Wall clock time and date at job start Tue Mar 31 2020 07:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86794 * 120.00031 * 2 1 4 4 H 1.48507 * 109.47118 * 239.99411 * 3 2 1 5 5 H 1.48493 * 109.47363 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47069 * 120.00133 * 3 2 1 7 7 C 1.37885 * 119.99838 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99939 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00006 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47295 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47521 * 180.02562 * 10 9 7 12 12 N 1.46502 * 109.47114 * 180.02562 * 11 10 9 13 13 C 1.34777 * 119.99876 * 180.02562 * 12 11 10 14 14 O 1.21282 * 119.99907 * 359.97438 * 13 12 11 15 15 C 1.50694 * 120.00157 * 179.97438 * 13 12 11 16 16 O 1.42901 * 109.47303 * 179.97438 * 15 13 12 17 17 C 1.42906 * 113.99809 * 179.97438 * 16 15 13 18 18 C 1.50698 * 109.46616 * 180.02562 * 17 16 15 19 19 C 1.32568 * 119.99964 * 135.00183 * 18 17 16 20 20 C 1.47818 * 120.00099 * 179.97438 * 19 18 17 21 21 C 1.39530 * 120.13805 * 179.97438 * 20 19 18 22 22 C 1.37975 * 119.85264 * 179.97438 * 21 20 19 23 23 C 1.38345 * 120.14230 * 0.02562 * 22 21 20 24 24 C 1.38342 * 120.28567 * 359.97438 * 23 22 21 25 25 C 1.37970 * 120.14109 * 0.02562 * 24 23 22 26 26 H 0.96996 * 120.00142 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.47251 * 60.00681 * 9 7 2 28 28 H 1.08996 * 109.47408 * 300.00485 * 9 7 2 29 29 H 1.09001 * 109.47001 * 59.99798 * 10 9 7 30 30 H 1.09008 * 109.47143 * 300.00809 * 10 9 7 31 31 H 1.08997 * 109.46940 * 59.99766 * 11 10 9 32 32 H 1.08998 * 109.47003 * 299.99656 * 11 10 9 33 33 H 0.96998 * 120.00054 * 359.97438 * 12 11 10 34 34 H 1.09001 * 109.47127 * 59.99279 * 15 13 12 35 35 H 1.09004 * 109.47350 * 299.99748 * 15 13 12 36 36 H 1.08996 * 109.47160 * 60.00267 * 17 16 15 37 37 H 1.09003 * 109.47341 * 300.00150 * 17 16 15 38 38 H 1.08001 * 120.00191 * 314.99432 * 18 17 16 39 39 H 1.08001 * 119.99850 * 359.97438 * 19 18 17 40 40 H 1.08001 * 120.07796 * 0.02562 * 21 20 19 41 41 H 1.08003 * 119.92978 * 179.72663 * 22 21 20 42 42 H 1.08000 * 119.85265 * 179.97438 * 23 22 21 43 43 H 1.08003 * 119.92532 * 179.97438 * 24 23 22 44 44 H 1.08004 * 120.06942 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2451 -3.6622 0.0027 11 6 1.4802 -4.9872 0.0033 12 7 2.4322 -6.1007 0.0049 13 6 1.9829 -7.3714 0.0051 14 8 0.7905 -7.5930 0.0044 15 6 2.9621 -8.5168 0.0062 16 8 2.2476 -9.7543 0.0068 17 6 3.0876 -10.9105 0.0073 18 6 2.2334 -12.1519 0.0073 19 6 2.5267 -13.1583 -0.8043 20 6 1.6891 -14.3763 -0.8039 21 6 1.9948 -15.4371 -1.6572 22 6 1.2094 -16.5714 -1.6516 23 6 0.1204 -16.6581 -0.8028 24 6 -0.1881 -15.6099 0.0457 25 6 0.5894 -14.4701 0.0498 26 1 -0.4850 0.8400 -0.0004 27 1 0.6240 -2.5576 -0.8881 28 1 0.6246 -2.5563 0.8919 29 1 2.8718 -3.6036 0.8927 30 1 2.8719 -3.6052 -0.8873 31 1 0.8538 -5.0454 -0.8868 32 1 0.8533 -5.0444 0.8931 33 1 3.3858 -5.9234 0.0051 34 1 3.5883 -8.4587 0.8965 35 1 3.5894 -8.4595 -0.8835 36 1 3.7169 -10.9020 0.8972 37 1 3.7169 -10.9028 -0.8828 38 1 1.3823 -12.2218 0.6684 39 1 3.3776 -13.0883 -1.4657 40 1 2.8450 -15.3708 -2.3201 41 1 1.4423 -17.3914 -2.3148 42 1 -0.4915 -17.5480 -0.8026 43 1 -1.0398 -15.6836 0.7056 44 1 0.3478 -13.6526 0.7129 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357194387.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:45:07 Heat of formation + Delta-G solvation = -58.142626 kcal Electronic energy + Delta-G solvation = -21920.521835 eV Core-core repulsion = 18416.618481 eV Total energy + Delta-G solvation = -3503.903355 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.70608 -39.51795 -37.90326 -35.41352 -34.87880 -33.33443 -31.43490 -31.33618 -30.78987 -28.57077 -26.51817 -25.57605 -23.30205 -22.97487 -22.29613 -20.79970 -20.20150 -19.65379 -17.71188 -17.05930 -16.91740 -16.52309 -16.25112 -15.80198 -15.29226 -15.20430 -15.00297 -14.53656 -14.41443 -14.03138 -13.77402 -13.65104 -13.33398 -13.17979 -12.61035 -12.50776 -12.28578 -11.86285 -11.76828 -11.66267 -11.45737 -11.19793 -10.89302 -10.74741 -10.68107 -10.63529 -9.99856 -9.87964 -9.84772 -9.37364 -9.32342 -9.13815 -8.81433 -8.50051 -8.37749 -6.02358 -4.05791 0.51245 1.03978 2.03553 2.72232 2.89343 3.31411 3.36409 3.38099 3.55413 3.86798 4.40061 4.40654 4.43924 4.59708 4.68103 4.70135 4.80635 4.88947 4.92375 4.96008 5.03916 5.06019 5.15911 5.23059 5.33278 5.57980 5.65005 5.69194 5.76097 5.89379 6.02608 6.14285 6.14645 6.20211 6.39830 6.44325 6.57866 6.61166 6.72246 6.85118 6.98381 7.62269 7.66397 7.74944 7.96004 8.34676 8.38511 9.00620 9.58382 11.08853 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.048529 B = 0.001477 C = 0.001451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.841221 B =18948.900825 C =19294.067903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.023 3.977 10 C -0.121 4.121 11 C 0.118 3.882 12 N -0.725 5.725 13 C 0.507 3.493 14 O -0.523 6.523 15 C 0.044 3.956 16 O -0.358 6.358 17 C 0.089 3.911 18 C -0.133 4.133 19 C -0.113 4.113 20 C -0.054 4.054 21 C -0.110 4.110 22 C -0.121 4.121 23 C -0.122 4.122 24 C -0.118 4.118 25 C -0.113 4.113 26 H 0.262 0.738 27 H 0.019 0.981 28 H 0.019 0.981 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.398 0.602 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.065 0.935 37 H 0.058 0.942 38 H 0.124 0.876 39 H 0.121 0.879 40 H 0.124 0.876 41 H 0.122 0.878 42 H 0.121 0.879 43 H 0.124 0.876 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.256 -32.465 -1.020 33.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.563 4.563 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.159 4.159 11 C -0.005 4.005 12 N -0.378 5.378 13 C 0.291 3.709 14 O -0.398 6.398 15 C -0.036 4.036 16 O -0.276 6.276 17 C 0.013 3.987 18 C -0.151 4.151 19 C -0.131 4.131 20 C -0.054 4.054 21 C -0.128 4.128 22 C -0.139 4.139 23 C -0.140 4.140 24 C -0.136 4.136 25 C -0.131 4.131 26 H 0.071 0.929 27 H 0.038 0.962 28 H 0.038 0.962 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.232 0.768 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.141 0.859 39 H 0.139 0.861 40 H 0.142 0.858 41 H 0.140 0.860 42 H 0.139 0.861 43 H 0.142 0.858 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 7.001 -32.516 -1.021 33.277 hybrid contribution 1.220 1.074 -0.011 1.626 sum 8.221 -31.442 -1.033 32.515 Atomic orbital electron populations 1.69952 1.06064 1.26823 1.50365 1.25027 0.94854 0.99290 0.95235 0.86637 0.79558 0.83092 0.78571 1.20254 1.21255 1.20249 1.21164 0.92948 0.90954 1.51198 0.92694 1.19030 0.93860 0.90817 0.97715 1.21895 0.99790 0.93275 1.00901 1.21667 0.91807 0.84838 1.02152 1.46100 1.10917 1.05514 1.75286 1.20176 0.89563 0.83784 0.77367 1.90738 1.16608 1.84512 1.47956 1.22244 0.94135 0.84654 1.02561 1.88062 1.32108 1.12019 1.95446 1.21496 0.92292 0.84093 1.00852 1.23107 0.99927 0.93115 0.98932 1.21593 0.99360 0.93108 0.99057 1.19024 0.95507 0.94087 0.96808 1.21271 0.99800 0.93099 0.98647 1.21104 0.95573 0.97989 0.99218 1.21240 0.97511 0.98855 0.96406 1.21128 0.99659 0.93625 0.99170 1.21402 0.94738 0.98212 0.98757 0.92853 0.96231 0.96241 0.92676 0.92683 0.91653 0.91660 0.76792 0.90232 0.90246 0.91739 0.92363 0.85850 0.86118 0.85826 0.85952 0.86082 0.85840 0.85517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.75 13.29 55.43 0.74 -26.02 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 7 C -0.52 -14.57 9.11 -34.44 -0.31 -14.88 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 10 C -0.12 -2.32 5.27 -26.73 -0.14 -2.46 16 11 C 0.12 2.06 5.67 -4.04 -0.02 2.04 16 12 N -0.73 -10.06 5.56 -60.30 -0.33 -10.40 16 13 C 0.51 7.59 7.91 -10.99 -0.09 7.50 16 14 O -0.52 -10.50 16.50 -14.36 -0.24 -10.74 16 15 C 0.04 0.45 6.42 36.00 0.23 0.69 16 16 O -0.36 -4.46 9.86 -55.14 -0.54 -5.00 16 17 C 0.09 0.74 6.36 36.00 0.23 0.97 16 18 C -0.13 -1.15 9.31 -36.22 -0.34 -1.49 16 19 C -0.11 -0.89 9.51 -37.57 -0.36 -1.25 16 20 C -0.05 -0.46 5.87 -105.02 -0.62 -1.08 16 21 C -0.11 -0.82 9.79 -39.20 -0.38 -1.20 16 22 C -0.12 -0.82 10.03 -39.64 -0.40 -1.22 16 23 C -0.12 -0.84 10.04 -39.50 -0.40 -1.24 16 24 C -0.12 -0.89 10.03 -39.64 -0.40 -1.28 16 25 C -0.11 -0.96 9.40 -39.20 -0.37 -1.33 16 26 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 27 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.05 1.01 8.14 -51.92 -0.42 0.59 16 31 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 32 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.40 4.14 8.47 -40.82 -0.35 3.80 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.38 7.88 -51.93 -0.41 -0.03 16 38 H 0.12 1.11 6.04 -52.49 -0.32 0.79 16 39 H 0.12 0.73 7.92 -52.49 -0.42 0.31 16 40 H 0.12 0.68 8.06 -52.49 -0.42 0.25 16 41 H 0.12 0.57 8.06 -52.48 -0.42 0.15 16 42 H 0.12 0.58 8.06 -52.49 -0.42 0.16 16 43 H 0.12 0.70 8.06 -52.48 -0.42 0.28 16 44 H 0.13 0.98 6.17 -52.48 -0.32 0.65 16 LS Contribution 379.24 15.07 5.72 5.72 Total: -1.00 -34.96 379.24 -10.13 -45.09 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -6.85 Total: -0.77 kcal Atomic # 6 Polarization: -10.65 SS G_CDS: -3.60 Total: -14.24 kcal Atomic # 7 Polarization: -36.82 SS G_CDS: 0.40 Total: -36.42 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: -0.78 Total: -15.74 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.96 -10.13 -45.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357194387.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.051 kcal (2) G-P(sol) polarization free energy of solvation -34.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds