Wall clock time and date at job start Tue Mar 31 2020 08:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00180 * 2 1 4 4 H 1.48498 * 109.47052 * 269.99580 * 3 2 1 5 5 H 1.48497 * 109.47590 * 30.00006 * 3 2 1 6 6 H 1.48497 * 109.47080 * 150.00265 * 3 2 1 7 7 C 1.37875 * 119.99432 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99780 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00323 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47303 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47303 * 180.02562 * 10 9 7 12 12 O 1.21289 * 119.99756 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00453 * 179.97438 * 11 10 9 14 14 C 1.46933 * 120.62590 * 0.02562 * 13 11 10 15 15 C 1.53191 * 108.77242 * 233.58829 * 14 13 11 16 16 C 1.53037 * 109.34012 * 305.37928 * 15 14 13 17 17 C 1.53039 * 109.53595 * 61.32207 * 16 15 14 18 18 H 1.08996 * 109.50123 * 58.64878 * 17 16 15 19 19 O 1.42907 * 109.49536 * 178.71652 * 17 16 15 20 20 C 1.35896 * 116.99859 * 204.94906 * 19 17 16 21 21 C 1.38729 * 120.05587 * 174.30894 * 20 19 17 22 22 C 1.38149 * 119.94383 * 179.74023 * 21 20 19 23 23 C 1.38264 * 120.05269 * 0.50583 * 22 21 20 24 24 C 1.38258 * 120.11657 * 359.76971 * 23 22 21 25 25 C 1.38147 * 120.05126 * 359.97240 * 24 23 22 26 26 C 1.46926 * 120.63374 * 179.97438 * 13 11 10 27 27 H 0.97006 * 119.99417 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47612 * 60.00272 * 9 7 2 29 29 H 1.09004 * 109.47039 * 299.99964 * 9 7 2 30 30 H 1.08994 * 109.47033 * 59.99920 * 10 9 7 31 31 H 1.09004 * 109.46876 * 299.99859 * 10 9 7 32 32 H 1.09001 * 109.58589 * 353.37703 * 14 13 11 33 33 H 1.09002 * 109.58206 * 113.65632 * 14 13 11 34 34 H 1.08998 * 109.50105 * 65.32042 * 15 14 13 35 35 H 1.08998 * 109.49386 * 185.41638 * 15 14 13 36 36 H 1.09000 * 109.43262 * 301.31768 * 16 15 14 37 37 H 1.09004 * 109.48313 * 181.35736 * 16 15 14 38 38 H 1.07998 * 120.02946 * 359.97438 * 21 20 19 39 39 H 1.08000 * 119.97148 * 180.22426 * 22 21 20 40 40 H 1.08004 * 119.94074 * 179.74280 * 23 22 21 41 41 H 1.08000 * 119.97857 * 180.02562 * 24 23 22 42 42 H 1.08005 * 120.02416 * 179.97438 * 25 24 23 43 43 H 1.09001 * 109.58569 * 6.62675 * 26 13 11 44 44 H 1.09000 * 109.58773 * 246.19648 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6527 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6622 0.0018 11 6 1.4915 -4.9672 0.0012 12 8 0.2786 -4.9671 0.0003 13 7 2.1653 -6.1345 0.0016 14 6 3.6345 -6.1507 0.0032 15 6 4.1192 -7.0167 -1.1637 16 6 3.4753 -8.4017 -1.0687 17 6 1.9540 -8.2666 -1.1661 18 1 1.6910 -7.7868 -2.1087 19 8 1.3553 -9.5629 -1.1073 20 6 0.1313 -9.7037 -1.6806 21 6 -0.4563 -10.9576 -1.7651 22 6 -1.7030 -11.0973 -2.3436 23 6 -2.3606 -9.9903 -2.8474 24 6 -1.7747 -8.7404 -2.7696 25 6 -0.5304 -8.5946 -2.1873 26 6 1.4446 -7.4148 0.0016 27 1 -0.4849 0.8401 -0.0004 28 1 0.6246 -2.5571 -0.8897 29 1 0.6239 -2.5566 0.8903 30 1 2.8710 -3.6041 0.8922 31 1 2.8724 -3.6048 -0.8878 32 1 4.0113 -5.1347 -0.1145 33 1 3.9942 -6.5671 0.9442 34 1 3.8364 -6.5484 -2.1064 35 1 5.2037 -7.1158 -1.1172 36 1 3.7389 -8.8596 -0.1153 37 1 3.8373 -9.0277 -1.8844 38 1 0.0588 -11.8232 -1.3756 39 1 -2.1625 -12.0727 -2.4063 40 1 -3.3334 -10.1022 -3.3030 41 1 -2.2904 -7.8771 -3.1635 42 1 -0.0730 -7.6181 -2.1271 43 1 0.3765 -7.2329 -0.1173 44 1 1.6262 -7.9364 0.9413 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360210628.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:50:00 Heat of formation + Delta-G solvation = -58.592124 kcal Electronic energy + Delta-G solvation = -24544.134803 eV Core-core repulsion = 21040.211957 eV Total energy + Delta-G solvation = -3503.922846 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.74007 -39.52276 -37.87317 -36.48030 -33.54739 -32.66727 -31.59149 -31.04271 -30.43432 -29.48971 -26.31703 -24.95360 -23.83614 -22.86293 -22.04263 -21.61367 -20.40288 -18.77531 -18.19847 -17.19047 -16.31359 -16.09140 -15.93752 -15.78533 -15.22799 -14.83540 -14.71676 -14.44297 -14.16977 -13.98745 -13.60113 -13.34168 -13.26226 -13.04661 -12.74573 -12.22633 -12.13713 -12.09513 -11.76260 -11.48516 -11.31380 -11.20311 -11.03013 -10.94373 -10.83863 -10.69368 -10.59272 -9.99462 -9.64578 -9.22557 -9.12841 -9.04805 -8.59171 -8.34379 -8.27637 -5.98004 -4.02630 1.20836 1.30931 2.77568 3.13433 3.31747 3.33296 3.38361 3.40749 3.66486 4.41927 4.45877 4.54435 4.68297 4.71530 4.76521 4.81827 4.91060 5.04794 5.19057 5.24089 5.25121 5.28609 5.37006 5.43303 5.55452 5.59406 5.62836 5.65920 5.73564 5.85966 5.91528 6.00406 6.15228 6.16688 6.19546 6.29796 6.41819 6.53983 6.68143 6.84989 7.27889 7.65122 7.71936 7.83071 8.04618 8.35489 8.65976 9.05584 9.61034 11.12928 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.018819 B = 0.003133 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.528849 B = 8933.689791 C =10115.003176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.527 4.527 8 H 0.056 0.944 9 C 0.037 3.963 10 C -0.127 4.127 11 C 0.513 3.487 12 O -0.531 6.531 13 N -0.622 5.622 14 C 0.104 3.896 15 C -0.132 4.132 16 C -0.112 4.112 17 C 0.072 3.928 18 H 0.078 0.922 19 O -0.308 6.308 20 C 0.129 3.871 21 C -0.155 4.155 22 C -0.085 4.085 23 C -0.160 4.160 24 C -0.076 4.076 25 C -0.204 4.204 26 C 0.088 3.912 27 H 0.261 0.739 28 H 0.023 0.977 29 H 0.023 0.977 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.128 0.872 39 H 0.127 0.873 40 H 0.122 0.878 41 H 0.126 0.874 42 H 0.132 0.868 43 H 0.097 0.903 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.185 -22.559 -4.325 23.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.566 4.566 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.167 4.167 11 C 0.303 3.697 12 O -0.405 6.405 13 N -0.360 5.360 14 C -0.019 4.019 15 C -0.171 4.171 16 C -0.150 4.150 17 C 0.015 3.985 18 H 0.096 0.904 19 O -0.221 6.221 20 C 0.083 3.917 21 C -0.174 4.174 22 C -0.103 4.103 23 C -0.179 4.179 24 C -0.095 4.095 25 C -0.223 4.223 26 C -0.035 4.035 27 H 0.071 0.929 28 H 0.041 0.959 29 H 0.042 0.958 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.115 0.885 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.104 0.896 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.146 0.854 39 H 0.145 0.855 40 H 0.140 0.860 41 H 0.144 0.856 42 H 0.150 0.850 43 H 0.115 0.885 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.474 -22.559 -4.216 23.381 hybrid contribution 0.419 1.081 -0.054 1.161 sum 4.893 -21.478 -4.270 22.438 Atomic orbital electron populations 1.70002 1.06062 1.26602 1.50103 1.25026 0.94829 0.99240 0.95285 0.86589 0.79775 0.83510 0.78067 1.20671 1.21208 1.19879 1.21201 0.92898 0.90969 1.51494 0.92607 1.18911 0.93165 0.89360 0.98623 1.21893 1.00749 0.91704 1.02364 1.21679 0.88476 0.85386 0.74129 1.90671 1.14381 1.87054 1.48426 1.48255 1.06559 1.05277 1.75906 1.21785 0.79846 1.02069 0.98195 1.21928 1.00804 0.94579 0.99744 1.21561 0.91724 0.98040 1.03657 1.22847 0.93905 0.82075 0.99663 0.90392 1.86078 1.29774 1.32589 1.73663 1.19048 0.85142 0.94122 0.93351 1.20413 0.96752 0.95140 1.05109 1.20943 0.93796 0.98859 0.96700 1.21080 1.00805 0.92767 1.03222 1.21036 0.94206 0.97647 0.96568 1.21456 0.97693 0.98546 1.04570 1.21971 0.99173 0.84517 0.97885 0.92931 0.95859 0.95816 0.90131 0.90173 0.88463 0.91337 0.90947 0.89618 0.90563 0.90744 0.85391 0.85537 0.85977 0.85595 0.85018 0.88488 0.90992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.32 13.29 55.43 0.74 -26.58 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 7 C -0.53 -14.81 9.11 -34.44 -0.31 -15.12 16 8 H 0.06 1.47 7.74 -52.48 -0.41 1.06 16 9 C 0.04 0.99 4.26 -27.88 -0.12 0.87 16 10 C -0.13 -2.55 3.99 -27.88 -0.11 -2.66 16 11 C 0.51 9.91 7.70 -10.99 -0.08 9.83 16 12 O -0.53 -12.49 15.40 5.55 0.09 -12.41 16 13 N -0.62 -9.06 2.97 -172.73 -0.51 -9.58 16 14 C 0.10 1.10 6.34 -3.71 -0.02 1.08 16 15 C -0.13 -1.13 6.08 -26.61 -0.16 -1.29 16 16 C -0.11 -1.01 5.54 -26.69 -0.15 -1.16 16 17 C 0.07 0.84 2.26 -26.58 -0.06 0.78 16 18 H 0.08 0.96 6.31 -51.93 -0.33 0.63 16 19 O -0.31 -3.79 9.80 -19.41 -0.19 -3.98 16 20 C 0.13 1.61 6.60 -39.22 -0.26 1.35 16 21 C -0.16 -1.68 9.99 -39.43 -0.39 -2.08 16 22 C -0.08 -0.82 10.04 -39.60 -0.40 -1.21 16 23 C -0.16 -1.63 10.04 -39.56 -0.40 -2.03 16 24 C -0.08 -0.90 10.04 -39.61 -0.40 -1.30 16 25 C -0.20 -2.65 8.31 -39.43 -0.33 -2.98 16 26 C 0.09 1.20 5.74 -3.68 -0.02 1.18 16 27 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 28 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 29 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 30 H 0.08 1.47 7.94 -51.93 -0.41 1.06 16 31 H 0.08 1.45 7.69 -51.93 -0.40 1.05 16 32 H 0.10 1.02 5.93 -51.93 -0.31 0.71 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 39 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 40 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 41 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 42 H 0.13 1.83 5.37 -52.48 -0.28 1.55 16 43 H 0.10 1.56 5.75 -51.93 -0.30 1.26 16 44 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 356.13 15.07 5.37 5.37 Total: -1.00 -33.90 356.13 -9.49 -43.39 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -6.64 Total: 0.46 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: -3.31 Total: -13.17 kcal Atomic # 7 Polarization: -36.38 SS G_CDS: 0.22 Total: -36.16 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: -0.10 Total: -16.39 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.90 -9.49 -43.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360210628.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.205 kcal (2) G-P(sol) polarization free energy of solvation -33.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds