Wall clock time and date at job start Tue Mar 31 2020 08:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86799 * 119.99997 * 2 1 4 4 H 1.48503 * 109.47465 * 264.64008 * 3 2 1 5 5 H 1.48511 * 109.47087 * 24.63528 * 3 2 1 6 6 H 1.48501 * 109.47363 * 144.63256 * 3 2 1 7 7 C 1.37871 * 120.00323 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00155 * 4.85353 * 7 2 1 9 9 C 1.50699 * 120.00456 * 184.85609 * 7 2 1 10 10 H 1.09004 * 109.46811 * 34.72003 * 9 7 2 11 11 C 1.52994 * 109.47601 * 154.72138 * 9 7 2 12 12 C 1.50705 * 109.47178 * 295.00096 * 11 9 7 13 13 O 1.21279 * 119.99953 * 0.02562 * 12 11 9 14 14 N 1.34775 * 120.00220 * 179.97438 * 12 11 9 15 15 C 1.47024 * 125.64619 * 0.03401 * 14 12 11 16 16 C 1.54321 * 107.27141 * 178.89856 * 15 14 12 17 17 C 1.55159 * 102.94270 * 337.80280 * 16 15 14 18 18 H 1.08992 * 111.00465 * 277.39271 * 17 16 15 19 19 C 1.52997 * 111.00619 * 153.57339 * 17 16 15 20 20 O 1.42902 * 109.47039 * 66.45678 * 19 17 16 21 21 C 1.47423 * 125.65288 * 179.71448 * 14 12 11 22 22 C 1.50698 * 109.46988 * 274.72437 * 9 7 2 23 23 C 1.38234 * 120.00141 * 295.27055 * 22 9 7 24 24 C 1.38230 * 120.00536 * 179.80906 * 23 22 9 25 25 C 1.38238 * 119.99555 * 0.42599 * 24 23 22 26 26 C 1.38239 * 120.00147 * 359.80377 * 25 24 23 27 27 C 1.38235 * 119.99979 * 0.02562 * 26 25 24 28 28 H 0.96996 * 120.00513 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.47313 * 54.99693 * 11 9 7 30 30 H 1.09001 * 109.47465 * 175.00137 * 11 9 7 31 31 H 1.09005 * 109.88301 * 298.31176 * 15 14 12 32 32 H 1.09004 * 109.88528 * 59.47762 * 15 14 12 33 33 H 1.09001 * 110.72423 * 96.16584 * 16 15 14 34 34 H 1.08999 * 110.72141 * 219.26183 * 16 15 14 35 35 H 1.08998 * 109.47154 * 186.45320 * 19 17 16 36 36 H 1.09002 * 109.47275 * 306.45810 * 19 17 16 37 37 H 0.96696 * 114.00443 * 180.02562 * 20 19 17 38 38 H 1.09008 * 110.35991 * 323.01269 * 21 14 12 39 39 H 1.09001 * 110.36554 * 85.32849 * 21 14 12 40 40 H 1.08008 * 119.99606 * 359.97438 * 23 22 9 41 41 H 1.07998 * 120.00716 * 180.20984 * 24 23 22 42 42 H 1.08007 * 119.99777 * 179.78816 * 25 24 23 43 43 H 1.08003 * 120.00063 * 179.97438 * 26 25 24 44 44 H 1.07994 * 119.99969 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6099 1.9811 -1.3940 5 1 1.3944 2.6828 0.5837 6 1 3.4853 1.4756 0.8104 7 6 2.0045 -1.1940 0.0005 8 1 1.4675 -2.1277 -0.0782 9 6 3.5074 -1.1963 0.1110 10 1 3.8256 -0.3774 0.7563 11 6 3.9730 -2.5260 0.7075 12 6 3.4691 -2.6456 2.1228 13 8 2.8027 -1.7551 2.6065 14 7 3.7580 -3.7425 2.8506 15 6 4.5515 -4.8915 2.3905 16 6 4.6408 -5.8870 3.5664 17 6 4.3718 -4.9892 4.8029 18 1 5.2798 -4.4746 5.1170 19 6 3.7807 -5.8047 5.9546 20 8 4.7552 -6.7370 6.4273 21 6 3.3364 -3.9860 4.2421 22 6 4.1120 -1.0208 -1.2582 23 6 3.9294 -1.9927 -2.2241 24 6 4.4806 -1.8300 -3.4813 25 6 5.2219 -0.6994 -3.7698 26 6 5.4085 0.2703 -2.8025 27 6 4.8543 0.1092 -1.5464 28 1 -0.4851 0.8400 -0.0004 29 1 3.5798 -3.3493 0.1111 30 1 5.0624 -2.5637 0.7054 31 1 4.0599 -5.3650 1.5406 32 1 5.5511 -4.5621 2.1069 33 1 3.8767 -6.6592 3.4769 34 1 5.6338 -6.3334 3.6192 35 1 3.4958 -5.1345 6.7656 36 1 2.9014 -6.3448 5.6036 37 1 4.4484 -7.2895 7.1591 38 1 3.3589 -3.0578 4.8132 39 1 2.3378 -4.4224 4.2650 40 1 3.3537 -2.8780 -1.9973 41 1 4.3351 -2.5877 -4.2370 42 1 5.6554 -0.5739 -4.7511 43 1 5.9881 1.1534 -3.0278 44 1 5.0005 0.8665 -0.7905 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356540674.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:26 Heat of formation + Delta-G solvation = -59.692985 kcal Electronic energy + Delta-G solvation = -24825.573672 eV Core-core repulsion = 21321.603089 eV Total energy + Delta-G solvation = -3503.970583 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.77090 -38.66577 -37.66227 -36.27083 -34.08974 -32.04834 -31.55819 -30.24139 -29.47549 -28.93119 -26.49504 -24.93271 -23.01162 -22.37537 -21.84636 -20.48480 -19.81474 -18.50057 -17.58861 -17.01658 -16.61991 -16.34104 -15.84251 -15.03886 -14.85298 -14.48609 -14.20498 -14.04489 -13.68729 -13.59023 -13.24727 -12.95615 -12.75933 -12.64720 -12.44590 -12.19645 -12.07781 -11.79303 -11.68616 -11.24321 -11.17232 -11.04287 -10.77760 -10.70264 -10.57073 -10.34403 -10.20206 -9.86135 -9.57894 -9.17067 -8.97935 -8.45448 -8.22733 -8.21067 -7.79645 -5.97199 -3.93193 2.07722 2.14252 3.33446 3.42184 3.43492 3.45693 3.46763 3.93553 4.49325 4.51463 4.55003 4.56722 4.85791 5.12113 5.14779 5.23958 5.29929 5.40938 5.47360 5.51087 5.53675 5.56353 5.67690 5.72248 5.79999 5.88034 5.94683 5.97088 6.04093 6.10843 6.15943 6.21701 6.32480 6.51621 6.65959 6.72807 6.82894 7.05311 7.13343 7.25136 7.33812 7.59686 7.71461 7.81684 8.00558 8.54029 8.96271 9.02187 9.66022 11.16048 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.016407 B = 0.004101 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.181772 B = 6825.293239 C = 7927.616258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.083 3.917 3 Si 0.868 3.132 4 H -0.272 1.272 5 H -0.293 1.293 6 H -0.263 1.263 7 C -0.481 4.481 8 H 0.071 0.929 9 C 0.047 3.953 10 H 0.054 0.946 11 C -0.108 4.108 12 C 0.530 3.470 13 O -0.497 6.497 14 N -0.634 5.634 15 C 0.102 3.898 16 C -0.119 4.119 17 C -0.104 4.104 18 H 0.089 0.911 19 C 0.087 3.913 20 O -0.573 6.573 21 C 0.116 3.884 22 C -0.037 4.037 23 C -0.107 4.107 24 C -0.124 4.124 25 C -0.151 4.151 26 C -0.122 4.122 27 C -0.142 4.142 28 H 0.262 0.738 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.049 0.951 36 H 0.050 0.950 37 H 0.379 0.621 38 H 0.077 0.923 39 H 0.063 0.937 40 H 0.118 0.882 41 H 0.111 0.889 42 H 0.108 0.892 43 H 0.109 0.891 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.477 -12.020 5.667 17.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.119 4.119 3 Si 0.696 3.304 4 H -0.198 1.198 5 H -0.219 1.219 6 H -0.188 1.188 7 C -0.518 4.518 8 H 0.089 0.911 9 C 0.028 3.972 10 H 0.072 0.928 11 C -0.148 4.148 12 C 0.320 3.680 13 O -0.368 6.368 14 N -0.373 5.373 15 C -0.022 4.022 16 C -0.157 4.157 17 C -0.123 4.123 18 H 0.107 0.893 19 C 0.009 3.991 20 O -0.378 6.378 21 C -0.007 4.007 22 C -0.038 4.038 23 C -0.125 4.125 24 C -0.142 4.142 25 C -0.169 4.169 26 C -0.140 4.140 27 C -0.160 4.160 28 H 0.072 0.928 29 H 0.102 0.898 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.226 0.774 38 H 0.096 0.904 39 H 0.082 0.918 40 H 0.136 0.864 41 H 0.129 0.871 42 H 0.127 0.873 43 H 0.127 0.873 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 11.244 -11.006 5.384 16.630 hybrid contribution -0.126 0.683 0.303 0.757 sum 11.118 -10.324 5.688 16.203 Atomic orbital electron populations 1.69879 1.06271 1.26765 1.50677 1.24862 0.94518 0.98742 0.93823 0.87054 0.80389 0.84228 0.78701 1.19763 1.21936 1.18773 1.20602 0.87199 0.94465 1.49573 0.91072 1.18285 0.97173 0.93342 0.88402 0.92772 1.21584 0.99489 1.01793 0.91945 1.20580 0.79801 0.79785 0.87878 1.90759 1.36245 1.38353 1.71448 1.48650 1.55440 1.19592 1.13623 1.21973 0.95851 0.86961 0.97383 1.22600 1.02952 0.97053 0.93046 1.22289 0.99697 0.96039 0.94271 0.89268 1.22050 0.90473 0.90913 0.95637 1.86463 1.42261 1.53553 1.55528 1.21907 0.96670 0.98530 0.83607 1.20764 0.91346 0.92726 0.98980 1.20927 0.99142 0.99720 0.92747 1.21043 0.98733 0.97681 0.96759 1.20857 1.01885 0.95450 0.98695 1.20964 1.00559 0.98595 0.93880 1.21086 0.99490 0.98543 0.96882 0.92834 0.89781 0.91278 0.91486 0.91668 0.90759 0.90000 0.93245 0.93178 0.77435 0.90440 0.91832 0.86382 0.87121 0.87343 0.87304 0.87252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.44 13.96 55.43 0.77 -27.66 16 2 C 0.08 2.47 5.47 -17.82 -0.10 2.37 16 3 Si 0.87 22.86 24.76 -169.99 -4.21 18.65 16 4 H -0.27 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.76 7.11 56.52 0.40 -7.36 16 6 H -0.26 -6.64 5.95 56.52 0.34 -6.30 16 7 C -0.48 -13.50 7.19 -34.44 -0.25 -13.75 16 8 H 0.07 2.16 8.05 -52.49 -0.42 1.74 16 9 C 0.05 1.11 1.24 -92.93 -0.12 0.99 16 10 H 0.05 1.37 5.26 -51.93 -0.27 1.10 16 11 C -0.11 -2.08 4.03 -27.88 -0.11 -2.20 16 12 C 0.53 10.90 7.60 -10.98 -0.08 10.82 16 13 O -0.50 -12.68 15.24 5.56 0.08 -12.59 16 14 N -0.63 -10.12 3.33 -170.65 -0.57 -10.69 16 15 C 0.10 1.21 6.49 -3.06 -0.02 1.19 16 16 C -0.12 -1.17 6.29 -24.90 -0.16 -1.32 16 17 C -0.10 -1.09 3.31 -88.59 -0.29 -1.38 16 18 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 19 C 0.09 0.74 6.48 37.16 0.24 0.98 16 20 O -0.57 -4.84 13.51 -35.23 -0.48 -5.32 16 21 C 0.12 1.59 6.37 -2.65 -0.02 1.57 16 22 C -0.04 -0.80 4.30 -104.62 -0.45 -1.25 16 23 C -0.11 -2.08 8.94 -39.59 -0.35 -2.44 16 24 C -0.12 -2.12 10.05 -39.58 -0.40 -2.51 16 25 C -0.15 -2.49 10.05 -39.58 -0.40 -2.89 16 26 C -0.12 -2.16 10.05 -39.58 -0.40 -2.56 16 27 C -0.14 -2.89 8.16 -39.58 -0.32 -3.22 16 28 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 29 H 0.08 1.52 7.33 -51.93 -0.38 1.13 16 30 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.69 8.01 -51.93 -0.42 0.27 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.05 0.39 8.11 -51.93 -0.42 -0.03 16 37 H 0.38 1.48 9.12 45.56 0.42 1.90 16 38 H 0.08 1.14 8.04 -51.92 -0.42 0.73 16 39 H 0.06 0.86 8.03 -51.93 -0.42 0.44 16 40 H 0.12 2.20 7.37 -52.48 -0.39 1.81 16 41 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 42 H 0.11 1.47 8.06 -52.48 -0.42 1.05 16 43 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 44 H 0.11 2.22 6.76 -52.49 -0.36 1.87 16 LS Contribution 354.39 15.07 5.34 5.34 Total: -1.00 -35.72 354.39 -8.36 -44.07 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -6.08 Total: 3.79 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: -3.22 Total: -15.60 kcal Atomic # 7 Polarization: -38.56 SS G_CDS: 0.21 Total: -38.35 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: -0.39 Total: -17.91 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -4.21 Total: 18.65 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.72 -8.36 -44.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356540674.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.619 kcal (2) G-P(sol) polarization free energy of solvation -35.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds