Wall clock time and date at job start Tue Mar 31 2020 08:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 119.99862 * 2 1 4 4 H 1.48501 * 109.47407 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.46810 * 120.00408 * 3 2 1 6 6 H 1.48498 * 109.47149 * 240.00228 * 3 2 1 7 7 C 1.37885 * 119.99950 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99773 * 173.45665 * 7 2 1 9 9 C 1.50696 * 119.99747 * 353.45967 * 7 2 1 10 10 H 1.09003 * 109.47442 * 334.26782 * 9 7 2 11 11 C 1.53000 * 109.46670 * 214.27629 * 9 7 2 12 12 C 1.50696 * 109.47427 * 64.99886 * 11 9 7 13 13 O 1.21277 * 119.99914 * 0.02562 * 12 11 9 14 14 N 1.34780 * 120.00221 * 179.97438 * 12 11 9 15 15 C 1.44455 * 118.51411 * 179.97438 * 14 12 11 16 16 C 1.54867 * 109.32701 * 268.93567 * 15 14 12 17 17 C 1.47692 * 109.68317 * 290.09882 * 16 15 14 18 18 O 1.42563 * 113.65978 * 60.80536 * 17 16 15 19 19 C 1.40532 * 113.54041 * 272.24158 * 18 17 16 20 20 C 1.48185 * 118.51298 * 359.73622 * 14 12 11 21 21 C 1.50695 * 109.47224 * 94.27508 * 9 7 2 22 22 C 1.38232 * 120.00114 * 58.70357 * 21 9 7 23 23 C 1.38238 * 120.00270 * 179.80839 * 22 21 9 24 24 C 1.38240 * 119.99742 * 0.39333 * 23 22 21 25 25 C 1.38231 * 119.99940 * 359.85908 * 24 23 22 26 26 C 1.38236 * 120.00131 * 238.96929 * 21 9 7 27 27 H 0.97000 * 120.00357 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47100 * 185.00242 * 11 9 7 29 29 H 1.09008 * 109.47359 * 304.99733 * 11 9 7 30 30 H 1.08996 * 109.49780 * 28.89354 * 15 14 12 31 31 H 1.09003 * 109.49689 * 148.97929 * 15 14 12 32 32 H 1.08996 * 109.43915 * 50.17017 * 16 15 14 33 33 H 1.09011 * 109.43530 * 170.03598 * 16 15 14 34 34 H 1.09003 * 108.64243 * 181.88094 * 17 16 15 35 35 H 1.08994 * 108.64699 * 299.72083 * 17 16 15 36 36 H 1.08993 * 109.40102 * 215.41528 * 19 18 17 37 37 H 1.09006 * 109.40378 * 335.24982 * 19 18 17 38 38 H 1.08995 * 109.22871 * 259.08793 * 20 14 12 39 39 H 1.09004 * 109.23079 * 18.45469 * 20 14 12 40 40 H 1.08001 * 120.00056 * 359.97438 * 22 21 9 41 41 H 1.08000 * 120.00083 * 180.22849 * 23 22 21 42 42 H 1.07993 * 120.00104 * 179.83283 * 24 23 22 43 43 H 1.08004 * 120.00233 * 179.97438 * 25 24 23 44 44 H 1.08002 * 120.00130 * 359.97438 * 26 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6963 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0793 -1.1971 -0.1071 9 6 1.2584 -2.4950 0.1475 10 1 0.3233 -2.3191 0.6795 11 6 2.1149 -3.4872 0.9366 12 6 2.3094 -2.9770 2.3412 13 8 1.8115 -1.9237 2.6781 14 7 3.0358 -3.6916 3.2233 15 6 3.2021 -3.1721 4.5609 16 6 4.4838 -2.3049 4.6183 17 6 5.6752 -3.1694 4.4968 18 8 5.7310 -3.8977 3.2725 19 6 5.0621 -5.1326 3.3231 20 6 3.6233 -4.9774 2.7787 21 6 0.9613 -3.0618 -1.2168 22 6 1.9963 -3.3425 -2.0890 23 6 1.7241 -3.8662 -3.3390 24 6 0.4162 -4.1015 -3.7199 25 6 -0.6191 -3.8159 -2.8497 26 6 -0.3466 -3.2959 -1.5982 27 1 -0.4850 0.8400 0.0004 28 1 1.6144 -4.4549 0.9676 29 1 3.0853 -3.5955 0.4518 30 1 2.3380 -2.5621 4.8243 31 1 3.2912 -4.0001 5.2643 32 1 4.4723 -1.5859 3.7993 33 1 4.5184 -1.7711 5.5682 34 1 6.5667 -2.5468 4.5728 35 1 5.6772 -3.8784 5.3246 36 1 5.6017 -5.8616 2.7186 37 1 5.0192 -5.4792 4.3558 38 1 3.0071 -5.7989 3.1439 39 1 3.6466 -5.0037 1.6892 40 1 3.0179 -3.1552 -1.7928 41 1 2.5330 -4.0890 -4.0190 42 1 0.2033 -4.5081 -4.6975 43 1 -1.6410 -3.9994 -3.1474 44 1 -1.1556 -3.0730 -0.9182 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000373464119.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:32 Heat of formation + Delta-G solvation = -70.675197 kcal Electronic energy + Delta-G solvation = -25647.916729 eV Core-core repulsion = 22143.469921 eV Total energy + Delta-G solvation = -3504.446808 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.29382 -39.97217 -39.25072 -36.19014 -35.69183 -34.25375 -33.30758 -31.49727 -30.49628 -29.57150 -28.06046 -26.68155 -24.56360 -23.41286 -23.08212 -22.62610 -21.30912 -19.73203 -18.54343 -18.20612 -17.84641 -17.30311 -16.84022 -16.61651 -16.49175 -15.89050 -15.72056 -15.49012 -15.22473 -14.56269 -14.48696 -14.43015 -13.99146 -13.91421 -13.69212 -13.48823 -13.42381 -13.14335 -12.91292 -12.79858 -12.56574 -12.44619 -12.30827 -11.86935 -11.80527 -11.68038 -11.57356 -11.28612 -10.96541 -10.76728 -10.51051 -10.25978 -9.53624 -9.44331 -9.18620 -8.05689 -6.07286 0.78423 0.84839 1.31582 1.36555 1.41351 1.95876 2.22615 2.44290 3.03776 3.18455 3.34693 3.78601 3.87007 3.95192 4.11845 4.25080 4.28143 4.36105 4.40171 4.41958 4.46534 4.52615 4.55260 4.60793 4.72033 4.72951 4.79369 4.81705 4.91329 4.94785 4.98778 5.04674 5.21844 5.26037 5.38169 5.52850 5.62137 5.77579 5.84193 5.89519 5.96182 6.17981 6.40796 6.43712 6.46910 6.54421 6.99343 7.54232 7.58340 9.03749 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.012366 B = 0.005624 C = 0.004420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2263.692715 B = 4977.725492 C = 6334.010120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.024 3.976 3 Si 0.933 3.067 4 H -0.286 1.286 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.483 4.483 8 H 0.040 0.960 9 C 0.084 3.916 10 H 0.022 0.978 11 C -0.111 4.111 12 C 0.505 3.495 13 O -0.558 6.558 14 N -0.614 5.614 15 C 0.115 3.885 16 C -0.168 4.168 17 C 0.065 3.935 18 O -0.394 6.394 19 C 0.048 3.952 20 C 0.070 3.930 21 C -0.045 4.045 22 C -0.129 4.129 23 C -0.125 4.125 24 C -0.147 4.147 25 C -0.127 4.127 26 C -0.141 4.141 27 H 0.254 0.746 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.055 0.945 31 H 0.106 0.894 32 H 0.028 0.972 33 H 0.102 0.898 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.117 0.883 37 H 0.080 0.920 38 H 0.096 0.904 39 H 0.085 0.915 40 H 0.112 0.888 41 H 0.141 0.859 42 H 0.145 0.855 43 H 0.132 0.868 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.307 -15.423 5.268 18.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.174 4.174 3 Si 0.760 3.240 4 H -0.211 1.211 5 H -0.212 1.212 6 H -0.192 1.192 7 C -0.521 4.521 8 H 0.058 0.942 9 C 0.065 3.935 10 H 0.041 0.959 11 C -0.151 4.151 12 C 0.294 3.706 13 O -0.434 6.434 14 N -0.350 5.350 15 C -0.009 4.009 16 C -0.206 4.206 17 C -0.011 4.011 18 O -0.313 6.313 19 C -0.029 4.029 20 C -0.052 4.052 21 C -0.046 4.046 22 C -0.147 4.147 23 C -0.143 4.143 24 C -0.165 4.165 25 C -0.145 4.145 26 C -0.160 4.160 27 H 0.063 0.937 28 H 0.106 0.894 29 H 0.107 0.893 30 H 0.074 0.926 31 H 0.124 0.876 32 H 0.047 0.953 33 H 0.120 0.880 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.135 0.865 37 H 0.098 0.902 38 H 0.114 0.886 39 H 0.103 0.897 40 H 0.130 0.870 41 H 0.159 0.841 42 H 0.163 0.837 43 H 0.150 0.850 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 9.001 -14.678 5.311 18.019 hybrid contribution -0.182 1.690 0.373 1.740 sum 8.819 -12.989 5.684 16.697 Atomic orbital electron populations 1.70037 1.06973 1.26405 1.52094 1.25453 0.95356 1.01592 0.95030 0.86010 0.78796 0.80964 0.78223 1.21130 1.21204 1.19196 1.20885 0.91976 0.91207 1.47983 0.94191 1.17606 0.95478 0.91701 0.88706 0.95947 1.21659 1.01905 0.99539 0.91958 1.21137 0.77490 0.83784 0.88168 1.90711 1.49802 1.23862 1.79070 1.47911 1.52489 1.22932 1.11632 1.21379 0.97364 0.98251 0.83860 1.21976 0.96677 0.99421 1.02574 1.21610 0.97453 0.95635 0.86443 1.87492 1.74039 1.33057 1.36676 1.23148 0.90701 0.86212 1.02867 1.23171 0.95836 0.84376 1.01786 1.20547 0.93146 0.92551 0.98349 1.21008 0.98662 1.00420 0.94622 1.21358 0.97553 0.99474 0.95878 1.21261 0.92473 1.02512 1.00208 1.21285 1.00023 0.99662 0.93559 1.21076 0.96195 1.01132 0.97583 0.93740 0.89383 0.89341 0.92642 0.87591 0.95254 0.87959 0.89504 0.90046 0.86533 0.90184 0.88594 0.89658 0.87013 0.84098 0.83746 0.85003 0.88978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.84 12.87 21.45 0.28 -57.57 16 2 C 0.02 1.47 5.45 84.66 0.46 1.93 16 3 Si 0.93 48.65 29.54 68.60 2.03 50.67 16 4 H -0.29 -14.59 7.11 99.48 0.71 -13.88 16 5 H -0.29 -15.12 7.11 99.48 0.71 -14.42 16 6 H -0.27 -13.21 7.11 99.48 0.71 -12.50 16 7 C -0.48 -27.85 6.46 25.60 0.17 -27.69 16 8 H 0.04 2.31 7.82 -2.91 -0.02 2.29 16 9 C 0.08 4.33 1.67 -12.29 -0.02 4.31 16 10 H 0.02 1.35 6.98 -2.39 -0.02 1.33 16 11 C -0.11 -4.56 3.25 29.85 0.10 -4.47 16 12 C 0.51 21.90 7.37 87.66 0.65 22.55 16 13 O -0.56 -30.60 14.37 -3.02 -0.04 -30.64 16 14 N -0.61 -19.48 2.55 -815.63 -2.08 -21.56 16 15 C 0.11 3.21 5.43 87.40 0.47 3.68 16 16 C -0.17 -4.47 6.03 29.57 0.18 -4.29 16 17 C 0.06 1.35 6.04 70.32 0.42 1.77 16 18 O -0.39 -9.81 10.23 -144.96 -1.48 -11.30 16 19 C 0.05 0.81 6.50 72.54 0.47 1.29 16 20 C 0.07 1.51 6.42 86.61 0.56 2.07 16 21 C -0.05 -2.09 4.77 -19.87 -0.09 -2.19 16 22 C -0.13 -5.19 8.86 22.27 0.20 -5.00 16 23 C -0.12 -4.14 10.05 22.27 0.22 -3.91 16 24 C -0.15 -4.63 10.05 22.27 0.22 -4.40 16 25 C -0.13 -4.56 10.05 22.27 0.22 -4.33 16 26 C -0.14 -6.25 9.67 22.27 0.22 -6.04 16 27 H 0.25 15.51 8.31 -92.71 -0.77 14.74 16 28 H 0.09 3.11 8.03 -2.39 -0.02 3.09 16 29 H 0.09 3.41 6.91 -2.38 -0.02 3.39 16 30 H 0.06 1.89 7.23 -2.39 -0.02 1.87 16 31 H 0.11 2.01 8.10 -2.39 -0.02 2.00 16 32 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.10 2.19 8.14 -2.38 -0.02 2.17 16 34 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.08 1.12 7.28 -2.39 -0.02 1.10 16 36 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.08 0.92 7.21 -2.38 -0.02 0.90 16 38 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.09 1.95 5.88 -2.38 -0.01 1.93 16 40 H 0.11 4.40 7.69 -2.91 -0.02 4.38 16 41 H 0.14 3.65 8.06 -2.91 -0.02 3.63 16 42 H 0.14 3.42 8.06 -2.91 -0.02 3.40 16 43 H 0.13 3.93 8.06 -2.91 -0.02 3.90 16 44 H 0.09 4.34 7.95 -2.91 -0.02 4.32 16 Total: -1.00 -79.96 353.21 4.12 -75.84 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: 0.98 Total: 19.26 kcal Atomic # 6 Polarization: -29.16 SS G_CDS: 4.44 Total: -24.71 kcal Atomic # 7 Polarization: -77.33 SS G_CDS: -1.80 Total: -79.13 kcal Atomic # 8 Polarization: -40.41 SS G_CDS: -1.53 Total: -41.94 kcal Atomic # 14 Polarization: 48.65 SS G_CDS: 2.03 Total: 50.67 kcal Total: -79.96 4.12 -75.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373464119.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.164 kcal (2) G-P(sol) polarization free energy of solvation -79.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds