Wall clock time and date at job start Tue Mar 31 2020 07:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86794 * 120.00031 * 2 1 4 4 H 1.48507 * 109.47118 * 239.99411 * 3 2 1 5 5 H 1.48493 * 109.47363 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47069 * 120.00133 * 3 2 1 7 7 C 1.37885 * 119.99838 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99939 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00006 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47295 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47521 * 180.02562 * 10 9 7 12 12 N 1.46502 * 109.47114 * 180.02562 * 11 10 9 13 13 C 1.34777 * 119.99876 * 180.02562 * 12 11 10 14 14 O 1.21282 * 119.99907 * 359.97438 * 13 12 11 15 15 C 1.50694 * 120.00157 * 179.97438 * 13 12 11 16 16 O 1.42901 * 109.47303 * 179.97438 * 15 13 12 17 17 C 1.42906 * 113.99809 * 179.97438 * 16 15 13 18 18 C 1.50698 * 109.46616 * 180.02562 * 17 16 15 19 19 C 1.32568 * 119.99964 * 135.00183 * 18 17 16 20 20 C 1.47818 * 120.00099 * 179.97438 * 19 18 17 21 21 C 1.39530 * 120.13805 * 179.97438 * 20 19 18 22 22 C 1.37975 * 119.85264 * 179.97438 * 21 20 19 23 23 C 1.38345 * 120.14230 * 0.02562 * 22 21 20 24 24 C 1.38342 * 120.28567 * 359.97438 * 23 22 21 25 25 C 1.37970 * 120.14109 * 0.02562 * 24 23 22 26 26 H 0.96996 * 120.00142 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.47251 * 60.00681 * 9 7 2 28 28 H 1.08996 * 109.47408 * 300.00485 * 9 7 2 29 29 H 1.09001 * 109.47001 * 59.99798 * 10 9 7 30 30 H 1.09008 * 109.47143 * 300.00809 * 10 9 7 31 31 H 1.08997 * 109.46940 * 59.99766 * 11 10 9 32 32 H 1.08998 * 109.47003 * 299.99656 * 11 10 9 33 33 H 0.96998 * 120.00054 * 359.97438 * 12 11 10 34 34 H 1.09001 * 109.47127 * 59.99279 * 15 13 12 35 35 H 1.09004 * 109.47350 * 299.99748 * 15 13 12 36 36 H 1.08996 * 109.47160 * 60.00267 * 17 16 15 37 37 H 1.09003 * 109.47341 * 300.00150 * 17 16 15 38 38 H 1.08001 * 120.00191 * 314.99432 * 18 17 16 39 39 H 1.08001 * 119.99850 * 359.97438 * 19 18 17 40 40 H 1.08001 * 120.07796 * 0.02562 * 21 20 19 41 41 H 1.08003 * 119.92978 * 179.72663 * 22 21 20 42 42 H 1.08000 * 119.85265 * 179.97438 * 23 22 21 43 43 H 1.08003 * 119.92532 * 179.97438 * 24 23 22 44 44 H 1.08004 * 120.06942 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2451 -3.6622 0.0027 11 6 1.4802 -4.9872 0.0033 12 7 2.4322 -6.1007 0.0049 13 6 1.9829 -7.3714 0.0051 14 8 0.7905 -7.5930 0.0044 15 6 2.9621 -8.5168 0.0062 16 8 2.2476 -9.7543 0.0068 17 6 3.0876 -10.9105 0.0073 18 6 2.2334 -12.1519 0.0073 19 6 2.5267 -13.1583 -0.8043 20 6 1.6891 -14.3763 -0.8039 21 6 1.9948 -15.4371 -1.6572 22 6 1.2094 -16.5714 -1.6516 23 6 0.1204 -16.6581 -0.8028 24 6 -0.1881 -15.6099 0.0457 25 6 0.5894 -14.4701 0.0498 26 1 -0.4850 0.8400 -0.0004 27 1 0.6240 -2.5576 -0.8881 28 1 0.6246 -2.5563 0.8919 29 1 2.8718 -3.6036 0.8927 30 1 2.8719 -3.6052 -0.8873 31 1 0.8538 -5.0454 -0.8868 32 1 0.8533 -5.0444 0.8931 33 1 3.3858 -5.9234 0.0051 34 1 3.5883 -8.4587 0.8965 35 1 3.5894 -8.4595 -0.8835 36 1 3.7169 -10.9020 0.8972 37 1 3.7169 -10.9028 -0.8828 38 1 1.3823 -12.2218 0.6684 39 1 3.3776 -13.0883 -1.4657 40 1 2.8450 -15.3708 -2.3201 41 1 1.4423 -17.3914 -2.3148 42 1 -0.4915 -17.5480 -0.8026 43 1 -1.0398 -15.6836 0.7056 44 1 0.3478 -13.6526 0.7129 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357194387.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:45:06 Heat of formation + Delta-G solvation = -79.175569 kcal Electronic energy + Delta-G solvation = -21921.433892 eV Core-core repulsion = 18416.618481 eV Total energy + Delta-G solvation = -3504.815411 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.82243 -40.10041 -38.75071 -36.93253 -35.50975 -35.19830 -33.13437 -31.89279 -31.45260 -29.74152 -27.95438 -26.41448 -24.73189 -23.85489 -22.85020 -22.32631 -21.51324 -20.33721 -18.58566 -18.39163 -17.94919 -17.62619 -17.32925 -16.64951 -16.47580 -16.36368 -16.13662 -15.78629 -15.36548 -15.15202 -14.67264 -14.26322 -14.24663 -14.00257 -13.89176 -13.76812 -13.60383 -13.26844 -13.11973 -12.70344 -12.55115 -12.41405 -12.33498 -11.98929 -11.74821 -11.66518 -11.57922 -11.29272 -11.24774 -10.81505 -10.67176 -10.54237 -10.12678 -9.87412 -9.07699 -8.18693 -6.30593 -0.06429 0.48864 1.42353 1.43775 1.45618 1.53528 1.57564 1.93202 2.42911 2.96222 3.09484 3.15080 3.72096 3.85195 3.86664 4.09797 4.16894 4.18699 4.19781 4.21901 4.27047 4.31745 4.41409 4.47099 4.53883 4.54931 4.62233 4.68527 4.94176 4.98672 5.05664 5.12937 5.17559 5.34482 5.40943 5.45703 5.52701 5.60570 5.62612 5.70865 5.83282 5.84522 6.07264 6.10978 6.22492 6.59387 6.87006 7.25202 7.39203 8.93205 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.048529 B = 0.001477 C = 0.001451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.841221 B =18948.900825 C =19294.067903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.003 4.003 3 Si 0.968 3.032 4 H -0.265 1.265 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.543 4.543 8 H 0.068 0.932 9 C 0.022 3.978 10 C -0.101 4.101 11 C 0.130 3.870 12 N -0.710 5.710 13 C 0.501 3.499 14 O -0.584 6.584 15 C 0.052 3.948 16 O -0.399 6.399 17 C 0.089 3.911 18 C -0.153 4.153 19 C -0.106 4.106 20 C -0.076 4.076 21 C -0.117 4.117 22 C -0.127 4.127 23 C -0.128 4.128 24 C -0.131 4.131 25 C -0.134 4.134 26 H 0.263 0.737 27 H -0.009 1.009 28 H -0.009 1.009 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.420 0.580 34 H 0.116 0.884 35 H 0.116 0.884 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.108 0.892 39 H 0.142 0.858 40 H 0.143 0.857 41 H 0.146 0.854 42 H 0.142 0.858 43 H 0.135 0.865 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.460 -33.383 -1.575 35.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.792 3.208 4 H -0.190 1.190 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.581 4.581 8 H 0.087 0.913 9 C -0.016 4.016 10 C -0.138 4.138 11 C 0.006 3.994 12 N -0.364 5.364 13 C 0.288 3.712 14 O -0.464 6.464 15 C -0.027 4.027 16 O -0.318 6.318 17 C 0.013 3.987 18 C -0.171 4.171 19 C -0.124 4.124 20 C -0.076 4.076 21 C -0.135 4.135 22 C -0.145 4.145 23 C -0.146 4.146 24 C -0.149 4.149 25 C -0.152 4.152 26 H 0.071 0.929 27 H 0.009 0.991 28 H 0.009 0.991 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.257 0.743 34 H 0.134 0.866 35 H 0.133 0.867 36 H 0.102 0.898 37 H 0.098 0.902 38 H 0.126 0.874 39 H 0.160 0.840 40 H 0.161 0.839 41 H 0.163 0.837 42 H 0.160 0.840 43 H 0.153 0.847 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 10.275 -33.447 -1.574 35.025 hybrid contribution 0.172 1.260 0.154 1.281 sum 10.447 -32.187 -1.420 33.870 Atomic orbital electron populations 1.70110 1.08013 1.27845 1.51605 1.26037 0.95723 1.03606 0.94736 0.85456 0.78165 0.77848 0.79297 1.18972 1.21273 1.18960 1.21666 0.93820 0.91955 1.50611 0.91339 1.18959 0.94526 0.93127 0.95005 1.21596 0.98391 0.91467 1.02390 1.21229 0.92042 0.85622 1.00546 1.45825 1.11418 1.04515 1.74629 1.21158 0.89674 0.84845 0.75514 1.90715 1.19549 1.85380 1.50716 1.22321 0.92494 0.82033 1.05898 1.88011 1.34453 1.13489 1.95872 1.21673 0.91937 0.82246 1.02805 1.23151 1.00295 0.94100 0.99590 1.21786 0.99517 0.92479 0.98596 1.19278 0.95911 0.94973 0.97473 1.21575 1.00470 0.92897 0.98554 1.21460 0.95228 0.98487 0.99307 1.21572 0.97801 0.99291 0.95922 1.21381 1.00069 0.93676 0.99775 1.21567 0.95524 0.98723 0.99353 0.92854 0.99075 0.99075 0.91047 0.91062 0.93459 0.93446 0.74258 0.86636 0.86667 0.89785 0.90152 0.87369 0.84025 0.83916 0.83655 0.84034 0.84669 0.85929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.30 13.29 21.45 0.28 -57.02 16 2 C 0.00 -0.19 5.46 84.66 0.46 0.27 16 3 Si 0.97 43.52 29.54 68.60 2.03 45.55 16 4 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 5 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 7 C -0.54 -30.11 9.11 25.60 0.23 -29.87 16 8 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 9 C 0.02 1.12 4.97 29.85 0.15 1.27 16 10 C -0.10 -3.79 5.27 30.59 0.16 -3.63 16 11 C 0.13 4.58 5.67 86.38 0.49 5.07 16 12 N -0.71 -18.61 5.56 -463.07 -2.57 -21.19 16 13 C 0.50 14.54 7.91 87.65 0.69 15.23 16 14 O -0.58 -24.11 16.50 16.00 0.26 -23.85 16 15 C 0.05 0.92 6.42 71.23 0.46 1.37 16 16 O -0.40 -9.42 9.86 -129.94 -1.28 -10.70 16 17 C 0.09 1.29 6.36 71.24 0.45 1.75 16 18 C -0.15 -2.61 9.31 24.53 0.23 -2.38 16 19 C -0.11 -1.57 9.51 23.65 0.22 -1.34 16 20 C -0.08 -1.28 5.87 -20.12 -0.12 -1.40 16 21 C -0.12 -1.59 9.79 22.52 0.22 -1.37 16 22 C -0.13 -1.54 10.03 22.23 0.22 -1.31 16 23 C -0.13 -1.63 10.04 22.32 0.22 -1.41 16 24 C -0.13 -1.98 10.03 22.23 0.22 -1.75 16 25 C -0.13 -2.36 9.40 22.52 0.21 -2.15 16 26 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 27 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 28 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 29 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 30 H 0.07 2.47 8.14 -2.38 -0.02 2.45 16 31 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.42 7.40 8.47 -92.71 -0.79 6.62 16 34 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.12 1.25 8.14 -2.38 -0.02 1.23 16 36 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.08 0.79 7.88 -2.39 -0.02 0.78 16 38 H 0.11 2.10 6.04 -2.91 -0.02 2.08 16 39 H 0.14 1.40 7.92 -2.91 -0.02 1.37 16 40 H 0.14 1.27 8.06 -2.91 -0.02 1.24 16 41 H 0.15 1.00 8.06 -2.91 -0.02 0.98 16 42 H 0.14 1.12 8.06 -2.91 -0.02 1.10 16 43 H 0.14 1.56 8.06 -2.91 -0.02 1.53 16 44 H 0.12 2.12 6.17 -2.91 -0.02 2.10 16 Total: -1.00 -79.15 379.24 3.45 -75.70 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: 0.20 Total: 13.16 kcal Atomic # 6 Polarization: -26.19 SS G_CDS: 4.54 Total: -21.66 kcal Atomic # 7 Polarization: -75.92 SS G_CDS: -2.29 Total: -78.21 kcal Atomic # 8 Polarization: -33.53 SS G_CDS: -1.02 Total: -34.55 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -79.15 3.45 -75.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357194387.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.476 kcal (2) G-P(sol) polarization free energy of solvation -79.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds