Wall clock time and date at job start Tue Mar 31 2020 08:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86798 * 120.00080 * 2 1 4 4 H 1.48496 * 109.47014 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46901 * 300.00002 * 3 2 1 6 6 H 1.48500 * 109.46952 * 59.99473 * 3 2 1 7 7 C 1.39933 * 119.99703 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99588 * 162.54646 * 7 2 1 9 9 C 1.41432 * 120.00569 * 342.55137 * 7 2 1 10 10 C 1.40782 * 120.18055 * 154.97928 * 9 7 2 11 11 C 1.37717 * 120.04437 * 179.97438 * 10 9 7 12 12 C 1.38366 * 120.40653 * 0.27862 * 11 10 9 13 13 C 1.39878 * 120.35994 * 359.49282 * 12 11 10 14 14 C 1.47888 * 120.02790 * 180.23300 * 13 12 11 15 15 O 1.21541 * 120.00446 * 180.24671 * 14 13 12 16 16 N 1.34777 * 119.99785 * 0.24880 * 14 13 12 17 17 C 1.46503 * 120.00218 * 179.97438 * 16 14 13 18 18 C 1.52994 * 109.47213 * 180.02562 * 17 16 14 19 19 H 1.09002 * 109.47423 * 304.99635 * 18 17 16 20 20 C 1.52998 * 109.47510 * 65.00046 * 18 17 16 21 21 C 1.53002 * 109.47332 * 179.97438 * 20 18 17 22 22 C 1.52996 * 109.47300 * 299.99997 * 21 20 18 23 23 C 1.52998 * 109.46925 * 59.99754 * 22 21 20 24 24 H 1.09002 * 109.47113 * 60.00686 * 23 22 21 25 25 O 1.42904 * 109.47296 * 180.02562 * 23 22 21 26 26 C 1.52994 * 109.47510 * 300.00085 * 23 22 21 27 27 C 1.39035 * 119.95012 * 0.48131 * 13 12 11 28 28 H 0.97002 * 120.00389 * 0.02562 * 1 2 3 29 29 H 1.08007 * 119.97995 * 359.97438 * 10 9 7 30 30 H 1.07993 * 119.79515 * 180.02562 * 11 10 9 31 31 H 1.08002 * 119.82126 * 179.73839 * 12 11 10 32 32 H 0.97004 * 119.99981 * 0.02562 * 16 14 13 33 33 H 1.09009 * 109.46994 * 300.00026 * 17 16 14 34 34 H 1.09001 * 109.47087 * 59.99784 * 17 16 14 35 35 H 1.09005 * 109.47140 * 299.99796 * 20 18 17 36 36 H 1.09000 * 109.47051 * 59.99941 * 20 18 17 37 37 H 1.09000 * 109.46985 * 60.00042 * 21 20 18 38 38 H 1.08997 * 109.47133 * 179.97438 * 21 20 18 39 39 H 1.08998 * 109.46990 * 179.97438 * 22 21 20 40 40 H 1.09000 * 109.47138 * 299.99951 * 22 21 20 41 41 H 0.96705 * 114.00013 * 300.00766 * 25 23 22 42 42 H 1.09002 * 109.47423 * 300.00411 * 26 23 22 43 43 H 1.09004 * 109.47789 * 180.02562 * 26 23 22 44 44 H 1.08002 * 120.20150 * 179.79155 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7022 1.3463 0.0006 5 1 1.8835 2.3964 -1.2125 6 1 1.8834 2.3964 1.2124 7 6 2.0079 -1.2119 0.0005 8 1 3.0506 -1.2335 -0.2800 9 6 1.3496 -2.4084 0.3683 10 6 1.8196 -3.6487 -0.1037 11 6 1.1767 -4.8121 0.2566 12 6 0.0640 -4.7719 1.0780 13 6 -0.4147 -3.5493 1.5606 14 6 -1.6015 -3.5153 2.4423 15 8 -2.0197 -2.4524 2.8578 16 7 -2.2194 -4.6630 2.7851 17 6 -3.3948 -4.6294 3.6589 18 6 -3.8990 -6.0552 3.8905 19 1 -4.0853 -6.5353 2.9298 20 6 -2.8438 -6.8504 4.6619 21 6 -3.3483 -8.2761 4.8941 22 6 -4.6462 -8.2324 5.7030 23 6 -5.7014 -7.4372 4.9316 24 1 -5.8880 -7.9176 3.9711 25 8 -6.9135 -7.3959 5.6874 26 6 -5.1970 -6.0116 4.6995 27 6 0.2231 -2.3657 1.2067 28 1 -0.4851 0.8400 -0.0004 29 1 2.6849 -3.6878 -0.7489 30 1 1.5409 -5.7613 -0.1075 31 1 -0.4354 -5.6897 1.3512 32 1 -1.8854 -5.5113 2.4538 33 1 -3.1243 -4.1803 4.6147 34 1 -4.1803 -4.0377 3.1888 35 1 -1.9190 -6.8812 4.0858 36 1 -2.6576 -6.3703 5.6226 37 1 -3.5349 -8.7564 3.9336 38 1 -2.5964 -8.8427 5.4432 39 1 -5.0058 -9.2480 5.8680 40 1 -4.4597 -7.7521 6.6636 41 1 -7.2913 -8.2665 5.8728 42 1 -5.0103 -5.5313 5.6600 43 1 -5.9489 -5.4449 4.1503 44 1 -0.1450 -1.4192 1.5743 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357107760.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:38:27 Heat of formation + Delta-G solvation = -99.065787 kcal Electronic energy + Delta-G solvation = -24115.888003 eV Core-core repulsion = 20610.210087 eV Total energy + Delta-G solvation = -3505.677916 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.76841 -38.86014 -37.06257 -36.22087 -34.12600 -33.68279 -31.54031 -30.15563 -29.55206 -29.39964 -26.03001 -25.16000 -22.77615 -22.45318 -21.35240 -20.86527 -20.20037 -19.41633 -17.83312 -17.29022 -16.31284 -15.63150 -15.55567 -15.18306 -14.92070 -14.77730 -14.61885 -14.15905 -13.94951 -13.60626 -13.25121 -13.01871 -12.79113 -12.61154 -12.47659 -12.31621 -12.10321 -11.64452 -11.59487 -11.31547 -11.16441 -11.07845 -10.90895 -10.80363 -10.72146 -10.50487 -10.44664 -10.03152 -10.01823 -9.68747 -9.22227 -9.00735 -8.63063 -7.62703 -7.51803 -6.79727 -4.41399 2.21791 2.80828 3.08338 3.13142 3.14988 3.56767 3.88224 3.92787 3.99907 4.35661 4.39529 4.64511 4.71109 4.81181 4.90343 5.04040 5.11174 5.19190 5.25897 5.40074 5.59187 5.63252 5.64101 5.69778 5.79248 5.84594 5.89229 5.95518 5.97495 6.06236 6.13142 6.23481 6.27019 6.71668 6.88082 6.99197 7.02139 7.21316 7.33731 7.38162 7.70107 7.76192 7.92651 8.10535 8.19689 8.51016 8.80586 8.83598 8.97371 10.15122 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.027329 B = 0.002782 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.310840 B =10063.319029 C =10837.715254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.073 3.927 3 Si 0.910 3.090 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.271 1.271 7 C -0.460 4.460 8 H 0.081 0.919 9 C 0.098 3.902 10 C -0.211 4.211 11 C -0.098 4.098 12 C -0.218 4.218 13 C -0.128 4.128 14 C 0.563 3.437 15 O -0.546 6.546 16 N -0.736 5.736 17 C 0.127 3.873 18 C -0.095 4.095 19 H 0.079 0.921 20 C -0.119 4.119 21 C -0.117 4.117 22 C -0.151 4.151 23 C 0.106 3.894 24 H 0.055 0.945 25 O -0.569 6.569 26 C -0.105 4.105 27 C -0.092 4.092 28 H 0.284 0.716 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.398 0.602 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.071 0.929 41 H 0.376 0.624 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.437 -14.847 8.102 18.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.146 4.146 3 Si 0.734 3.266 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.196 1.196 7 C -0.489 4.489 8 H 0.100 0.900 9 C 0.096 3.904 10 C -0.231 4.231 11 C -0.117 4.117 12 C -0.238 4.238 13 C -0.131 4.131 14 C 0.353 3.647 15 O -0.424 6.424 16 N -0.390 5.390 17 C 0.003 3.997 18 C -0.114 4.114 19 H 0.097 0.903 20 C -0.157 4.157 21 C -0.154 4.154 22 C -0.189 4.189 23 C 0.047 3.953 24 H 0.073 0.927 25 O -0.374 6.374 26 C -0.143 4.143 27 C -0.112 4.112 28 H 0.095 0.905 29 H 0.114 0.886 30 H 0.111 0.889 31 H 0.107 0.893 32 H 0.234 0.766 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.223 0.777 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -8.846 -13.255 8.361 17.996 hybrid contribution 0.347 -0.396 -0.218 0.570 sum -8.499 -13.651 8.143 18.025 Atomic orbital electron populations 1.69795 1.07574 1.29681 1.33705 1.25968 0.94776 1.01563 0.92331 0.86237 0.80866 0.80839 0.78685 1.18346 1.19917 1.19556 1.19614 0.98081 0.90997 1.40170 0.90046 1.17610 0.91199 0.92486 0.89129 1.21105 1.03540 0.92804 1.05695 1.20431 0.96042 0.96714 0.98468 1.20323 1.01306 0.94625 1.07532 1.19483 0.96610 0.95317 1.01688 1.18844 0.83267 0.82837 0.79725 1.90696 1.66383 1.30105 1.55250 1.45948 1.31188 1.09743 1.52170 1.21225 0.88256 0.95411 0.94800 1.21328 0.94764 0.95771 0.99499 0.90299 1.21667 0.98203 0.94916 1.00916 1.21479 0.96533 0.97204 1.00226 1.22279 0.96312 1.00138 1.00194 1.21798 0.83628 0.96589 0.93269 0.92713 1.86531 1.40242 1.34298 1.76367 1.21419 0.96264 0.95368 1.01233 1.21636 0.96462 0.96432 0.96709 0.90485 0.88626 0.88930 0.89323 0.76626 0.91743 0.91700 0.91185 0.91413 0.91773 0.91527 0.91956 0.91073 0.77726 0.90807 0.90841 0.84877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.88 10.97 55.55 0.61 -20.27 16 2 C 0.07 1.85 5.14 -17.35 -0.09 1.76 16 3 Si 0.91 18.86 29.59 -169.99 -5.03 13.83 16 4 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 5 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 6 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 7 C -0.46 -12.11 9.05 -37.73 -0.34 -12.45 16 8 H 0.08 2.04 7.90 -52.48 -0.41 1.62 16 9 C 0.10 2.61 5.57 -106.88 -0.59 2.01 16 10 C -0.21 -5.02 9.78 -38.81 -0.38 -5.40 16 11 C -0.10 -2.08 10.01 -39.72 -0.40 -2.48 16 12 C -0.22 -4.54 9.55 -38.92 -0.37 -4.91 16 13 C -0.13 -3.02 5.87 -105.04 -0.62 -3.64 16 14 C 0.56 12.36 7.77 -12.31 -0.10 12.27 16 15 O -0.55 -13.88 16.33 5.33 0.09 -13.80 16 16 N -0.74 -12.00 5.23 -61.24 -0.32 -12.32 16 17 C 0.13 1.75 5.06 -4.04 -0.02 1.73 16 18 C -0.09 -0.95 2.23 -90.62 -0.20 -1.15 16 19 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 20 C -0.12 -1.10 5.08 -26.73 -0.14 -1.23 16 21 C -0.12 -0.87 5.92 -26.73 -0.16 -1.03 16 22 C -0.15 -1.09 5.55 -26.73 -0.15 -1.24 16 23 C 0.11 0.88 3.47 -26.74 -0.09 0.79 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 O -0.57 -5.05 13.32 -35.23 -0.47 -5.52 16 26 C -0.10 -1.02 4.85 -26.73 -0.13 -1.15 16 27 C -0.09 -2.47 8.23 -38.44 -0.32 -2.79 16 28 H 0.28 6.94 8.30 -40.82 -0.34 6.60 16 29 H 0.10 2.11 8.06 -52.48 -0.42 1.68 16 30 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 31 H 0.09 1.51 6.38 -52.49 -0.33 1.17 16 32 H 0.40 5.57 5.67 -40.82 -0.23 5.34 16 33 H 0.06 0.94 8.14 -51.92 -0.42 0.52 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.07 0.67 7.18 -51.93 -0.37 0.30 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.38 1.70 9.08 45.56 0.41 2.12 16 42 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.13 3.87 5.77 -52.49 -0.30 3.57 16 LS Contribution 355.85 15.07 5.36 5.36 Total: -1.00 -31.04 355.85 -9.72 -40.76 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: -5.87 Total: 10.86 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: -4.09 Total: -18.91 kcal Atomic # 7 Polarization: -32.88 SS G_CDS: 0.29 Total: -32.59 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -0.38 Total: -19.32 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.83 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.04 -9.72 -40.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357107760.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.305 kcal (2) G-P(sol) polarization free energy of solvation -31.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds