Wall clock time and date at job start Tue Mar 31 2020 08:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48498 * 109.46692 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47025 * 300.00081 * 3 2 1 6 6 H 1.48500 * 109.46740 * 60.00439 * 3 2 1 7 7 C 1.37876 * 119.99769 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99840 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00339 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47300 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.46925 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00072 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99762 * 179.97438 * 11 10 9 14 14 C 1.46496 * 120.00258 * 179.97438 * 13 11 10 15 15 C 1.52993 * 109.47551 * 180.02562 * 14 13 11 16 16 H 1.09007 * 110.43813 * 307.55074 * 15 14 13 17 17 C 1.54809 * 110.48594 * 70.23478 * 15 14 13 18 18 C 1.54995 * 102.09432 * 97.79727 * 17 15 14 19 19 O 1.44382 * 103.49022 * 37.02515 * 18 17 15 20 20 C 1.43746 * 106.97289 * 319.93972 * 19 18 17 21 21 H 1.08997 * 110.00556 * 267.01941 * 20 19 18 22 22 C 1.50696 * 109.87929 * 145.93614 * 20 19 18 23 23 C 1.38233 * 120.00006 * 326.89816 * 22 20 19 24 24 C 1.38234 * 119.99828 * 179.78541 * 23 22 20 25 25 C 1.38236 * 120.00523 * 0.46004 * 24 23 22 26 26 C 1.38238 * 119.99569 * 359.77411 * 25 24 23 27 27 C 1.38240 * 119.99856 * 147.16737 * 22 20 19 28 28 H 0.97000 * 120.00540 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.47043 * 59.99933 * 9 7 2 30 30 H 1.09004 * 109.47476 * 300.00008 * 9 7 2 31 31 H 1.09000 * 109.46497 * 60.00269 * 10 9 7 32 32 H 1.09000 * 109.47312 * 300.00049 * 10 9 7 33 33 H 0.96999 * 120.00047 * 0.02562 * 13 11 10 34 34 H 1.09000 * 109.47024 * 300.00478 * 14 13 11 35 35 H 1.09004 * 109.46875 * 60.00324 * 14 13 11 36 36 H 1.09002 * 110.91221 * 215.99362 * 17 15 14 37 37 H 1.09001 * 110.90768 * 339.59861 * 17 15 14 38 38 H 1.08997 * 110.61902 * 278.52233 * 18 17 15 39 39 H 1.09000 * 110.62295 * 155.52628 * 18 17 15 40 40 H 1.08001 * 120.00130 * 359.97438 * 23 22 20 41 41 H 1.08002 * 120.00019 * 180.25681 * 24 23 22 42 42 H 1.07994 * 120.00933 * 179.78762 * 25 24 23 43 43 H 1.08001 * 120.00114 * 179.97438 * 26 25 24 44 44 H 1.07991 * 120.00162 * 359.97438 * 27 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0027 11 6 1.4917 -4.9672 -0.0045 12 8 0.2789 -4.9672 -0.0054 13 7 2.1655 -6.1344 -0.0062 14 6 1.4331 -7.4031 -0.0074 15 6 2.4273 -8.5660 -0.0086 16 1 3.1478 -8.4501 -0.8183 17 6 3.1521 -8.6605 1.3561 18 6 2.3368 -9.7612 2.0814 19 8 2.0131 -10.6914 1.0256 20 6 1.6848 -9.9104 -0.1356 21 1 0.6094 -9.7374 -0.1769 22 6 2.1360 -10.6292 -1.3809 23 6 3.2751 -11.4118 -1.3528 24 6 3.6865 -12.0747 -2.4939 25 6 2.9642 -11.9475 -3.6657 26 6 1.8278 -11.1609 -3.6950 27 6 1.4139 -10.5014 -2.5527 28 1 -0.4851 0.8400 0.0004 29 1 0.6247 -2.5563 -0.8920 30 1 0.6240 -2.5576 0.8880 31 1 2.8718 -3.6051 0.8873 32 1 2.8719 -3.6036 -0.8927 33 1 3.1355 -6.1344 -0.0059 34 1 0.8068 -7.4619 0.8827 35 1 0.8061 -7.4598 -0.8973 36 1 4.1897 -8.9678 1.2250 37 1 3.0931 -7.7144 1.8942 38 1 1.4290 -9.3428 2.5161 39 1 2.9424 -10.2456 2.8474 40 1 3.8419 -11.5078 -0.4385 41 1 4.5741 -12.6895 -2.4709 42 1 3.2875 -12.4626 -4.5581 43 1 1.2636 -11.0611 -4.6106 44 1 0.5262 -9.8869 -2.5757 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360276152.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:05:30 Heat of formation + Delta-G solvation = -75.160797 kcal Electronic energy + Delta-G solvation = -23843.207884 eV Core-core repulsion = 20338.566566 eV Total energy + Delta-G solvation = -3504.641318 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.65362 -39.14484 -38.58272 -35.12480 -33.45390 -32.58118 -31.95116 -31.12382 -30.89107 -28.78483 -26.42020 -24.87980 -23.60492 -22.64105 -21.94854 -21.18220 -20.71237 -19.57987 -17.61342 -17.01890 -16.29883 -16.21959 -15.92050 -15.42308 -15.37865 -15.30704 -14.83634 -14.42705 -14.34502 -13.87530 -13.60056 -13.36009 -13.28120 -13.05222 -12.82802 -12.23276 -12.20586 -12.01066 -11.80262 -11.41414 -11.27924 -11.16528 -11.15757 -10.95113 -10.93688 -10.58410 -10.08542 -9.97116 -9.67770 -9.20247 -9.16564 -9.05321 -8.93699 -8.82152 -8.32991 -5.96876 -4.01265 1.04347 1.16186 3.23830 3.31926 3.34785 3.38828 3.41740 3.46583 3.71636 4.12520 4.38843 4.46050 4.49921 4.65457 4.66875 4.76817 4.88171 4.90106 4.97536 5.07590 5.25609 5.30444 5.38146 5.39556 5.45066 5.51181 5.55455 5.65326 5.67361 5.78690 5.81589 5.94399 6.19836 6.21639 6.23126 6.26406 6.28733 6.59583 6.67016 6.73447 6.88352 7.73909 7.85272 7.85484 8.06464 8.37965 8.75981 9.07604 9.62378 11.14129 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.022472 B = 0.002456 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.719725 B =11397.010906 C =11935.530792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.036 3.964 10 C -0.130 4.130 11 C 0.509 3.491 12 O -0.534 6.534 13 N -0.744 5.744 14 C 0.128 3.872 15 C -0.125 4.125 16 H 0.094 0.906 17 C -0.153 4.153 18 C 0.045 3.955 19 O -0.367 6.367 20 C 0.126 3.874 21 H 0.083 0.917 22 C -0.086 4.086 23 C -0.095 4.095 24 C -0.124 4.124 25 C -0.120 4.120 26 C -0.120 4.120 27 C -0.109 4.109 28 H 0.260 0.740 29 H 0.023 0.977 30 H 0.023 0.977 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.397 0.603 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.065 0.935 39 H 0.095 0.905 40 H 0.125 0.875 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.123 0.877 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.731 -26.099 -1.965 27.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.565 4.565 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.170 4.170 11 C 0.298 3.702 12 O -0.409 6.409 13 N -0.398 5.398 14 C 0.004 3.996 15 C -0.144 4.144 16 H 0.112 0.888 17 C -0.191 4.191 18 C -0.031 4.031 19 O -0.286 6.286 20 C 0.067 3.933 21 H 0.100 0.900 22 C -0.087 4.087 23 C -0.113 4.113 24 C -0.142 4.142 25 C -0.138 4.138 26 C -0.138 4.138 27 C -0.127 4.127 28 H 0.070 0.930 29 H 0.042 0.958 30 H 0.042 0.958 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.231 0.769 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.099 0.901 37 H 0.107 0.893 38 H 0.083 0.917 39 H 0.113 0.887 40 H 0.143 0.857 41 H 0.139 0.861 42 H 0.138 0.862 43 H 0.141 0.859 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 7.662 -26.197 -1.952 27.364 hybrid contribution 0.914 1.109 -0.062 1.438 sum 8.576 -25.089 -2.013 26.590 Atomic orbital electron populations 1.70007 1.06057 1.26481 1.50292 1.25033 0.94831 0.99257 0.95325 0.86535 0.79995 0.83836 0.77593 1.19756 1.21014 1.21010 1.21258 0.92955 0.91008 1.51245 0.92564 1.18904 0.93185 0.89402 0.98618 1.21866 1.00712 0.91928 1.02465 1.21579 0.88660 0.85617 0.74372 1.90673 1.14487 1.87639 1.48119 1.46190 1.10011 1.05418 1.78209 1.21248 0.93779 0.82204 1.02370 1.22818 0.98208 0.94117 0.99258 0.88761 1.23253 1.00030 1.00576 0.95194 1.23599 0.98648 0.90051 0.90839 1.88908 1.89216 1.30322 1.20136 1.21507 0.98794 0.88600 0.84358 0.89957 1.19760 0.96021 0.98798 0.94087 1.20976 0.95951 0.96078 0.98289 1.21170 1.00040 0.99978 0.93041 1.21189 0.95570 0.99002 0.98085 1.21127 0.97053 0.97414 0.98214 1.21006 0.99769 0.99516 0.92412 0.92998 0.95835 0.95829 0.90262 0.90257 0.76919 0.91560 0.91500 0.90148 0.89303 0.91705 0.88705 0.85678 0.86093 0.86152 0.85873 0.85780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.46 13.29 55.43 0.74 -26.73 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.53 -14.92 9.11 -34.44 -0.31 -15.23 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.04 0.98 4.26 -27.88 -0.12 0.86 16 10 C -0.13 -2.60 5.64 -27.88 -0.16 -2.76 16 11 C 0.51 9.61 7.83 -10.98 -0.09 9.52 16 12 O -0.53 -12.50 15.98 5.56 0.09 -12.41 16 13 N -0.74 -9.92 5.25 -60.30 -0.32 -10.24 16 14 C 0.13 1.51 4.76 -4.05 -0.02 1.49 16 15 C -0.13 -1.12 2.69 -89.10 -0.24 -1.36 16 16 H 0.09 0.84 7.69 -51.93 -0.40 0.44 16 17 C -0.15 -1.18 6.60 -24.72 -0.16 -1.35 16 18 C 0.05 0.36 7.72 38.21 0.29 0.66 16 19 O -0.37 -3.76 10.30 -35.23 -0.36 -4.12 16 20 C 0.13 1.21 3.31 -27.31 -0.09 1.12 16 21 H 0.08 0.80 7.62 -51.93 -0.40 0.40 16 22 C -0.09 -0.85 4.80 -104.62 -0.50 -1.35 16 23 C -0.09 -0.88 9.36 -39.58 -0.37 -1.25 16 24 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 25 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 26 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 27 C -0.11 -1.02 9.69 -39.58 -0.38 -1.41 16 28 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 29 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 30 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 31 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 32 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 33 H 0.40 4.14 8.44 -40.82 -0.34 3.79 16 34 H 0.07 0.84 8.13 -51.93 -0.42 0.42 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.09 0.71 7.66 -51.93 -0.40 0.31 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.13 1.09 7.59 -52.49 -0.40 0.70 16 41 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 42 H 0.12 0.72 8.06 -52.49 -0.42 0.29 16 43 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 44 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 367.52 15.07 5.54 5.54 Total: -1.00 -34.72 367.52 -9.75 -44.46 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -6.97 Total: 0.58 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: -3.44 Total: -13.70 kcal Atomic # 7 Polarization: -37.39 SS G_CDS: 0.42 Total: -36.97 kcal Atomic # 8 Polarization: -16.26 SS G_CDS: -0.27 Total: -16.53 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.72 -9.75 -44.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360276152.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.699 kcal (2) G-P(sol) polarization free energy of solvation -34.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds