Wall clock time and date at job start Tue Mar 31 2020 08:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00383 * 2 1 4 4 H 1.48493 * 109.47077 * 274.38262 * 3 2 1 5 5 H 1.48491 * 109.46872 * 34.38538 * 3 2 1 6 6 H 1.48504 * 109.46661 * 154.38289 * 3 2 1 7 7 C 1.37881 * 119.99547 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00055 * 355.74005 * 7 2 1 9 9 C 1.50696 * 120.00027 * 175.73253 * 7 2 1 10 10 H 1.09004 * 109.47445 * 335.43558 * 9 7 2 11 11 C 1.53005 * 109.47555 * 215.43591 * 9 7 2 12 12 C 1.50698 * 109.46921 * 66.00390 * 11 9 7 13 13 O 1.21279 * 120.00174 * 359.97438 * 12 11 9 14 14 N 1.34779 * 119.99477 * 180.02562 * 12 11 9 15 15 C 1.47018 * 125.65176 * 359.68833 * 14 12 11 16 16 C 1.54316 * 107.27587 * 180.97048 * 15 14 12 17 17 C 1.55159 * 102.86402 * 22.52903 * 16 15 14 18 18 H 1.08992 * 111.03805 * 82.38985 * 17 16 15 19 19 C 1.52995 * 111.00213 * 206.22915 * 17 16 15 20 20 O 1.42901 * 109.47336 * 287.19336 * 19 17 16 21 21 C 1.47424 * 125.64398 * 180.02562 * 14 12 11 22 22 C 1.50700 * 109.46832 * 95.43390 * 9 7 2 23 23 C 1.38237 * 120.00146 * 233.55696 * 22 9 7 24 24 C 1.38236 * 120.00205 * 179.97438 * 23 22 9 25 25 C 1.38229 * 119.99893 * 0.02868 * 24 23 22 26 26 C 1.38236 * 120.00272 * 0.24941 * 25 24 23 27 27 C 1.38234 * 120.00323 * 53.54034 * 22 9 7 28 28 H 0.97005 * 119.99199 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47019 * 186.00880 * 11 9 7 30 30 H 1.09002 * 109.46262 * 306.00289 * 11 9 7 31 31 H 1.08999 * 109.88168 * 300.51828 * 15 14 12 32 32 H 1.08997 * 109.88407 * 61.67870 * 15 14 12 33 33 H 1.08996 * 110.92412 * 264.10726 * 16 15 14 34 34 H 1.09003 * 110.73800 * 140.85814 * 16 15 14 35 35 H 1.09003 * 109.47450 * 47.19717 * 19 17 16 36 36 H 1.09004 * 109.47155 * 167.19204 * 19 17 16 37 37 H 0.96696 * 113.99900 * 180.02562 * 20 19 17 38 38 H 1.09000 * 110.36950 * 274.66902 * 21 14 12 39 39 H 1.09004 * 110.36843 * 36.99131 * 21 14 12 40 40 H 1.07997 * 120.00087 * 359.97438 * 23 22 9 41 41 H 1.08002 * 119.99854 * 180.02562 * 24 23 22 42 42 H 1.08003 * 120.00248 * 179.97438 * 25 24 23 43 43 H 1.07998 * 120.00461 * 179.72305 * 26 25 24 44 44 H 1.08009 * 119.99504 * 359.97438 * 27 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4041 2.0998 -1.3959 5 1 1.4962 2.6240 0.7907 6 1 3.5901 1.4149 0.6054 7 6 2.0045 -1.1941 -0.0005 8 1 1.4666 -2.1282 0.0685 9 6 3.5083 -1.1960 -0.0976 10 1 3.8424 -0.2781 -0.5815 11 6 3.9648 -2.4019 -0.9214 12 6 3.4950 -2.2449 -2.3446 13 8 2.8574 -1.2652 -2.6682 14 7 3.7825 -3.1937 -3.2577 15 6 4.5479 -4.4230 -3.0041 16 6 4.6442 -5.1870 -4.3414 17 6 4.4228 -4.0692 -5.3945 18 1 5.3471 -3.5250 -5.5877 19 6 3.8465 -4.6431 -6.6903 20 8 4.8625 -5.3723 -7.3817 21 6 3.3875 -3.1672 -4.6777 22 6 4.1008 -1.2791 1.2855 23 6 5.0312 -0.3429 1.6963 24 6 5.5744 -0.4188 2.9652 25 6 5.1875 -1.4313 3.8231 26 6 4.2614 -2.3709 3.4104 27 6 3.7137 -2.2913 2.1436 28 1 -0.4849 0.8402 0.0004 29 1 5.0528 -2.4639 -0.9025 30 1 3.5416 -3.3126 -0.4973 31 1 5.5462 -4.1709 -2.6462 32 1 4.0310 -5.0359 -2.2656 33 1 3.8644 -5.9450 -4.4137 34 1 5.6299 -5.6374 -4.4585 35 1 3.0169 -5.3100 -6.4551 36 1 3.4903 -3.8289 -7.3215 37 1 4.5673 -5.7647 -8.2147 38 1 2.3829 -3.5723 -4.7997 39 1 3.4370 -2.1500 -5.0664 40 1 5.3338 0.4478 1.0258 41 1 6.3010 0.3129 3.2862 42 1 5.6121 -1.4909 4.8144 43 1 3.9625 -3.1645 4.0791 44 1 2.9862 -3.0224 1.8229 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356540673.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:23 Heat of formation + Delta-G solvation = -62.348544 kcal Electronic energy + Delta-G solvation = -24815.794274 eV Core-core repulsion = 21311.708537 eV Total energy + Delta-G solvation = -3504.085737 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.75635 -38.63270 -37.65124 -36.27444 -34.06544 -32.04388 -31.54248 -30.19737 -29.46475 -28.92877 -26.47783 -24.90489 -23.00743 -22.36652 -21.81598 -20.49650 -19.77792 -18.50542 -17.62185 -16.94259 -16.63674 -16.28159 -15.83831 -15.01297 -14.84119 -14.45504 -14.19857 -14.02418 -13.66857 -13.57635 -13.25566 -12.93303 -12.71239 -12.67635 -12.37887 -12.23974 -12.04724 -11.77093 -11.64224 -11.23472 -11.15368 -10.99598 -10.77850 -10.70987 -10.52270 -10.33216 -10.18818 -9.85852 -9.59846 -9.14545 -8.95266 -8.41283 -8.21671 -8.18262 -7.79564 -5.95944 -3.92954 2.10883 2.15720 3.34205 3.44543 3.45493 3.50289 3.52304 3.94665 4.47358 4.53580 4.55131 4.60910 4.86532 5.13623 5.15853 5.24665 5.32346 5.40998 5.47578 5.52997 5.56146 5.57984 5.69851 5.72537 5.79172 5.88683 5.96561 5.98867 6.08265 6.12266 6.16187 6.26175 6.34284 6.55594 6.67764 6.74067 6.86284 7.03369 7.15465 7.28461 7.34186 7.59463 7.74803 7.84581 8.01673 8.55133 8.97228 9.03040 9.69097 11.17146 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.015410 B = 0.004192 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.524052 B = 6677.851850 C = 7823.071876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.086 3.914 3 Si 0.867 3.133 4 H -0.277 1.277 5 H -0.294 1.294 6 H -0.253 1.253 7 C -0.489 4.489 8 H 0.070 0.930 9 C 0.057 3.943 10 H 0.049 0.951 11 C -0.110 4.110 12 C 0.531 3.469 13 O -0.498 6.498 14 N -0.634 5.634 15 C 0.103 3.897 16 C -0.120 4.120 17 C -0.104 4.104 18 H 0.090 0.910 19 C 0.087 3.913 20 O -0.573 6.573 21 C 0.116 3.884 22 C -0.040 4.040 23 C -0.134 4.134 24 C -0.128 4.128 25 C -0.149 4.149 26 C -0.129 4.129 27 C -0.100 4.100 28 H 0.261 0.739 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.050 0.950 36 H 0.049 0.951 37 H 0.379 0.621 38 H 0.064 0.936 39 H 0.077 0.923 40 H 0.112 0.888 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.110 0.890 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.431 -10.911 -7.324 17.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.116 4.116 3 Si 0.695 3.305 4 H -0.203 1.203 5 H -0.221 1.221 6 H -0.177 1.177 7 C -0.526 4.526 8 H 0.088 0.912 9 C 0.037 3.963 10 H 0.067 0.933 11 C -0.150 4.150 12 C 0.321 3.679 13 O -0.370 6.370 14 N -0.373 5.373 15 C -0.021 4.021 16 C -0.158 4.158 17 C -0.123 4.123 18 H 0.108 0.892 19 C 0.009 3.991 20 O -0.378 6.378 21 C -0.007 4.007 22 C -0.041 4.041 23 C -0.152 4.152 24 C -0.146 4.146 25 C -0.167 4.167 26 C -0.147 4.147 27 C -0.118 4.118 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.102 0.898 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.100 0.900 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.226 0.774 38 H 0.082 0.918 39 H 0.095 0.905 40 H 0.130 0.870 41 H 0.126 0.874 42 H 0.125 0.875 43 H 0.128 0.872 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 11.217 -9.958 -6.886 16.504 hybrid contribution -0.147 0.742 -0.392 0.852 sum 11.070 -9.216 -7.278 16.138 Atomic orbital electron populations 1.69898 1.06431 1.26741 1.50557 1.24873 0.94478 0.98851 0.93392 0.86997 0.81208 0.84053 0.78259 1.20338 1.22080 1.17687 1.20584 0.87278 0.94412 1.50289 0.91183 1.18135 0.97284 0.93818 0.87058 0.93279 1.21640 0.99538 1.02413 0.91418 1.20584 0.79297 0.81264 0.86783 1.90754 1.37068 1.29281 1.79846 1.48649 1.57055 1.22258 1.09346 1.21951 0.96251 0.86229 0.97654 1.22638 1.02969 0.97093 0.93128 1.22331 0.99879 0.96801 0.93290 0.89164 1.22064 0.89723 0.94620 0.92696 1.86466 1.39458 1.72525 1.39399 1.21947 0.96841 1.00061 0.81878 1.20761 0.91589 0.92696 0.99008 1.21153 0.98067 0.99624 0.96373 1.20962 1.00587 0.98499 0.94554 1.20859 1.00128 0.96644 0.99080 1.21054 0.98002 0.99102 0.96514 1.20978 0.98706 0.98973 0.93179 0.92917 0.91433 0.89817 0.91654 0.91493 0.90722 0.90027 0.93169 0.93229 0.77437 0.91807 0.90462 0.87047 0.87410 0.87452 0.87199 0.86219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.36 13.96 55.43 0.77 -27.59 16 2 C 0.09 2.56 5.47 -17.82 -0.10 2.46 16 3 Si 0.87 22.73 26.95 -169.99 -4.58 18.15 16 4 H -0.28 -7.46 7.11 56.52 0.40 -7.05 16 5 H -0.29 -7.73 7.11 56.52 0.40 -7.33 16 6 H -0.25 -6.08 4.53 56.52 0.26 -5.83 16 7 C -0.49 -13.55 6.86 -34.44 -0.24 -13.78 16 8 H 0.07 2.10 8.06 -52.49 -0.42 1.68 16 9 C 0.06 1.31 1.17 -92.92 -0.11 1.20 16 10 H 0.05 1.21 5.06 -51.93 -0.26 0.95 16 11 C -0.11 -2.12 4.16 -27.88 -0.12 -2.24 16 12 C 0.53 10.94 7.60 -10.99 -0.08 10.86 16 13 O -0.50 -12.72 15.27 5.56 0.08 -12.63 16 14 N -0.63 -10.18 3.33 -170.54 -0.57 -10.74 16 15 C 0.10 1.22 6.48 -3.07 -0.02 1.20 16 16 C -0.12 -1.18 6.39 -24.90 -0.16 -1.34 16 17 C -0.10 -1.10 3.29 -88.48 -0.29 -1.39 16 18 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 19 C 0.09 0.75 6.49 37.15 0.24 0.99 16 20 O -0.57 -4.93 13.63 -35.23 -0.48 -5.41 16 21 C 0.12 1.60 6.38 -2.54 -0.02 1.59 16 22 C -0.04 -0.84 4.57 -104.62 -0.48 -1.32 16 23 C -0.13 -2.64 8.55 -39.58 -0.34 -2.98 16 24 C -0.13 -2.20 10.05 -39.59 -0.40 -2.60 16 25 C -0.15 -2.43 10.05 -39.59 -0.40 -2.83 16 26 C -0.13 -2.20 10.05 -39.58 -0.40 -2.60 16 27 C -0.10 -1.97 8.92 -39.58 -0.35 -2.32 16 28 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 29 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 30 H 0.08 1.52 8.04 -51.93 -0.42 1.10 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.68 7.91 -51.93 -0.41 0.27 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.05 0.39 7.97 -51.93 -0.41 -0.02 16 36 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.38 1.52 9.12 45.56 0.42 1.94 16 38 H 0.06 0.87 8.03 -51.93 -0.42 0.45 16 39 H 0.08 1.16 8.04 -51.93 -0.42 0.74 16 40 H 0.11 2.15 7.09 -52.49 -0.37 1.78 16 41 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 42 H 0.11 1.44 8.06 -52.48 -0.42 1.02 16 43 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 44 H 0.12 2.33 7.88 -52.48 -0.41 1.92 16 LS Contribution 356.90 15.07 5.38 5.38 Total: -1.00 -35.49 356.90 -8.86 -44.35 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -6.22 Total: 3.61 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: -3.25 Total: -15.11 kcal Atomic # 7 Polarization: -38.54 SS G_CDS: 0.21 Total: -38.34 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: -0.40 Total: -18.04 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -4.58 Total: 18.15 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -35.49 -8.86 -44.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356540673.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.995 kcal (2) G-P(sol) polarization free energy of solvation -35.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds