Wall clock time and date at job start Tue Mar 31 2020 08:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 119.99992 * 2 1 4 4 H 1.48501 * 109.46797 * 240.00218 * 3 2 1 5 5 H 1.48496 * 109.46918 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47170 * 120.00588 * 3 2 1 7 7 C 1.37878 * 120.00027 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99943 * 186.11489 * 7 2 1 9 9 C 1.50702 * 119.99980 * 6.11173 * 7 2 1 10 10 H 1.08999 * 109.46691 * 25.85464 * 9 7 2 11 11 C 1.52997 * 109.46750 * 145.84891 * 9 7 2 12 12 C 1.50701 * 109.47549 * 295.00173 * 11 9 7 13 13 O 1.21287 * 119.99585 * 359.97438 * 12 11 9 14 14 N 1.34771 * 120.00217 * 180.02562 * 12 11 9 15 15 C 1.47025 * 125.64957 * 0.03514 * 14 12 11 16 16 C 1.54331 * 107.27044 * 181.02896 * 15 14 12 17 17 C 1.55156 * 102.94392 * 22.19219 * 16 15 14 18 18 H 1.09006 * 111.03578 * 82.58474 * 17 16 15 19 19 C 1.52993 * 111.00433 * 206.42679 * 17 16 15 20 20 O 1.42910 * 109.46954 * 287.19443 * 19 17 16 21 21 C 1.47426 * 125.64950 * 179.97438 * 14 12 11 22 22 C 1.50692 * 109.47155 * 265.85039 * 9 7 2 23 23 C 1.38237 * 120.00219 * 303.46311 * 22 9 7 24 24 C 1.38230 * 120.00307 * 179.76708 * 23 22 9 25 25 C 1.38238 * 119.99752 * 0.50886 * 24 23 22 26 26 C 1.38240 * 120.00100 * 359.74859 * 25 24 23 27 27 C 1.38234 * 119.99803 * 359.97438 * 26 25 24 28 28 H 0.96997 * 119.99640 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.47062 * 175.00066 * 11 9 7 30 30 H 1.08996 * 109.47441 * 55.00292 * 11 9 7 31 31 H 1.08994 * 109.87907 * 300.44398 * 15 14 12 32 32 H 1.08997 * 109.87669 * 61.45738 * 15 14 12 33 33 H 1.09008 * 110.71574 * 263.83233 * 16 15 14 34 34 H 1.08992 * 110.71679 * 140.55864 * 16 15 14 35 35 H 1.08999 * 109.47680 * 47.19558 * 19 17 16 36 36 H 1.09001 * 109.47127 * 167.19907 * 19 17 16 37 37 H 0.96701 * 113.99611 * 180.02562 * 20 19 17 38 38 H 1.09002 * 110.36557 * 37.06247 * 21 14 12 39 39 H 1.08998 * 110.37098 * 274.74495 * 21 14 12 40 40 H 1.08005 * 119.99544 * 359.97438 * 23 22 9 41 41 H 1.07999 * 120.00487 * 180.22690 * 24 23 22 42 42 H 1.08005 * 120.00073 * 179.72159 * 25 24 23 43 43 H 1.07996 * 119.99930 * 179.97438 * 26 25 24 44 44 H 1.07994 * 120.00326 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0800 -1.1967 0.0991 9 6 1.2575 -2.4954 -0.1401 10 1 0.3201 -2.3213 -0.6683 11 6 2.1102 -3.4908 -0.9292 12 6 2.2984 -2.9862 -2.3367 13 8 1.7990 -1.9341 -2.6754 14 7 3.0205 -3.7044 -3.2192 15 6 3.6765 -4.9911 -2.9438 16 6 4.4030 -5.4208 -4.2359 17 6 4.5867 -4.0795 -4.9938 18 1 5.4632 -3.5422 -4.6315 19 6 4.6738 -4.3103 -6.5037 20 8 5.9371 -4.8968 -6.8238 21 6 3.2825 -3.3308 -4.6210 22 6 0.9666 -3.0568 1.2278 23 6 2.0020 -3.2922 2.1129 24 6 1.7347 -3.8027 3.3694 25 6 0.4330 -4.0876 3.7371 26 6 -0.6020 -3.8571 2.8501 27 6 -0.3352 -3.3413 1.5956 28 1 -0.4849 0.8400 0.0004 29 1 1.6093 -4.4586 -0.9541 30 1 3.0826 -3.5974 -0.4484 31 1 4.3974 -4.8739 -2.1347 32 1 2.9300 -5.7366 -2.6701 33 1 3.7866 -6.1092 -4.8141 34 1 5.3694 -5.8683 -4.0042 35 1 3.8727 -4.9802 -6.8158 36 1 4.5736 -3.3573 -7.0233 37 1 6.0622 -5.0710 -7.7667 38 1 3.4260 -2.2536 -4.7060 39 1 2.4619 -3.6565 -5.2603 40 1 3.0196 -3.0742 1.8238 41 1 2.5433 -3.9832 4.0622 42 1 0.2245 -4.4906 4.7172 43 1 -1.6190 -4.0801 3.1372 44 1 -1.1437 -3.1616 0.9025 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356540672.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:20 Heat of formation + Delta-G solvation = -64.750413 kcal Electronic energy + Delta-G solvation = -24753.297830 eV Core-core repulsion = 21249.107941 eV Total energy + Delta-G solvation = -3504.189890 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.67879 -38.40762 -37.57277 -36.22711 -33.93925 -31.99202 -31.30800 -29.97996 -29.41943 -28.75605 -26.19455 -24.80296 -23.05633 -22.34208 -21.56976 -20.46507 -19.77374 -18.50009 -17.60975 -16.62987 -16.46848 -16.12552 -15.69141 -14.94066 -14.69560 -14.27767 -14.15627 -14.02590 -13.72340 -13.54617 -13.21011 -12.87376 -12.55318 -12.50434 -12.16763 -12.04221 -11.83733 -11.57773 -11.52692 -11.20432 -11.10659 -10.82825 -10.77830 -10.64162 -10.55891 -10.23162 -10.17800 -10.02671 -9.41309 -9.04306 -8.85927 -8.31300 -8.15802 -8.01642 -7.57649 -5.90218 -3.89566 2.31746 2.37491 3.39366 3.41424 3.44839 3.49182 3.54641 3.96491 4.49893 4.55034 4.57802 4.77962 4.89010 5.16081 5.16813 5.27989 5.40876 5.42010 5.51919 5.61806 5.68784 5.74981 5.76322 5.81636 5.87142 5.93062 6.04202 6.14087 6.18360 6.26466 6.31309 6.44056 6.56657 6.68519 6.85656 6.94921 7.08299 7.33778 7.35295 7.47484 7.56197 7.88662 7.98070 8.05701 8.12291 8.41808 9.07135 9.10355 9.72227 11.20033 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.013407 B = 0.004284 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.018572 B = 6534.041782 C = 7970.150887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.079 3.921 3 Si 0.886 3.114 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.279 1.279 7 C -0.492 4.492 8 H 0.049 0.951 9 C 0.079 3.921 10 H 0.072 0.928 11 C -0.116 4.116 12 C 0.530 3.470 13 O -0.493 6.493 14 N -0.636 5.636 15 C 0.103 3.897 16 C -0.120 4.120 17 C -0.104 4.104 18 H 0.091 0.909 19 C 0.088 3.912 20 O -0.573 6.573 21 C 0.116 3.884 22 C -0.020 4.020 23 C -0.115 4.115 24 C -0.132 4.132 25 C -0.156 4.156 26 C -0.128 4.128 27 C -0.119 4.119 28 H 0.259 0.741 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.049 0.951 36 H 0.049 0.951 37 H 0.378 0.622 38 H 0.077 0.923 39 H 0.061 0.939 40 H 0.112 0.888 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.105 0.895 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.864 -12.920 -7.857 16.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.124 4.124 3 Si 0.714 3.286 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.205 1.205 7 C -0.530 4.530 8 H 0.068 0.932 9 C 0.060 3.940 10 H 0.090 0.910 11 C -0.156 4.156 12 C 0.319 3.681 13 O -0.364 6.364 14 N -0.375 5.375 15 C -0.021 4.021 16 C -0.158 4.158 17 C -0.124 4.124 18 H 0.109 0.891 19 C 0.010 3.990 20 O -0.378 6.378 21 C -0.007 4.007 22 C -0.021 4.021 23 C -0.133 4.133 24 C -0.150 4.150 25 C -0.174 4.174 26 C -0.146 4.146 27 C -0.137 4.137 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.225 0.775 38 H 0.096 0.904 39 H 0.079 0.921 40 H 0.131 0.869 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.123 0.877 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 6.409 -12.069 -7.303 15.494 hybrid contribution 0.420 0.978 -0.481 1.168 sum 6.829 -11.091 -7.784 15.173 Atomic orbital electron populations 1.69901 1.05933 1.26496 1.49542 1.24799 0.94649 0.98802 0.94154 0.86762 0.79797 0.83679 0.78331 1.20309 1.21421 1.20516 1.20640 0.92360 0.89627 1.50357 0.93243 1.17845 0.97542 0.91431 0.87147 0.91017 1.21775 1.02212 0.99835 0.91759 1.20686 0.77046 0.83707 0.86650 1.90767 1.46181 1.21235 1.78204 1.48734 1.54758 1.22732 1.11321 1.21940 0.96353 0.86009 0.97751 1.22635 1.00890 0.96692 0.95570 1.22345 0.98963 0.97213 0.93831 0.89075 1.22063 0.85216 0.96778 0.94988 1.86480 1.36757 1.84521 1.30039 1.21937 0.94816 1.00160 0.83819 1.20725 0.91959 0.90351 0.99024 1.20943 0.99389 0.99557 0.93446 1.20970 0.96070 1.01272 0.96667 1.20792 0.93347 1.04289 0.98984 1.20980 0.97964 1.00996 0.94690 1.21085 0.97078 0.99351 0.96191 0.93098 0.91744 0.90588 0.91641 0.91686 0.90859 0.90037 0.93280 0.93251 0.77485 0.90409 0.92098 0.86947 0.87684 0.87824 0.87654 0.86853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.25 12.87 55.43 0.71 -25.53 16 2 C 0.08 2.27 5.45 -17.82 -0.10 2.17 16 3 Si 0.89 22.58 29.54 -169.99 -5.02 17.56 16 4 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.49 -13.45 6.37 -34.44 -0.22 -13.67 16 8 H 0.05 1.35 7.82 -52.48 -0.41 0.94 16 9 C 0.08 1.93 1.67 -92.93 -0.16 1.78 16 10 H 0.07 2.00 6.98 -51.93 -0.36 1.64 16 11 C -0.12 -2.32 4.14 -27.88 -0.12 -2.43 16 12 C 0.53 11.10 7.60 -10.99 -0.08 11.02 16 13 O -0.49 -12.75 15.24 5.55 0.08 -12.67 16 14 N -0.64 -10.35 3.33 -170.50 -0.57 -10.92 16 15 C 0.10 1.26 6.49 -3.06 -0.02 1.24 16 16 C -0.12 -1.20 6.39 -24.89 -0.16 -1.36 16 17 C -0.10 -1.15 3.30 -88.46 -0.29 -1.44 16 18 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 19 C 0.09 0.76 6.50 37.15 0.24 1.00 16 20 O -0.57 -5.04 13.63 -35.23 -0.48 -5.52 16 21 C 0.12 1.61 6.38 -2.52 -0.02 1.60 16 22 C -0.02 -0.45 4.77 -104.63 -0.50 -0.95 16 23 C -0.12 -2.36 8.86 -39.58 -0.35 -2.72 16 24 C -0.13 -2.40 10.05 -39.58 -0.40 -2.79 16 25 C -0.16 -2.75 10.05 -39.58 -0.40 -3.15 16 26 C -0.13 -2.40 10.05 -39.58 -0.40 -2.79 16 27 C -0.12 -2.55 9.67 -39.58 -0.38 -2.93 16 28 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 29 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.08 1.42 7.77 -51.93 -0.40 1.02 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.66 7.92 -51.92 -0.41 0.25 16 34 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.05 0.37 7.97 -51.93 -0.41 -0.04 16 36 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.38 1.57 9.12 45.56 0.42 1.98 16 38 H 0.08 1.21 8.04 -51.93 -0.42 0.79 16 39 H 0.06 0.78 8.04 -51.93 -0.42 0.37 16 40 H 0.11 2.23 7.76 -52.48 -0.41 1.82 16 41 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 42 H 0.10 1.52 8.06 -52.48 -0.42 1.10 16 43 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 44 H 0.11 2.45 7.95 -52.49 -0.42 2.03 16 LS Contribution 364.33 15.07 5.49 5.49 Total: -1.00 -34.05 364.33 -9.31 -43.36 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -6.19 Total: 3.66 kcal Atomic # 6 Polarization: -12.08 SS G_CDS: -3.34 Total: -15.42 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: 0.15 Total: -36.45 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: -0.40 Total: -18.19 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.05 -9.31 -43.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356540672.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.393 kcal (2) G-P(sol) polarization free energy of solvation -34.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds