Wall clock time and date at job start Tue Mar 31 2020 08:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99763 * 2 1 4 4 H 1.48508 * 109.46986 * 269.99916 * 3 2 1 5 5 H 1.48493 * 109.47384 * 30.00463 * 3 2 1 6 6 H 1.48501 * 109.46846 * 150.00639 * 3 2 1 7 7 C 1.37873 * 119.99870 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99775 * 184.15109 * 7 2 1 9 9 C 1.50697 * 120.00129 * 4.14238 * 7 2 1 10 10 H 1.09001 * 109.47112 * 174.69101 * 9 7 2 11 11 C 1.52998 * 109.46807 * 54.69865 * 9 7 2 12 12 C 1.50697 * 109.47484 * 65.00142 * 11 9 7 13 13 O 1.21283 * 119.99888 * 359.97438 * 12 11 9 14 14 N 1.34779 * 120.00132 * 180.02562 * 12 11 9 15 15 C 1.47019 * 125.64786 * 0.02562 * 14 12 11 16 16 C 1.54325 * 107.27182 * 178.90926 * 15 14 12 17 17 C 1.55150 * 102.94273 * 337.81283 * 16 15 14 18 18 H 1.09005 * 111.00398 * 277.38830 * 17 16 15 19 19 C 1.52997 * 111.00838 * 153.57463 * 17 16 15 20 20 O 1.42900 * 109.47098 * 66.44864 * 19 17 16 21 21 C 1.47426 * 125.64888 * 179.71855 * 14 12 11 22 22 C 1.50696 * 109.47569 * 294.69388 * 9 7 2 23 23 C 1.38237 * 120.00334 * 271.84998 * 22 9 7 24 24 C 1.38230 * 120.00122 * 180.27532 * 23 22 9 25 25 C 1.38239 * 119.99844 * 359.47094 * 24 23 22 26 26 C 1.38234 * 120.00129 * 0.25360 * 25 24 23 27 27 C 1.38234 * 119.99780 * 0.02562 * 26 25 24 28 28 H 0.97004 * 120.00250 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.46863 * 184.99639 * 11 9 7 30 30 H 1.08995 * 109.47065 * 304.99273 * 11 9 7 31 31 H 1.09001 * 109.88533 * 298.33225 * 15 14 12 32 32 H 1.09000 * 109.88303 * 59.49685 * 15 14 12 33 33 H 1.09002 * 110.71553 * 96.17342 * 16 15 14 34 34 H 1.09001 * 110.72131 * 219.26598 * 16 15 14 35 35 H 1.09002 * 109.47595 * 186.45401 * 19 17 16 36 36 H 1.09002 * 109.46778 * 306.45233 * 19 17 16 37 37 H 0.96705 * 114.00051 * 179.97438 * 20 19 17 38 38 H 1.09004 * 110.36037 * 322.99346 * 21 14 12 39 39 H 1.08993 * 110.37130 * 85.31858 * 21 14 12 40 40 H 1.07998 * 120.00041 * 0.02562 * 23 22 9 41 41 H 1.08002 * 120.00505 * 179.74265 * 24 23 22 42 42 H 1.07998 * 120.00221 * 180.27520 * 25 24 23 43 43 H 1.08002 * 120.00157 * 180.02562 * 26 25 24 44 44 H 1.08004 * 120.00219 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0824 -1.1953 0.0672 9 6 1.2540 -2.4974 -0.0954 10 1 1.9640 -3.3204 -0.1764 11 6 0.3527 -2.4780 -1.3316 12 6 1.2043 -2.4171 -2.5733 13 8 2.4132 -2.3913 -2.4789 14 7 0.6226 -2.3903 -3.7888 15 6 -0.8246 -2.4148 -4.0469 16 6 -1.0187 -2.3408 -5.5761 17 6 0.3113 -1.7088 -6.0650 18 1 0.2865 -0.6233 -5.9689 19 6 0.6178 -2.1220 -7.5058 20 8 -0.3597 -1.5569 -8.3817 21 6 1.3319 -2.3253 -5.0796 22 6 0.4096 -2.6819 1.1391 23 6 0.9440 -3.2954 2.2567 24 6 0.1677 -3.4697 3.3871 25 6 -1.1396 -3.0209 3.4037 26 6 -1.6723 -2.4023 2.2881 27 6 -0.8978 -2.2331 1.1557 28 1 -0.4851 0.8401 0.0004 29 1 -0.2554 -3.3824 -1.3521 30 1 -0.2974 -1.6039 -1.2935 31 1 -1.2540 -3.3402 -3.6630 32 1 -1.3006 -1.5575 -3.5710 33 1 -1.1494 -3.3378 -5.9968 34 1 -1.8668 -1.7037 -5.8268 35 1 1.6077 -1.7607 -7.7847 36 1 0.5920 -3.2088 -7.5854 37 1 -0.2272 -1.7776 -9.3138 38 1 2.2124 -1.6881 -4.9968 39 1 1.6156 -3.3252 -5.4075 40 1 1.9668 -3.6420 2.2453 41 1 0.5839 -3.9527 4.2589 42 1 -1.7448 -3.1531 4.2884 43 1 -2.6936 -2.0513 2.3012 44 1 -1.3138 -1.7495 0.2842 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356540671.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:16 Heat of formation + Delta-G solvation = -58.800407 kcal Electronic energy + Delta-G solvation = -25176.738042 eV Core-core repulsion = 21672.806164 eV Total energy + Delta-G solvation = -3503.931878 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.58031 -38.32314 -37.46721 -36.14638 -34.17933 -31.82268 -31.01290 -29.80677 -29.30873 -28.42699 -26.34094 -24.87306 -22.94624 -22.23293 -21.33851 -20.35633 -19.75781 -18.41995 -17.51665 -16.63727 -16.19730 -16.03731 -15.49049 -15.00663 -14.75366 -14.30057 -13.96259 -13.85780 -13.48546 -13.45405 -13.12636 -12.94228 -12.45318 -12.34191 -12.15871 -11.84012 -11.58018 -11.44087 -11.32086 -11.11832 -10.98049 -10.87600 -10.77629 -10.65639 -10.38008 -10.15117 -10.12833 -9.92069 -9.27952 -9.15890 -8.77400 -8.39882 -8.05467 -7.78687 -7.42060 -5.95717 -4.05215 2.51437 2.59969 3.32890 3.38440 3.43920 3.51619 3.70978 4.03047 4.45301 4.61289 4.68973 4.96761 4.99203 5.22338 5.25293 5.27359 5.38578 5.48479 5.62025 5.74873 5.82896 5.88188 5.92374 5.97584 6.02604 6.06403 6.16588 6.28973 6.40860 6.47110 6.61224 6.71311 6.79660 6.86639 7.16164 7.19659 7.28804 7.40564 7.49619 7.56566 7.71272 7.95715 8.09647 8.20023 8.25390 8.37062 8.91362 9.18634 9.57989 10.98636 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.015682 B = 0.004364 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.063609 B = 6413.857659 C = 7243.814314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.060 3.940 3 Si 0.892 3.108 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.469 4.469 8 H 0.059 0.941 9 C 0.087 3.913 10 H 0.037 0.963 11 C -0.132 4.132 12 C 0.541 3.459 13 O -0.526 6.526 14 N -0.633 5.633 15 C 0.104 3.896 16 C -0.118 4.118 17 C -0.105 4.105 18 H 0.090 0.910 19 C 0.089 3.911 20 O -0.572 6.572 21 C 0.116 3.884 22 C -0.027 4.027 23 C -0.131 4.131 24 C -0.142 4.142 25 C -0.154 4.154 26 C -0.143 4.143 27 C -0.069 4.069 28 H 0.260 0.740 29 H 0.051 0.949 30 H 0.134 0.866 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.048 0.952 36 H 0.048 0.952 37 H 0.378 0.622 38 H 0.075 0.925 39 H 0.059 0.941 40 H 0.105 0.895 41 H 0.101 0.899 42 H 0.099 0.901 43 H 0.101 0.899 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.834 -5.801 -10.803 13.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.720 3.280 4 H -0.209 1.209 5 H -0.214 1.214 6 H -0.200 1.200 7 C -0.507 4.507 8 H 0.077 0.923 9 C 0.067 3.933 10 H 0.055 0.945 11 C -0.172 4.172 12 C 0.332 3.668 13 O -0.400 6.400 14 N -0.371 5.371 15 C -0.020 4.020 16 C -0.156 4.156 17 C -0.124 4.124 18 H 0.108 0.892 19 C 0.011 3.989 20 O -0.377 6.377 21 C -0.007 4.007 22 C -0.028 4.028 23 C -0.150 4.150 24 C -0.160 4.160 25 C -0.172 4.172 26 C -0.161 4.161 27 C -0.087 4.087 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.151 0.849 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.224 0.776 38 H 0.094 0.906 39 H 0.077 0.923 40 H 0.123 0.877 41 H 0.119 0.881 42 H 0.117 0.883 43 H 0.119 0.881 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -4.473 -5.408 -10.050 12.258 hybrid contribution 0.631 0.960 -0.411 1.220 sum -3.841 -4.448 -10.461 11.999 Atomic orbital electron populations 1.69657 1.05586 1.26107 1.51652 1.24877 0.94919 0.98943 0.95230 0.86575 0.80017 0.83452 0.77941 1.20913 1.21395 1.19984 1.20984 0.93146 0.89395 1.47152 0.92280 1.17652 0.91811 0.96971 0.86817 0.94479 1.21924 0.99825 1.03444 0.92030 1.20948 0.88996 0.73974 0.82858 1.90615 1.15010 1.48629 1.85780 1.48681 1.06556 1.76597 1.05289 1.21949 0.82580 1.01885 0.95591 1.22596 0.97590 1.01204 0.94205 1.22299 0.96065 1.01651 0.92415 0.89203 1.22048 0.90921 0.96560 0.89413 1.86488 1.53529 1.76937 1.20722 1.21868 0.95393 0.99971 0.83506 1.20341 0.93509 0.92127 0.96790 1.20896 0.98882 1.01465 0.93708 1.20797 0.94767 1.02723 0.97723 1.20766 0.95817 1.02671 0.97979 1.21048 0.99226 1.01225 0.94648 1.21374 0.93673 0.95079 0.98619 0.92950 0.93043 0.84896 0.91739 0.91214 0.91010 0.90051 0.93363 0.93349 0.77573 0.90615 0.92290 0.87652 0.88092 0.88301 0.88079 0.84253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.97 7.97 55.43 0.44 -22.53 16 2 C 0.06 1.60 5.13 -17.82 -0.09 1.50 16 3 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 4 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.47 -12.78 7.27 -34.44 -0.25 -13.03 16 8 H 0.06 1.70 7.82 -52.49 -0.41 1.29 16 9 C 0.09 2.12 1.97 -92.93 -0.18 1.94 16 10 H 0.04 0.93 7.91 -51.93 -0.41 0.51 16 11 C -0.13 -2.91 3.27 -27.89 -0.09 -3.01 16 12 C 0.54 11.97 7.60 -10.99 -0.08 11.89 16 13 O -0.53 -13.47 15.24 5.56 0.08 -13.38 16 14 N -0.63 -11.24 3.33 -170.67 -0.57 -11.81 16 15 C 0.10 1.47 6.49 -3.06 -0.02 1.45 16 16 C -0.12 -1.36 6.29 -24.90 -0.16 -1.52 16 17 C -0.11 -1.28 3.31 -88.60 -0.29 -1.57 16 18 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 19 C 0.09 0.84 6.48 37.16 0.24 1.08 16 20 O -0.57 -5.43 13.51 -35.23 -0.48 -5.91 16 21 C 0.12 1.72 6.37 -2.65 -0.02 1.71 16 22 C -0.03 -0.63 4.69 -104.62 -0.49 -1.12 16 23 C -0.13 -2.84 9.71 -39.58 -0.38 -3.23 16 24 C -0.14 -2.76 10.05 -39.58 -0.40 -3.16 16 25 C -0.15 -2.92 10.05 -39.58 -0.40 -3.32 16 26 C -0.14 -2.87 10.05 -39.58 -0.40 -3.26 16 27 C -0.07 -1.53 7.48 -39.58 -0.30 -1.83 16 28 H 0.26 6.58 8.31 -40.82 -0.34 6.24 16 29 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.13 3.10 4.68 -51.93 -0.24 2.86 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.07 0.73 8.01 -51.93 -0.42 0.32 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.05 0.40 8.11 -51.93 -0.42 -0.02 16 37 H 0.38 1.78 9.12 45.56 0.42 2.19 16 38 H 0.08 1.24 8.04 -51.93 -0.42 0.82 16 39 H 0.06 0.79 8.03 -51.93 -0.42 0.37 16 40 H 0.11 2.16 8.06 -52.49 -0.42 1.74 16 41 H 0.10 1.68 8.06 -52.49 -0.42 1.25 16 42 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 43 H 0.10 1.78 8.06 -52.49 -0.42 1.36 16 44 H 0.14 3.16 5.17 -52.48 -0.27 2.89 16 LS Contribution 353.38 15.07 5.33 5.33 Total: -1.00 -31.21 353.38 -9.48 -40.68 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -5.95 Total: 6.30 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: -3.31 Total: -15.47 kcal Atomic # 7 Polarization: -34.21 SS G_CDS: -0.13 Total: -34.34 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: -0.39 Total: -19.29 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.21 -9.48 -40.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356540671.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.118 kcal (2) G-P(sol) polarization free energy of solvation -31.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds