Wall clock time and date at job start Tue Mar 31 2020 07:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86794 * 120.00063 * 2 1 4 4 H 1.48507 * 109.47084 * 269.99463 * 3 2 1 5 5 H 1.48497 * 109.47486 * 29.99354 * 3 2 1 6 6 H 1.48498 * 109.47511 * 149.99737 * 3 2 1 7 7 C 1.37888 * 120.00140 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99676 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99802 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46824 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.46824 * 179.97438 * 10 9 7 12 12 O 1.21279 * 120.00474 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99641 * 179.97438 * 11 10 9 14 14 C 1.47150 * 120.98712 * 359.97438 * 13 11 10 15 15 C 1.53297 * 108.38316 * 129.44187 * 14 13 11 16 16 O 1.42968 * 109.26403 * 52.28253 * 15 14 13 17 17 C 1.42962 * 114.16813 * 297.50006 * 16 15 14 18 18 H 1.08999 * 109.47179 * 302.57307 * 17 16 15 19 19 C 1.52992 * 109.50846 * 182.44681 * 17 16 15 20 20 C 1.50703 * 109.47174 * 65.20459 * 19 17 16 21 21 C 1.38240 * 119.99924 * 269.72276 * 20 19 17 22 22 C 1.38228 * 119.99740 * 179.74375 * 21 20 19 23 23 C 1.38232 * 120.00329 * 0.52987 * 22 21 20 24 24 C 1.38238 * 119.99964 * 359.75118 * 23 22 21 25 25 C 1.38235 * 119.99949 * 359.96953 * 24 23 22 26 26 C 1.47154 * 120.97882 * 179.97438 * 13 11 10 27 27 H 0.97000 * 120.00602 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.47204 * 59.99564 * 9 7 2 29 29 H 1.08999 * 109.47126 * 299.99691 * 9 7 2 30 30 H 1.08997 * 109.47411 * 59.99905 * 10 9 7 31 31 H 1.08999 * 109.47193 * 299.99865 * 10 9 7 32 32 H 1.09000 * 109.67857 * 9.72716 * 14 13 11 33 33 H 1.08996 * 109.71222 * 249.18588 * 14 13 11 34 34 H 1.09002 * 109.51172 * 172.23104 * 15 14 13 35 35 H 1.08997 * 109.51619 * 292.33217 * 15 14 13 36 36 H 1.08999 * 109.47120 * 185.20005 * 19 17 16 37 37 H 1.08995 * 109.47201 * 305.20295 * 19 17 16 38 38 H 1.08003 * 119.99504 * 0.02562 * 21 20 19 39 39 H 1.08004 * 120.00034 * 180.29871 * 22 21 20 40 40 H 1.08005 * 120.00502 * 179.76777 * 23 22 21 41 41 H 1.08001 * 120.00001 * 180.02562 * 24 23 22 42 42 H 1.07997 * 120.00420 * 180.02562 * 25 24 23 43 43 H 1.08997 * 109.68750 * 350.28220 * 26 13 11 44 44 H 1.09001 * 109.68455 * 110.83518 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4918 -4.9672 0.0012 12 8 0.2790 -4.9673 0.0011 13 7 2.1657 -6.1343 0.0008 14 6 3.6370 -6.1596 -0.0009 15 6 4.1057 -7.0916 1.1223 16 8 3.4490 -8.3549 0.9920 17 6 2.0270 -8.2918 1.1253 18 1 1.7717 -7.8558 2.0911 19 6 1.4419 -9.7021 1.0293 20 6 1.9116 -10.5219 2.2034 21 6 3.0794 -11.2560 2.1107 22 6 3.5130 -12.0037 3.1894 23 6 2.7733 -12.0262 4.3570 24 6 1.6026 -11.2967 4.4477 25 6 1.1719 -10.5444 3.3709 26 6 1.4519 -7.4212 0.0019 27 1 -0.4851 0.8400 -0.0004 28 1 0.6246 -2.5571 -0.8896 29 1 0.6240 -2.5568 0.8903 30 1 2.8720 -3.6044 0.8905 31 1 2.8719 -3.6043 -0.8895 32 1 4.0215 -5.1544 0.1718 33 1 3.9972 -6.5308 -0.9603 34 1 5.1843 -7.2330 1.0518 35 1 3.8587 -6.6509 2.0881 36 1 0.3534 -9.6453 1.0383 37 1 1.7736 -10.1709 0.1029 38 1 3.6551 -11.2416 1.1971 39 1 4.4278 -12.5734 3.1188 40 1 3.1102 -12.6134 5.1986 41 1 1.0249 -11.3139 5.3600 42 1 0.2575 -9.9741 3.4418 43 1 0.3894 -7.2515 0.1763 44 1 1.5919 -7.9196 -0.9573 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360781405.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:41 Heat of formation + Delta-G solvation = -66.232259 kcal Electronic energy + Delta-G solvation = -24190.854571 eV Core-core repulsion = 20686.600424 eV Total energy + Delta-G solvation = -3504.254147 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.30325 -39.33797 -38.10672 -34.64215 -34.03871 -33.49175 -31.36739 -31.05325 -30.59781 -28.32215 -26.80519 -25.07875 -23.58683 -22.74567 -22.26909 -21.14646 -20.82673 -18.64255 -17.17312 -17.02425 -16.68719 -16.00119 -15.81041 -15.45898 -15.24201 -15.09812 -14.79060 -14.72476 -14.42219 -13.61462 -13.57849 -13.38422 -13.32841 -12.79781 -12.52320 -12.30758 -12.16666 -12.06033 -11.89431 -11.44785 -11.23413 -11.13104 -11.12276 -10.95026 -10.73364 -10.60634 -10.14806 -9.99600 -9.65226 -9.22565 -9.08532 -9.05028 -8.87715 -8.40152 -8.32412 -5.98072 -4.02709 1.16752 1.24330 3.09015 3.14664 3.31866 3.38109 3.40536 3.49653 3.67441 4.40316 4.45106 4.66557 4.76252 4.79809 4.85070 4.89392 4.93808 5.00227 5.13715 5.16542 5.27574 5.32430 5.35259 5.36891 5.46841 5.50527 5.61787 5.69640 5.77639 5.83119 5.89477 5.92772 6.14622 6.16645 6.28785 6.33810 6.46086 6.58203 6.83073 6.84728 7.01229 7.64985 7.71798 7.82900 8.04437 8.35433 8.66284 9.05444 9.60902 11.12894 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.028516 B = 0.002529 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.670939 B =11067.386818 C =11189.545814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.528 4.528 8 H 0.056 0.944 9 C 0.037 3.963 10 C -0.128 4.128 11 C 0.514 3.486 12 O -0.531 6.531 13 N -0.629 5.629 14 C 0.074 3.926 15 C 0.049 3.951 16 O -0.374 6.374 17 C 0.085 3.915 18 H 0.064 0.936 19 C -0.073 4.073 20 C -0.076 4.076 21 C -0.099 4.099 22 C -0.123 4.123 23 C -0.127 4.127 24 C -0.122 4.122 25 C -0.119 4.119 26 C 0.083 3.917 27 H 0.261 0.739 28 H 0.023 0.977 29 H 0.023 0.977 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.101 0.899 33 H 0.073 0.927 34 H 0.104 0.896 35 H 0.055 0.945 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.123 0.877 39 H 0.119 0.881 40 H 0.118 0.882 41 H 0.119 0.881 42 H 0.121 0.879 43 H 0.099 0.901 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.404 -24.726 4.933 26.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.566 4.566 8 H 0.074 0.926 9 C 0.000 4.000 10 C -0.168 4.168 11 C 0.305 3.695 12 O -0.406 6.406 13 N -0.366 5.366 14 C -0.049 4.049 15 C -0.029 4.029 16 O -0.292 6.292 17 C 0.027 3.973 18 H 0.082 0.918 19 C -0.111 4.111 20 C -0.076 4.076 21 C -0.117 4.117 22 C -0.141 4.141 23 C -0.145 4.145 24 C -0.140 4.140 25 C -0.137 4.137 26 C -0.040 4.040 27 H 0.071 0.929 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.119 0.881 33 H 0.092 0.908 34 H 0.122 0.878 35 H 0.074 0.926 36 H 0.109 0.891 37 H 0.102 0.898 38 H 0.141 0.859 39 H 0.137 0.863 40 H 0.136 0.864 41 H 0.138 0.862 42 H 0.139 0.861 43 H 0.118 0.882 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.661 -24.737 4.895 26.355 hybrid contribution 0.471 1.188 0.077 1.281 sum 8.131 -23.549 4.972 25.405 Atomic orbital electron populations 1.69991 1.06072 1.26629 1.50096 1.25028 0.94830 0.99253 0.95272 0.86585 0.79762 0.83479 0.78085 1.20649 1.21202 1.19884 1.21206 0.92899 0.90968 1.51514 0.92610 1.18909 0.93157 0.89354 0.98625 1.21887 1.00775 0.91811 1.02288 1.21639 0.88436 0.85327 0.74118 1.90659 1.14354 1.87032 1.48591 1.48350 1.06395 1.05763 1.76079 1.22391 0.80662 1.02128 0.99729 1.22967 0.97695 0.84506 0.97703 1.87928 1.18525 1.29393 1.93389 1.22444 0.81743 0.95059 0.98071 0.91818 1.20613 1.00668 0.92687 0.97115 1.19747 0.95369 0.97308 0.95177 1.21048 0.95641 0.96088 0.98901 1.21143 0.99769 0.99630 0.93558 1.21132 0.95533 0.99875 0.97919 1.21116 0.96843 0.97490 0.98548 1.21103 1.00038 0.99429 0.93091 1.22190 0.98924 0.84231 0.98693 0.92915 0.95822 0.95833 0.90277 0.90181 0.88115 0.90846 0.87755 0.92640 0.89104 0.89764 0.85913 0.86294 0.86409 0.86248 0.86112 0.88249 0.91190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.41 13.29 55.43 0.74 -26.68 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.53 -14.92 9.11 -34.44 -0.31 -15.23 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 10 C -0.13 -2.60 4.01 -27.88 -0.11 -2.71 16 11 C 0.51 10.11 7.71 -10.99 -0.08 10.02 16 12 O -0.53 -12.60 15.45 5.56 0.09 -12.52 16 13 N -0.63 -9.45 3.02 -172.26 -0.52 -9.97 16 14 C 0.07 0.85 6.54 -3.53 -0.02 0.83 16 15 C 0.05 0.50 6.98 37.31 0.26 0.76 16 16 O -0.37 -4.24 9.91 -35.23 -0.35 -4.58 16 17 C 0.09 0.96 2.76 -26.57 -0.07 0.88 16 18 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 19 C -0.07 -0.67 5.06 -27.89 -0.14 -0.81 16 20 C -0.08 -0.75 4.97 -104.62 -0.52 -1.27 16 21 C -0.10 -0.94 9.42 -39.58 -0.37 -1.31 16 22 C -0.12 -1.07 10.05 -39.59 -0.40 -1.47 16 23 C -0.13 -1.08 10.05 -39.58 -0.40 -1.48 16 24 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 25 C -0.12 -1.13 9.70 -39.58 -0.38 -1.52 16 26 C 0.08 1.08 5.93 -3.52 -0.02 1.06 16 27 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 28 H 0.02 0.70 8.10 -51.93 -0.42 0.27 16 29 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 30 H 0.08 1.46 7.66 -51.93 -0.40 1.06 16 31 H 0.08 1.49 8.01 -51.93 -0.42 1.07 16 32 H 0.10 1.11 6.05 -51.93 -0.31 0.79 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.09 0.72 8.09 -51.93 -0.42 0.30 16 37 H 0.08 0.71 8.08 -51.93 -0.42 0.29 16 38 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 39 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 40 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 41 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 42 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 43 H 0.10 1.43 7.08 -51.93 -0.37 1.06 16 44 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 362.81 15.07 5.47 5.47 Total: -1.00 -34.53 362.81 -9.74 -44.27 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -6.95 Total: -1.30 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: -3.19 Total: -11.27 kcal Atomic # 7 Polarization: -36.87 SS G_CDS: 0.22 Total: -36.65 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: -0.26 Total: -17.10 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.53 -9.74 -44.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360781405.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.962 kcal (2) G-P(sol) polarization free energy of solvation -34.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds