Wall clock time and date at job start Tue Mar 31 2020 07:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86794 * 120.00063 * 2 1 4 4 H 1.48507 * 109.47084 * 269.99463 * 3 2 1 5 5 H 1.48497 * 109.47486 * 29.99354 * 3 2 1 6 6 H 1.48498 * 109.47511 * 149.99737 * 3 2 1 7 7 C 1.37888 * 120.00140 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99676 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99802 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46824 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.46824 * 179.97438 * 10 9 7 12 12 O 1.21279 * 120.00474 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99641 * 179.97438 * 11 10 9 14 14 C 1.47150 * 120.98712 * 359.97438 * 13 11 10 15 15 C 1.53297 * 108.38316 * 129.44187 * 14 13 11 16 16 O 1.42968 * 109.26403 * 52.28253 * 15 14 13 17 17 C 1.42962 * 114.16813 * 297.50006 * 16 15 14 18 18 H 1.08999 * 109.47179 * 302.57307 * 17 16 15 19 19 C 1.52992 * 109.50846 * 182.44681 * 17 16 15 20 20 C 1.50703 * 109.47174 * 65.20459 * 19 17 16 21 21 C 1.38240 * 119.99924 * 269.72276 * 20 19 17 22 22 C 1.38228 * 119.99740 * 179.74375 * 21 20 19 23 23 C 1.38232 * 120.00329 * 0.52987 * 22 21 20 24 24 C 1.38238 * 119.99964 * 359.75118 * 23 22 21 25 25 C 1.38235 * 119.99949 * 359.96953 * 24 23 22 26 26 C 1.47154 * 120.97882 * 179.97438 * 13 11 10 27 27 H 0.97000 * 120.00602 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.47204 * 59.99564 * 9 7 2 29 29 H 1.08999 * 109.47126 * 299.99691 * 9 7 2 30 30 H 1.08997 * 109.47411 * 59.99905 * 10 9 7 31 31 H 1.08999 * 109.47193 * 299.99865 * 10 9 7 32 32 H 1.09000 * 109.67857 * 9.72716 * 14 13 11 33 33 H 1.08996 * 109.71222 * 249.18588 * 14 13 11 34 34 H 1.09002 * 109.51172 * 172.23104 * 15 14 13 35 35 H 1.08997 * 109.51619 * 292.33217 * 15 14 13 36 36 H 1.08999 * 109.47120 * 185.20005 * 19 17 16 37 37 H 1.08995 * 109.47201 * 305.20295 * 19 17 16 38 38 H 1.08003 * 119.99504 * 0.02562 * 21 20 19 39 39 H 1.08004 * 120.00034 * 180.29871 * 22 21 20 40 40 H 1.08005 * 120.00502 * 179.76777 * 23 22 21 41 41 H 1.08001 * 120.00001 * 180.02562 * 24 23 22 42 42 H 1.07997 * 120.00420 * 180.02562 * 25 24 23 43 43 H 1.08997 * 109.68750 * 350.28220 * 26 13 11 44 44 H 1.09001 * 109.68455 * 110.83518 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4918 -4.9672 0.0012 12 8 0.2790 -4.9673 0.0011 13 7 2.1657 -6.1343 0.0008 14 6 3.6370 -6.1596 -0.0009 15 6 4.1057 -7.0916 1.1223 16 8 3.4490 -8.3549 0.9920 17 6 2.0270 -8.2918 1.1253 18 1 1.7717 -7.8558 2.0911 19 6 1.4419 -9.7021 1.0293 20 6 1.9116 -10.5219 2.2034 21 6 3.0794 -11.2560 2.1107 22 6 3.5130 -12.0037 3.1894 23 6 2.7733 -12.0262 4.3570 24 6 1.6026 -11.2967 4.4477 25 6 1.1719 -10.5444 3.3709 26 6 1.4519 -7.4212 0.0019 27 1 -0.4851 0.8400 -0.0004 28 1 0.6246 -2.5571 -0.8896 29 1 0.6240 -2.5568 0.8903 30 1 2.8720 -3.6044 0.8905 31 1 2.8719 -3.6043 -0.8895 32 1 4.0215 -5.1544 0.1718 33 1 3.9972 -6.5308 -0.9603 34 1 5.1843 -7.2330 1.0518 35 1 3.8587 -6.6509 2.0881 36 1 0.3534 -9.6453 1.0383 37 1 1.7736 -10.1709 0.1029 38 1 3.6551 -11.2416 1.1971 39 1 4.4278 -12.5734 3.1188 40 1 3.1102 -12.6134 5.1986 41 1 1.0249 -11.3139 5.3600 42 1 0.2575 -9.9741 3.4418 43 1 0.3894 -7.2515 0.1763 44 1 1.5919 -7.9196 -0.9573 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360781405.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:41 Heat of formation + Delta-G solvation = -86.970015 kcal Electronic energy + Delta-G solvation = -24191.753828 eV Core-core repulsion = 20686.600424 eV Total energy + Delta-G solvation = -3505.153404 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.45276 -40.19901 -39.26605 -35.85778 -35.63986 -34.80867 -33.09666 -31.71160 -31.69372 -29.38197 -28.22887 -26.60990 -24.50417 -23.83160 -23.38969 -22.39191 -21.72585 -20.01617 -18.90511 -17.85829 -17.72431 -17.51040 -16.91204 -16.78997 -16.44703 -16.15531 -15.87034 -15.79194 -15.60343 -14.96110 -14.77415 -14.22931 -14.21640 -14.12346 -13.88573 -13.58871 -13.44258 -13.16451 -12.97763 -12.82762 -12.73506 -12.46738 -12.28762 -11.96928 -11.94966 -11.78784 -11.67032 -11.58083 -11.32429 -11.17392 -10.71418 -10.58128 -9.76260 -9.66974 -9.47860 -8.19157 -6.33498 0.48661 0.56829 1.41784 1.44594 1.55451 1.60074 1.87438 2.42158 2.69154 2.95287 3.13931 3.53110 3.68312 3.94792 3.95307 4.01182 4.10600 4.14219 4.22407 4.27200 4.36293 4.39382 4.42124 4.46589 4.50379 4.59276 4.69247 4.70048 4.77979 4.85810 4.90296 5.01133 5.04565 5.20950 5.23796 5.41372 5.49682 5.59236 5.63039 5.68196 5.76926 5.82828 6.12574 6.15219 6.19578 6.28420 6.84626 7.16545 7.36911 8.93644 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.028516 B = 0.002529 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.670939 B =11067.386818 C =11189.545814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.008 4.008 3 Si 0.975 3.025 4 H -0.271 1.271 5 H -0.287 1.287 6 H -0.254 1.254 7 C -0.542 4.542 8 H 0.077 0.923 9 C 0.043 3.957 10 C -0.115 4.115 11 C 0.512 3.488 12 O -0.587 6.587 13 N -0.620 5.620 14 C 0.067 3.933 15 C 0.049 3.951 16 O -0.375 6.375 17 C 0.097 3.903 18 H 0.047 0.953 19 C -0.068 4.068 20 C -0.089 4.089 21 C -0.109 4.109 22 C -0.129 4.129 23 C -0.133 4.133 24 C -0.132 4.132 25 C -0.135 4.135 26 C 0.080 3.920 27 H 0.263 0.737 28 H -0.019 1.019 29 H -0.019 1.019 30 H 0.103 0.897 31 H 0.105 0.895 32 H 0.109 0.891 33 H 0.094 0.906 34 H 0.138 0.862 35 H 0.047 0.953 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.129 0.871 39 H 0.138 0.862 40 H 0.138 0.862 41 H 0.134 0.866 42 H 0.124 0.876 43 H 0.079 0.921 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.666 -25.587 5.086 28.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.798 3.202 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.178 1.178 7 C -0.580 4.580 8 H 0.096 0.904 9 C 0.005 3.995 10 C -0.154 4.154 11 C 0.302 3.698 12 O -0.467 6.467 13 N -0.354 5.354 14 C -0.055 4.055 15 C -0.028 4.028 16 O -0.294 6.294 17 C 0.038 3.962 18 H 0.065 0.935 19 C -0.105 4.105 20 C -0.089 4.089 21 C -0.127 4.127 22 C -0.147 4.147 23 C -0.150 4.150 24 C -0.150 4.150 25 C -0.153 4.153 26 C -0.043 4.043 27 H 0.072 0.928 28 H 0.000 1.000 29 H -0.001 1.001 30 H 0.122 0.878 31 H 0.123 0.877 32 H 0.127 0.873 33 H 0.113 0.887 34 H 0.155 0.845 35 H 0.066 0.934 36 H 0.116 0.884 37 H 0.113 0.887 38 H 0.147 0.853 39 H 0.156 0.844 40 H 0.156 0.844 41 H 0.152 0.848 42 H 0.142 0.858 43 H 0.098 0.902 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 10.990 -25.652 5.049 28.360 hybrid contribution -0.530 1.360 0.049 1.460 sum 10.461 -24.292 5.098 26.935 Atomic orbital electron populations 1.70176 1.08366 1.27847 1.51422 1.26157 0.95727 1.04019 0.94610 0.85308 0.78689 0.77622 0.78550 1.19673 1.21245 1.17776 1.21700 0.94025 0.91459 1.50839 0.90443 1.18689 0.93666 0.92488 0.94618 1.21640 0.99343 0.89880 1.04575 1.21456 0.87684 0.86533 0.74101 1.90639 1.16559 1.87890 1.51575 1.48320 1.08210 1.05050 1.73815 1.22746 0.77908 1.03322 1.01504 1.23116 0.99341 0.83691 0.96640 1.87943 1.18197 1.30014 1.93201 1.22302 0.81949 0.95725 0.96213 0.93510 1.20591 1.01030 0.91326 0.97587 1.19846 0.95842 0.97848 0.95352 1.21220 0.95646 0.96315 0.99533 1.21442 1.00475 0.99469 0.93345 1.21448 0.95254 0.99731 0.98615 1.21390 0.97326 0.97341 0.98955 1.21295 1.00474 0.99989 0.93545 1.22352 0.97922 0.83519 1.00464 0.92841 1.00046 1.00057 0.87840 0.87714 0.87284 0.88739 0.84456 0.93427 0.88422 0.88677 0.85288 0.84371 0.84385 0.84817 0.85840 0.90233 0.89368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.75 13.29 21.45 0.28 -59.47 16 2 C -0.01 -0.45 5.46 84.66 0.46 0.01 16 3 Si 0.97 44.14 29.54 68.60 2.03 46.16 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 5 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 6 H -0.25 -10.62 7.11 99.48 0.71 -9.91 16 7 C -0.54 -30.81 9.11 25.60 0.23 -30.57 16 8 H 0.08 3.97 7.74 -2.91 -0.02 3.95 16 9 C 0.04 2.41 4.26 29.85 0.13 2.54 16 10 C -0.11 -4.65 4.01 29.85 0.12 -4.53 16 11 C 0.51 20.48 7.71 87.66 0.68 21.15 16 12 O -0.59 -29.43 15.45 -3.03 -0.05 -29.48 16 13 N -0.62 -18.10 3.02 -817.30 -2.47 -20.57 16 14 C 0.07 1.35 6.54 86.35 0.56 1.91 16 15 C 0.05 0.86 6.98 72.08 0.50 1.36 16 16 O -0.37 -7.63 9.91 -148.98 -1.48 -9.11 16 17 C 0.10 2.08 2.76 30.70 0.08 2.17 16 18 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 19 C -0.07 -1.18 5.06 29.85 0.15 -1.02 16 20 C -0.09 -1.66 4.97 -19.86 -0.10 -1.76 16 21 C -0.11 -1.90 9.42 22.27 0.21 -1.69 16 22 C -0.13 -2.01 10.05 22.27 0.22 -1.79 16 23 C -0.13 -2.03 10.05 22.27 0.22 -1.80 16 24 C -0.13 -2.21 10.05 22.27 0.22 -1.99 16 25 C -0.14 -2.52 9.70 22.27 0.22 -2.30 16 26 C 0.08 2.05 5.93 86.36 0.51 2.56 16 27 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 28 H -0.02 -1.20 8.10 -2.39 -0.02 -1.22 16 29 H -0.02 -1.21 8.10 -2.39 -0.02 -1.23 16 30 H 0.10 3.66 7.66 -2.39 -0.02 3.64 16 31 H 0.10 3.71 8.01 -2.39 -0.02 3.69 16 32 H 0.11 2.04 6.05 -2.39 -0.01 2.02 16 33 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.14 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.10 1.52 8.09 -2.39 -0.02 1.51 16 37 H 0.09 1.43 8.08 -2.39 -0.02 1.41 16 38 H 0.13 2.00 8.06 -2.91 -0.02 1.98 16 39 H 0.14 1.52 8.06 -2.91 -0.02 1.50 16 40 H 0.14 1.46 8.06 -2.91 -0.02 1.44 16 41 H 0.13 1.73 8.06 -2.91 -0.02 1.70 16 42 H 0.12 2.10 8.06 -2.91 -0.02 2.08 16 43 H 0.08 2.38 7.08 -2.39 -0.02 2.36 16 44 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -78.32 362.81 3.72 -74.60 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: 0.97 Total: 13.59 kcal Atomic # 6 Polarization: -20.17 SS G_CDS: 4.43 Total: -15.74 kcal Atomic # 7 Polarization: -77.85 SS G_CDS: -2.18 Total: -80.03 kcal Atomic # 8 Polarization: -37.06 SS G_CDS: -1.52 Total: -38.59 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.16 kcal Total: -78.32 3.72 -74.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360781405.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.368 kcal (2) G-P(sol) polarization free energy of solvation -78.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds