Wall clock time and date at job start Tue Mar 31 2020 08:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 119.99862 * 2 1 4 4 H 1.48501 * 109.47407 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.46810 * 120.00408 * 3 2 1 6 6 H 1.48498 * 109.47149 * 240.00228 * 3 2 1 7 7 C 1.37885 * 119.99950 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99773 * 173.45665 * 7 2 1 9 9 C 1.50696 * 119.99747 * 353.45967 * 7 2 1 10 10 H 1.09003 * 109.47442 * 334.26782 * 9 7 2 11 11 C 1.53000 * 109.46670 * 214.27629 * 9 7 2 12 12 C 1.50696 * 109.47427 * 64.99886 * 11 9 7 13 13 O 1.21277 * 119.99914 * 0.02562 * 12 11 9 14 14 N 1.34780 * 120.00221 * 179.97438 * 12 11 9 15 15 C 1.44455 * 118.51411 * 179.97438 * 14 12 11 16 16 C 1.54867 * 109.32701 * 268.93567 * 15 14 12 17 17 C 1.47692 * 109.68317 * 290.09882 * 16 15 14 18 18 O 1.42563 * 113.65978 * 60.80536 * 17 16 15 19 19 C 1.40532 * 113.54041 * 272.24158 * 18 17 16 20 20 C 1.48185 * 118.51298 * 359.73622 * 14 12 11 21 21 C 1.50695 * 109.47224 * 94.27508 * 9 7 2 22 22 C 1.38232 * 120.00114 * 58.70357 * 21 9 7 23 23 C 1.38238 * 120.00270 * 179.80839 * 22 21 9 24 24 C 1.38240 * 119.99742 * 0.39333 * 23 22 21 25 25 C 1.38231 * 119.99940 * 359.85908 * 24 23 22 26 26 C 1.38236 * 120.00131 * 238.96929 * 21 9 7 27 27 H 0.97000 * 120.00357 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47100 * 185.00242 * 11 9 7 29 29 H 1.09008 * 109.47359 * 304.99733 * 11 9 7 30 30 H 1.08996 * 109.49780 * 28.89354 * 15 14 12 31 31 H 1.09003 * 109.49689 * 148.97929 * 15 14 12 32 32 H 1.08996 * 109.43915 * 50.17017 * 16 15 14 33 33 H 1.09011 * 109.43530 * 170.03598 * 16 15 14 34 34 H 1.09003 * 108.64243 * 181.88094 * 17 16 15 35 35 H 1.08994 * 108.64699 * 299.72083 * 17 16 15 36 36 H 1.08993 * 109.40102 * 215.41528 * 19 18 17 37 37 H 1.09006 * 109.40378 * 335.24982 * 19 18 17 38 38 H 1.08995 * 109.22871 * 259.08793 * 20 14 12 39 39 H 1.09004 * 109.23079 * 18.45469 * 20 14 12 40 40 H 1.08001 * 120.00056 * 359.97438 * 22 21 9 41 41 H 1.08000 * 120.00083 * 180.22849 * 23 22 21 42 42 H 1.07993 * 120.00104 * 179.83283 * 24 23 22 43 43 H 1.08004 * 120.00233 * 179.97438 * 25 24 23 44 44 H 1.08002 * 120.00130 * 359.97438 * 26 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6963 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0793 -1.1971 -0.1071 9 6 1.2584 -2.4950 0.1475 10 1 0.3233 -2.3191 0.6795 11 6 2.1149 -3.4872 0.9366 12 6 2.3094 -2.9770 2.3412 13 8 1.8115 -1.9237 2.6781 14 7 3.0358 -3.6916 3.2233 15 6 3.2021 -3.1721 4.5609 16 6 4.4838 -2.3049 4.6183 17 6 5.6752 -3.1694 4.4968 18 8 5.7310 -3.8977 3.2725 19 6 5.0621 -5.1326 3.3231 20 6 3.6233 -4.9774 2.7787 21 6 0.9613 -3.0618 -1.2168 22 6 1.9963 -3.3425 -2.0890 23 6 1.7241 -3.8662 -3.3390 24 6 0.4162 -4.1015 -3.7199 25 6 -0.6191 -3.8159 -2.8497 26 6 -0.3466 -3.2959 -1.5982 27 1 -0.4850 0.8400 0.0004 28 1 1.6144 -4.4549 0.9676 29 1 3.0853 -3.5955 0.4518 30 1 2.3380 -2.5621 4.8243 31 1 3.2912 -4.0001 5.2643 32 1 4.4723 -1.5859 3.7993 33 1 4.5184 -1.7711 5.5682 34 1 6.5667 -2.5468 4.5728 35 1 5.6772 -3.8784 5.3246 36 1 5.6017 -5.8616 2.7186 37 1 5.0192 -5.4792 4.3558 38 1 3.0071 -5.7989 3.1439 39 1 3.6466 -5.0037 1.6892 40 1 3.0179 -3.1552 -1.7928 41 1 2.5330 -4.0890 -4.0190 42 1 0.2033 -4.5081 -4.6975 43 1 -1.6410 -3.9994 -3.1474 44 1 -1.1556 -3.0730 -0.9182 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000373464119.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:33 Heat of formation + Delta-G solvation = -50.158262 kcal Electronic energy + Delta-G solvation = -25647.027048 eV Core-core repulsion = 22143.469921 eV Total energy + Delta-G solvation = -3503.557127 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.00420 -38.51146 -37.88267 -34.77826 -33.94896 -33.10833 -31.36331 -29.96164 -29.00850 -28.46459 -26.56537 -25.04906 -22.93782 -22.24265 -21.66373 -21.42505 -19.67853 -18.32050 -16.92974 -16.75431 -16.37880 -15.98225 -15.67251 -15.39417 -14.64593 -14.38397 -14.15365 -14.07256 -13.79096 -13.42151 -13.21940 -12.85728 -12.57743 -12.45200 -12.23164 -11.97059 -11.78300 -11.61239 -11.56301 -11.16176 -10.94456 -10.79273 -10.68074 -10.58393 -10.51891 -10.20431 -10.00696 -9.68845 -9.37860 -8.98804 -8.76375 -8.27938 -8.13369 -7.99819 -7.55334 -5.88085 -3.86626 2.33533 2.39474 3.41352 3.43393 3.46252 3.51160 3.60437 3.87502 4.57162 4.79712 4.80119 4.83242 5.00247 5.05764 5.26153 5.35184 5.43136 5.47119 5.57822 5.66176 5.69944 5.70297 5.76395 5.77351 5.88652 5.89105 6.14564 6.16933 6.26758 6.33358 6.37279 6.46008 6.59206 6.84600 6.95550 7.07241 7.15085 7.27645 7.35608 7.49531 7.58354 7.91201 7.95330 8.00256 8.11729 8.44603 9.11935 9.14072 9.74701 11.22082 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.012366 B = 0.005624 C = 0.004420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2263.692715 B = 4977.725492 C = 6334.010120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.079 3.921 3 Si 0.886 3.114 4 H -0.289 1.289 5 H -0.277 1.277 6 H -0.280 1.280 7 C -0.489 4.489 8 H 0.049 0.951 9 C 0.080 3.920 10 H 0.071 0.929 11 C -0.121 4.121 12 C 0.513 3.487 13 O -0.494 6.494 14 N -0.623 5.623 15 C 0.121 3.879 16 C -0.174 4.174 17 C 0.067 3.933 18 O -0.365 6.365 19 C 0.049 3.951 20 C 0.081 3.919 21 C -0.020 4.020 22 C -0.117 4.117 23 C -0.132 4.132 24 C -0.156 4.156 25 C -0.128 4.128 26 C -0.117 4.117 27 H 0.259 0.741 28 H 0.062 0.938 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.061 0.939 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.044 0.956 36 H 0.092 0.908 37 H 0.051 0.949 38 H 0.065 0.935 39 H 0.091 0.909 40 H 0.112 0.888 41 H 0.105 0.895 42 H 0.103 0.897 43 H 0.105 0.895 44 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.371 -12.501 6.095 15.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.124 4.124 3 Si 0.714 3.286 4 H -0.215 1.215 5 H -0.203 1.203 6 H -0.206 1.206 7 C -0.526 4.526 8 H 0.068 0.932 9 C 0.061 3.939 10 H 0.089 0.911 11 C -0.161 4.161 12 C 0.302 3.698 13 O -0.365 6.365 14 N -0.361 5.361 15 C -0.003 4.003 16 C -0.213 4.213 17 C -0.009 4.009 18 O -0.282 6.282 19 C -0.029 4.029 20 C -0.042 4.042 21 C -0.021 4.021 22 C -0.135 4.135 23 C -0.150 4.150 24 C -0.175 4.175 25 C -0.146 4.146 26 C -0.135 4.135 27 H 0.068 0.932 28 H 0.081 0.919 29 H 0.095 0.905 30 H 0.104 0.896 31 H 0.080 0.920 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.063 0.937 36 H 0.110 0.890 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.110 0.890 40 H 0.130 0.870 41 H 0.123 0.877 42 H 0.121 0.879 43 H 0.123 0.877 44 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 7.014 -11.699 6.133 14.956 hybrid contribution 0.401 0.938 0.114 1.026 sum 7.415 -10.761 6.247 14.485 Atomic orbital electron populations 1.69904 1.05910 1.26434 1.49693 1.24797 0.94642 0.98775 0.94229 0.86766 0.79778 0.83691 0.78345 1.21500 1.20301 1.20558 1.20641 0.92426 0.89591 1.49985 0.93239 1.17838 0.97426 0.91452 0.87156 0.91126 1.21828 1.02052 0.99708 0.92542 1.20955 0.77347 0.84192 0.87321 1.90740 1.46813 1.21010 1.77911 1.47891 1.54147 1.22282 1.11768 1.21188 0.98127 0.96956 0.84060 1.22008 0.95845 1.00009 1.03437 1.21519 0.98574 0.95057 0.85762 1.87512 1.73660 1.31638 1.35409 1.22935 0.92367 0.86878 1.00718 1.22774 0.93883 0.85875 1.01698 1.20747 0.91933 0.90323 0.99102 1.20941 0.99329 0.99600 0.93623 1.20963 0.95977 1.01340 0.96693 1.20782 0.93273 1.04364 0.99047 1.20981 0.97943 1.00902 0.94821 1.21082 0.97035 0.99281 0.96141 0.93159 0.91925 0.90466 0.89611 0.92034 0.90046 0.90227 0.90190 0.93723 0.88982 0.93029 0.91664 0.89047 0.86988 0.87714 0.87862 0.87695 0.86820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.30 12.87 55.43 0.71 -25.59 16 2 C 0.08 2.26 5.45 -17.82 -0.10 2.17 16 3 Si 0.89 22.77 29.54 -169.99 -5.02 17.75 16 4 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 5 H -0.28 -7.20 7.11 56.52 0.40 -6.79 16 6 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.49 -13.44 6.46 -34.44 -0.22 -13.66 16 8 H 0.05 1.37 7.82 -52.49 -0.41 0.96 16 9 C 0.08 1.96 1.67 -92.93 -0.16 1.80 16 10 H 0.07 1.97 6.98 -51.93 -0.36 1.61 16 11 C -0.12 -2.42 3.25 -27.89 -0.09 -2.51 16 12 C 0.51 10.64 7.37 -10.99 -0.08 10.56 16 13 O -0.49 -12.57 14.37 5.56 0.08 -12.49 16 14 N -0.62 -9.97 2.55 -171.73 -0.44 -10.41 16 15 C 0.12 1.72 5.43 -4.15 -0.02 1.69 16 16 C -0.17 -2.34 6.03 -28.31 -0.17 -2.51 16 17 C 0.07 0.78 6.04 34.59 0.21 0.99 16 18 O -0.36 -4.95 10.23 -34.11 -0.35 -5.30 16 19 C 0.05 0.51 6.50 38.01 0.25 0.76 16 20 C 0.08 0.98 6.42 -2.26 -0.01 0.96 16 21 C -0.02 -0.46 4.77 -104.63 -0.50 -0.96 16 22 C -0.12 -2.40 8.86 -39.58 -0.35 -2.75 16 23 C -0.13 -2.40 10.05 -39.58 -0.40 -2.80 16 24 C -0.16 -2.77 10.05 -39.58 -0.40 -3.17 16 25 C -0.13 -2.41 10.05 -39.58 -0.40 -2.81 16 26 C -0.12 -2.53 9.67 -39.58 -0.38 -2.91 16 27 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 28 H 0.06 1.09 8.03 -51.93 -0.42 0.68 16 29 H 0.08 1.47 6.91 -51.92 -0.36 1.11 16 30 H 0.09 1.39 7.23 -51.93 -0.38 1.02 16 31 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 32 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 33 H 0.08 0.89 8.14 -51.92 -0.42 0.46 16 34 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.04 0.41 7.28 -51.93 -0.38 0.03 16 36 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.05 0.44 7.21 -51.93 -0.37 0.06 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.09 1.13 5.88 -51.93 -0.31 0.83 16 40 H 0.11 2.23 7.69 -52.49 -0.40 1.83 16 41 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 42 H 0.10 1.53 8.06 -52.49 -0.42 1.10 16 43 H 0.10 1.69 8.06 -52.48 -0.42 1.27 16 44 H 0.11 2.49 7.95 -52.49 -0.42 2.07 16 LS Contribution 353.21 15.07 5.32 5.32 Total: -1.00 -33.42 353.21 -9.26 -42.67 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -6.74 Total: 3.19 kcal Atomic # 6 Polarization: -12.33 SS G_CDS: -2.82 Total: -15.15 kcal Atomic # 7 Polarization: -36.27 SS G_CDS: 0.28 Total: -35.99 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: -0.27 Total: -17.79 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.42 -9.26 -42.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373464119.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.487 kcal (2) G-P(sol) polarization free energy of solvation -33.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds