Wall clock time and date at job start Tue Mar 31 2020 08:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86798 * 120.00080 * 2 1 4 4 H 1.48496 * 109.47014 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46901 * 300.00002 * 3 2 1 6 6 H 1.48500 * 109.46952 * 59.99473 * 3 2 1 7 7 C 1.39933 * 119.99703 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99588 * 162.54646 * 7 2 1 9 9 C 1.41432 * 120.00569 * 342.55137 * 7 2 1 10 10 C 1.40782 * 120.18055 * 154.97928 * 9 7 2 11 11 C 1.37717 * 120.04437 * 179.97438 * 10 9 7 12 12 C 1.38366 * 120.40653 * 0.27862 * 11 10 9 13 13 C 1.39878 * 120.35994 * 359.49282 * 12 11 10 14 14 C 1.47888 * 120.02790 * 180.23300 * 13 12 11 15 15 O 1.21541 * 120.00446 * 180.24671 * 14 13 12 16 16 N 1.34777 * 119.99785 * 0.24880 * 14 13 12 17 17 C 1.46503 * 120.00218 * 179.97438 * 16 14 13 18 18 C 1.52994 * 109.47213 * 180.02562 * 17 16 14 19 19 H 1.09002 * 109.47423 * 304.99635 * 18 17 16 20 20 C 1.52998 * 109.47510 * 65.00046 * 18 17 16 21 21 C 1.53002 * 109.47332 * 179.97438 * 20 18 17 22 22 C 1.52996 * 109.47300 * 299.99997 * 21 20 18 23 23 C 1.52998 * 109.46925 * 59.99754 * 22 21 20 24 24 H 1.09002 * 109.47113 * 60.00686 * 23 22 21 25 25 O 1.42904 * 109.47296 * 180.02562 * 23 22 21 26 26 C 1.52994 * 109.47510 * 300.00085 * 23 22 21 27 27 C 1.39035 * 119.95012 * 0.48131 * 13 12 11 28 28 H 0.97002 * 120.00389 * 0.02562 * 1 2 3 29 29 H 1.08007 * 119.97995 * 359.97438 * 10 9 7 30 30 H 1.07993 * 119.79515 * 180.02562 * 11 10 9 31 31 H 1.08002 * 119.82126 * 179.73839 * 12 11 10 32 32 H 0.97004 * 119.99981 * 0.02562 * 16 14 13 33 33 H 1.09009 * 109.46994 * 300.00026 * 17 16 14 34 34 H 1.09001 * 109.47087 * 59.99784 * 17 16 14 35 35 H 1.09005 * 109.47140 * 299.99796 * 20 18 17 36 36 H 1.09000 * 109.47051 * 59.99941 * 20 18 17 37 37 H 1.09000 * 109.46985 * 60.00042 * 21 20 18 38 38 H 1.08997 * 109.47133 * 179.97438 * 21 20 18 39 39 H 1.08998 * 109.46990 * 179.97438 * 22 21 20 40 40 H 1.09000 * 109.47138 * 299.99951 * 22 21 20 41 41 H 0.96705 * 114.00013 * 300.00766 * 25 23 22 42 42 H 1.09002 * 109.47423 * 300.00411 * 26 23 22 43 43 H 1.09004 * 109.47789 * 180.02562 * 26 23 22 44 44 H 1.08002 * 120.20150 * 179.79155 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7022 1.3463 0.0006 5 1 1.8835 2.3964 -1.2125 6 1 1.8834 2.3964 1.2124 7 6 2.0079 -1.2119 0.0005 8 1 3.0506 -1.2335 -0.2800 9 6 1.3496 -2.4084 0.3683 10 6 1.8196 -3.6487 -0.1037 11 6 1.1767 -4.8121 0.2566 12 6 0.0640 -4.7719 1.0780 13 6 -0.4147 -3.5493 1.5606 14 6 -1.6015 -3.5153 2.4423 15 8 -2.0197 -2.4524 2.8578 16 7 -2.2194 -4.6630 2.7851 17 6 -3.3948 -4.6294 3.6589 18 6 -3.8990 -6.0552 3.8905 19 1 -4.0853 -6.5353 2.9298 20 6 -2.8438 -6.8504 4.6619 21 6 -3.3483 -8.2761 4.8941 22 6 -4.6462 -8.2324 5.7030 23 6 -5.7014 -7.4372 4.9316 24 1 -5.8880 -7.9176 3.9711 25 8 -6.9135 -7.3959 5.6874 26 6 -5.1970 -6.0116 4.6995 27 6 0.2231 -2.3657 1.2067 28 1 -0.4851 0.8400 -0.0004 29 1 2.6849 -3.6878 -0.7489 30 1 1.5409 -5.7613 -0.1075 31 1 -0.4354 -5.6897 1.3512 32 1 -1.8854 -5.5113 2.4538 33 1 -3.1243 -4.1803 4.6147 34 1 -4.1803 -4.0377 3.1888 35 1 -1.9190 -6.8812 4.0858 36 1 -2.6576 -6.3703 5.6226 37 1 -3.5349 -8.7564 3.9336 38 1 -2.5964 -8.8427 5.4432 39 1 -5.0058 -9.2480 5.8680 40 1 -4.4597 -7.7521 6.6636 41 1 -7.2913 -8.2665 5.8728 42 1 -5.0103 -5.5313 5.6600 43 1 -5.9489 -5.4449 4.1503 44 1 -0.1450 -1.4192 1.5743 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357107760.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:38:26 Heat of formation + Delta-G solvation = -119.763496 kcal Electronic energy + Delta-G solvation = -24116.785523 eV Core-core repulsion = 20610.210087 eV Total energy + Delta-G solvation = -3506.575436 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.06911 -40.01680 -38.79724 -37.15037 -35.66885 -35.23028 -32.70550 -31.64187 -31.25885 -30.36860 -27.45696 -26.76440 -24.10258 -23.34064 -22.82979 -22.21667 -21.29717 -20.72535 -19.51779 -18.20439 -17.79869 -17.15717 -16.80628 -16.48966 -16.42710 -16.12119 -15.50401 -15.39000 -15.10146 -15.02927 -14.75894 -14.35993 -14.25556 -13.90700 -13.62682 -13.43856 -13.22792 -12.99643 -12.92414 -12.79418 -12.54060 -12.34276 -12.17415 -12.00704 -11.89704 -11.63764 -11.52125 -11.49976 -11.17279 -11.08727 -10.78659 -10.65955 -10.14842 -9.46549 -9.37921 -8.66728 -6.38421 0.38086 1.00514 1.35930 1.46241 1.52271 2.10034 2.18909 2.22731 2.78759 3.25740 3.60172 3.68140 3.70677 4.02385 4.03822 4.10492 4.23476 4.26788 4.42948 4.44764 4.46565 4.57706 4.60083 4.64422 4.70886 4.79175 4.92670 5.06812 5.09035 5.13548 5.18380 5.19682 5.20819 5.26666 5.31432 5.32881 5.45026 5.51696 5.53943 5.86918 5.92630 6.05619 6.28917 6.51612 6.69272 6.88001 6.92541 6.94867 7.31431 8.30318 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.027329 B = 0.002782 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.310840 B =10063.319029 C =10837.715254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.028 3.972 3 Si 0.983 3.017 4 H -0.251 1.251 5 H -0.264 1.264 6 H -0.271 1.271 7 C -0.497 4.497 8 H 0.084 0.916 9 C 0.066 3.934 10 C -0.216 4.216 11 C -0.096 4.096 12 C -0.195 4.195 13 C -0.139 4.139 14 C 0.558 3.442 15 O -0.592 6.592 16 N -0.709 5.709 17 C 0.125 3.875 18 C -0.080 4.080 19 H 0.094 0.906 20 C -0.120 4.120 21 C -0.112 4.112 22 C -0.147 4.147 23 C 0.108 3.892 24 H 0.067 0.933 25 O -0.589 6.589 26 C -0.107 4.107 27 C -0.132 4.132 28 H 0.286 0.714 29 H 0.109 0.891 30 H 0.141 0.859 31 H 0.138 0.862 32 H 0.413 0.587 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.070 0.930 36 H 0.057 0.943 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.059 0.941 41 H 0.395 0.605 42 H 0.061 0.939 43 H 0.064 0.936 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.344 -18.310 8.028 21.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.187 4.187 3 Si 0.803 3.197 4 H -0.174 1.174 5 H -0.188 1.188 6 H -0.197 1.197 7 C -0.526 4.526 8 H 0.102 0.898 9 C 0.064 3.936 10 C -0.236 4.236 11 C -0.113 4.113 12 C -0.214 4.214 13 C -0.142 4.142 14 C 0.348 3.652 15 O -0.474 6.474 16 N -0.362 5.362 17 C 0.001 3.999 18 C -0.098 4.098 19 H 0.112 0.888 20 C -0.158 4.158 21 C -0.150 4.150 22 C -0.185 4.185 23 C 0.050 3.950 24 H 0.085 0.915 25 O -0.398 6.398 26 C -0.145 4.145 27 C -0.153 4.153 28 H 0.096 0.904 29 H 0.127 0.873 30 H 0.158 0.842 31 H 0.156 0.844 32 H 0.252 0.748 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.101 0.899 40 H 0.078 0.922 41 H 0.244 0.756 42 H 0.080 0.920 43 H 0.083 0.917 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -8.762 -16.805 8.289 20.685 hybrid contribution 0.232 0.455 -0.140 0.529 sum -8.529 -16.350 8.148 20.161 Atomic orbital electron populations 1.69897 1.09259 1.30501 1.35569 1.26864 0.95416 1.05006 0.91386 0.85153 0.79689 0.76118 0.78739 1.17362 1.18837 1.19654 1.19882 0.98427 0.92161 1.42167 0.89782 1.17957 0.91795 0.94013 0.89871 1.21427 1.03932 0.92814 1.05392 1.20938 0.95303 0.97716 0.97382 1.20855 1.00459 0.95091 1.05038 1.19786 0.96993 0.95610 1.01854 1.18779 0.83229 0.83614 0.79594 1.90672 1.67566 1.32152 1.57004 1.45710 1.30847 1.08619 1.51031 1.21395 0.86798 0.98195 0.93473 1.21213 0.95059 0.93044 1.00524 0.88764 1.21679 0.97817 0.96062 1.00229 1.21457 0.96685 0.95777 1.01042 1.22239 0.95912 1.00932 0.99382 1.21761 0.83873 0.95353 0.94061 0.91465 1.86483 1.40538 1.36264 1.76502 1.21404 0.95901 0.96759 1.00414 1.21437 0.98374 0.96400 0.99064 0.90372 0.87315 0.84169 0.84405 0.74812 0.92797 0.92857 0.91167 0.92385 0.90530 0.90649 0.89928 0.92192 0.75553 0.91974 0.91710 0.88543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.82 10.97 21.82 0.24 -46.58 16 2 C 0.03 1.48 5.14 85.25 0.44 1.92 16 3 Si 0.98 40.18 29.59 68.60 2.03 42.21 16 4 H -0.25 -9.72 7.11 99.48 0.71 -9.01 16 5 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 6 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 7 C -0.50 -27.30 9.05 23.47 0.21 -27.09 16 8 H 0.08 4.35 7.90 -2.91 -0.02 4.33 16 9 C 0.07 3.60 5.57 -21.32 -0.12 3.49 16 10 C -0.22 -10.04 9.78 22.77 0.22 -9.82 16 11 C -0.10 -3.71 10.01 22.18 0.22 -3.49 16 12 C -0.19 -7.49 9.55 22.70 0.22 -7.28 16 13 C -0.14 -6.60 5.87 -20.13 -0.12 -6.72 16 14 C 0.56 24.79 7.77 86.80 0.67 25.47 16 15 O -0.59 -31.58 16.33 -3.85 -0.06 -31.64 16 16 N -0.71 -22.11 5.23 -465.93 -2.44 -24.55 16 17 C 0.12 3.37 5.06 86.38 0.44 3.81 16 18 C -0.08 -1.43 2.23 -10.80 -0.02 -1.45 16 19 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 20 C -0.12 -1.90 5.08 30.59 0.16 -1.74 16 21 C -0.11 -1.27 5.92 30.59 0.18 -1.09 16 22 C -0.15 -1.68 5.55 30.59 0.17 -1.51 16 23 C 0.11 1.53 3.47 30.59 0.11 1.63 16 24 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 25 O -0.59 -9.27 13.32 -148.98 -1.98 -11.26 16 26 C -0.11 -1.94 4.85 30.59 0.15 -1.79 16 27 C -0.13 -7.42 8.23 23.01 0.19 -7.23 16 28 H 0.29 14.91 8.30 -92.71 -0.77 14.14 16 29 H 0.11 4.66 8.06 -2.91 -0.02 4.63 16 30 H 0.14 4.17 8.06 -2.91 -0.02 4.14 16 31 H 0.14 3.90 6.38 -2.91 -0.02 3.88 16 32 H 0.41 10.13 5.67 -92.70 -0.53 9.61 16 33 H 0.05 1.59 8.14 -2.38 -0.02 1.58 16 34 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.07 1.11 7.18 -2.38 -0.02 1.09 16 36 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.39 2.59 9.08 -74.05 -0.67 1.92 16 42 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.10 6.07 5.77 -2.91 -0.02 6.05 16 Total: -1.00 -72.67 355.85 0.71 -71.96 By element: Atomic # 1 Polarization: 32.94 SS G_CDS: -0.18 Total: 32.75 kcal Atomic # 6 Polarization: -36.00 SS G_CDS: 3.11 Total: -32.89 kcal Atomic # 7 Polarization: -68.93 SS G_CDS: -2.20 Total: -71.13 kcal Atomic # 8 Polarization: -40.85 SS G_CDS: -2.05 Total: -42.90 kcal Atomic # 14 Polarization: 40.18 SS G_CDS: 2.03 Total: 42.21 kcal Total: -72.67 0.71 -71.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357107760.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.807 kcal (2) G-P(sol) polarization free energy of solvation -72.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds