.69675 1.05564 1.25955 1.51486 1.24867 0.94886 0.98872 0.95230 0.86539 0.80354 0.83948 0.77269 1.19948 1.21166 1.21323 1.20985 0.93131 0.89393 1.47164 0.92347 1.17647 0.91756 0.96934 0.86844 0.94555 1.21908 0.99710 1.03283 0.92286 1.20870 0.89077 0.73855 0.82734 1.90585 1.15176 1.49080 1.85682 1.48652 1.06537 1.75819 1.04871 1.22136 0.82631 1.00960 0.95705 1.22746 0.98342 1.00289 0.95648 1.22603 0.94935 1.02201 0.96576 1.21482 0.94328 0.95615 0.84910 0.90424 1.22539 0.92219 0.86714 1.00190 1.86455 1.36544 1.16247 1.97596 1.20345 0.93562 0.91985 0.96826 1.20891 0.98879 1.01448 0.93791 1.20792 0.94728 1.02746 0.97727 1.20757 0.95798 1.02721 0.97984 1.21043 0.99201 1.01188 0.94699 1.21360 0.93545 0.95062 0.98683 0.93041 0.85013 0.93213 0.90940 0.91539 0.91098 0.90371 0.91043 0.89652 0.91648 0.94030 0.78078 0.87700 0.88127 0.88329 0.88105 0.84313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.08 7.99 55.43 0.44 -22.64 16 2 C 0.06 1.64 5.12 -17.82 -0.09 1.55 16 3 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 4 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.47 -12.80 7.27 -34.44 -0.25 -13.05 16 8 H 0.06 1.68 7.82 -52.49 -0.41 1.27 16 9 C 0.09 2.15 1.97 -92.92 -0.18 1.96 16 10 H 0.04 0.91 7.91 -51.93 -0.41 0.50 16 11 C -0.13 -2.94 3.08 -27.88 -0.09 -3.02 16 12 C 0.54 12.04 7.38 -10.99 -0.08 11.96 16 13 O -0.53 -13.35 13.96 5.56 0.08 -13.27 16 14 N -0.62 -11.24 3.02 -163.01 -0.49 -11.73 16 15 C 0.11 1.62 6.69 -2.53 -0.02 1.60 16 16 C -0.13 -1.49 7.09 -24.58 -0.17 -1.66 16 17 C -0.13 -1.49 6.37 -24.89 -0.16 -1.65 16 18 C 0.14 2.17 3.26 -66.94 -0.22 1.96 16 19 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 20 C 0.06 0.98 6.70 37.16 0.25 1.23 16 21 O -0.56 -8.96 12.42 -35.23 -0.44 -9.40 16 22 C -0.03 -0.62 4.69 -104.63 -0.49 -1.11 16 23 C -0.13 -2.87 9.71 -39.58 -0.38 -3.25 16 24 C -0.14 -2.77 10.05 -39.58 -0.40 -3.17 16 25 C -0.15 -2.95 10.05 -39.58 -0.40 -3.35 16 26 C -0.14 -2.88 10.05 -39.59 -0.40 -3.28 16 27 C -0.07 -1.52 7.45 -39.58 -0.30 -1.82 16 28 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 29 H 0.13 3.14 4.70 -51.93 -0.24 2.89 16 30 H 0.05 1.00 7.85 -51.93 -0.41 0.59 16 31 H 0.07 1.01 7.48 -51.93 -0.39 0.63 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.08 1.07 6.96 -51.94 -0.36 0.71 16 37 H 0.07 1.26 6.72 -51.93 -0.35 0.91 16 38 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.37 4.56 9.12 45.56 0.42 4.97 16 40 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 41 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 42 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 43 H 0.10 1.79 8.06 -52.48 -0.42 1.37 16 44 H 0.14 3.19 5.18 -52.49 -0.27 2.91 16 LS Contribution 348.29 15.07 5.25 5.25 Total: -1.00 -30.79 348.29 -9.35 -40.13 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -5.79 Total: 9.98 kcal Atomic # 6 Polarization: -11.73 SS G_CDS: -3.37 Total: -15.10 kcal Atomic # 7 Polarization: -34.32 SS G_CDS: -0.05 Total: -34.37 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: -0.36 Total: -22.67 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.79 -9.35 -40.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356527366.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.349 kcal (2) G-P(sol) polarization free energy of solvation -30.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds