Wall clock time and date at job start Tue Mar 31 2020 08:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86796 * 120.00383 * 2 1 4 4 H 1.48502 * 109.47121 * 239.99860 * 3 2 1 5 5 H 1.48505 * 109.47245 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47730 * 119.99778 * 3 2 1 7 7 C 1.37882 * 119.99882 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00291 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99769 * 0.02562 * 7 2 1 10 10 C 1.53038 * 109.45990 * 179.97438 * 9 7 2 11 11 C 1.53200 * 109.31353 * 178.63052 * 10 9 7 12 12 N 1.46923 * 108.77454 * 54.63255 * 11 10 9 13 13 C 1.34774 * 120.62774 * 126.37131 * 12 11 10 14 14 O 1.21279 * 120.00472 * 359.97438 * 13 12 11 15 15 C 1.50706 * 120.00020 * 179.97438 * 13 12 11 16 16 C 1.52997 * 109.47238 * 180.02562 * 15 13 12 17 17 O 1.42895 * 109.47269 * 179.97438 * 16 15 13 18 18 C 1.35901 * 117.00475 * 179.97438 * 17 16 15 19 19 C 1.38733 * 120.05082 * 359.72425 * 18 17 16 20 20 C 1.38148 * 119.93909 * 179.74153 * 19 18 17 21 21 C 1.38258 * 120.05823 * 0.50997 * 20 19 18 22 22 C 1.38274 * 120.10971 * 359.76981 * 21 20 19 23 23 C 1.38140 * 120.05508 * 359.97198 * 22 21 20 24 24 C 1.46923 * 118.74019 * 306.64173 * 12 11 10 25 25 C 1.52767 * 109.00740 * 53.31208 * 24 12 11 26 26 H 0.97006 * 119.99863 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.46087 * 299.97142 * 9 7 2 28 28 H 1.09000 * 109.50221 * 58.67378 * 10 9 7 29 29 H 1.09001 * 109.52295 * 298.59086 * 10 9 7 30 30 H 1.08995 * 109.57907 * 294.84221 * 11 10 9 31 31 H 1.08998 * 109.70015 * 174.49128 * 11 10 9 32 32 H 1.09001 * 109.46953 * 299.99667 * 15 13 12 33 33 H 1.09000 * 109.47318 * 59.99264 * 15 13 12 34 34 H 1.09001 * 109.46832 * 299.99686 * 16 15 13 35 35 H 1.09004 * 109.47261 * 59.99705 * 16 15 13 36 36 H 1.08001 * 120.03038 * 359.97438 * 19 18 17 37 37 H 1.08001 * 119.97131 * 180.27561 * 20 19 18 38 38 H 1.07999 * 119.94945 * 179.73692 * 21 20 19 39 39 H 1.08005 * 119.96865 * 179.97438 * 22 21 20 40 40 H 1.08004 * 120.02325 * 179.97438 * 23 22 21 41 41 H 1.08997 * 109.58651 * 173.14483 * 24 12 11 42 42 H 1.08992 * 109.58942 * 293.57315 * 24 12 11 43 43 H 1.08998 * 109.56180 * 185.54829 * 25 24 12 44 44 H 1.09003 * 109.35696 * 65.49583 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.1029 1.6962 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2455 -3.6622 0.0005 11 6 1.4764 -4.9867 0.0351 12 7 0.5222 -5.0087 -1.0819 13 6 0.5120 -6.0343 -1.9562 14 8 1.2957 -6.9506 -1.8253 15 6 -0.4733 -6.0427 -3.0965 16 6 -0.2753 -7.3088 -3.9323 17 8 -1.2099 -7.3170 -5.0132 18 6 -1.1669 -8.3806 -5.8581 19 6 -0.2403 -9.3928 -5.6543 20 6 -0.2021 -10.4755 -6.5114 21 6 -1.0794 -10.5459 -7.5777 22 6 -2.0001 -9.5355 -7.7863 23 6 -2.0458 -8.4533 -6.9290 24 6 -0.4166 -3.8884 -1.2312 25 6 0.3700 -2.5789 -1.2484 26 1 -0.4850 0.8401 -0.0004 27 1 0.6243 -2.5567 0.8906 28 1 2.8880 -3.5916 0.8782 29 1 2.8559 -3.6195 -0.9015 30 1 0.9369 -5.0713 0.9784 31 1 2.1733 -5.8190 -0.0632 32 1 -1.4884 -6.0248 -2.6997 33 1 -0.3124 -5.1648 -3.7222 34 1 0.7398 -7.3271 -4.3291 35 1 -0.4366 -8.1864 -3.3063 36 1 0.4482 -9.3361 -4.8241 37 1 0.5161 -11.2659 -6.3506 38 1 -1.0452 -11.3911 -8.2491 39 1 -2.6840 -9.5926 -8.6203 40 1 -2.7648 -7.6642 -7.0927 41 1 -0.9668 -3.9948 -2.1661 42 1 -1.1137 -3.8816 -0.3934 43 1 -0.3225 -1.7373 -1.2597 44 1 0.9977 -2.5462 -2.1390 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397201812.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:47:41 Heat of formation + Delta-G solvation = -60.959202 kcal Electronic energy + Delta-G solvation = -24002.719843 eV Core-core repulsion = 20498.694353 eV Total energy + Delta-G solvation = -3504.025490 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.36125 -39.70529 -37.62329 -36.87433 -33.59818 -32.48833 -31.29063 -30.96243 -30.16800 -29.55391 -26.43321 -24.79080 -23.01828 -22.63982 -22.32383 -21.64444 -19.82972 -18.70157 -18.10740 -17.00186 -16.45231 -16.32268 -16.03774 -15.73665 -15.37640 -14.92125 -14.59290 -14.52766 -13.69159 -13.54256 -13.42054 -13.28360 -13.14467 -12.77494 -12.69463 -12.41613 -11.95062 -11.92199 -11.79950 -11.54545 -11.34563 -10.96174 -10.93371 -10.87418 -10.70386 -10.43845 -10.15785 -9.75918 -9.51725 -9.23022 -9.21642 -8.99136 -8.42449 -8.38896 -8.09982 -6.07341 -4.13523 1.12815 1.24783 2.78730 2.84391 3.27267 3.32206 3.35186 3.59083 3.59328 4.37581 4.56537 4.67736 4.73398 4.86606 4.87969 4.94994 5.15364 5.19792 5.22155 5.31886 5.44042 5.55796 5.64516 5.71225 5.74489 5.79390 5.88550 6.02259 6.08908 6.12147 6.20598 6.24486 6.31645 6.38509 6.57505 6.59374 6.81738 6.97056 7.07235 7.20915 7.25517 7.61081 7.81440 7.86357 7.98667 8.35385 8.40462 8.89601 9.51810 10.98240 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.027444 B = 0.002486 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.010185 B =11259.473943 C =11814.225756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.062 3.938 3 Si 0.891 3.109 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.513 4.513 8 H 0.054 0.946 9 C 0.048 3.952 10 C -0.124 4.124 11 C 0.111 3.889 12 N -0.596 5.596 13 C 0.517 3.483 14 O -0.562 6.562 15 C -0.139 4.139 16 C 0.077 3.923 17 O -0.317 6.317 18 C 0.135 3.865 19 C -0.209 4.209 20 C -0.081 4.081 21 C -0.164 4.164 22 C -0.083 4.083 23 C -0.155 4.155 24 C 0.100 3.900 25 C -0.126 4.126 26 H 0.261 0.739 27 H 0.028 0.972 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.103 0.897 33 H 0.106 0.894 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.131 0.869 37 H 0.124 0.876 38 H 0.121 0.879 39 H 0.127 0.873 40 H 0.130 0.870 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.106 0.894 44 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.916 -16.424 -11.086 20.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.551 4.551 8 H 0.073 0.927 9 C 0.030 3.970 10 C -0.162 4.162 11 C -0.011 4.011 12 N -0.328 5.328 13 C 0.305 3.695 14 O -0.443 6.443 15 C -0.179 4.179 16 C 0.002 3.998 17 O -0.230 6.230 18 C 0.090 3.910 19 C -0.227 4.227 20 C -0.099 4.099 21 C -0.182 4.182 22 C -0.101 4.101 23 C -0.174 4.174 24 C -0.021 4.021 25 C -0.164 4.164 26 H 0.071 0.929 27 H 0.046 0.954 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.121 0.879 33 H 0.124 0.876 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.149 0.851 37 H 0.142 0.858 38 H 0.139 0.861 39 H 0.145 0.855 40 H 0.148 0.852 41 H 0.088 0.912 42 H 0.083 0.917 43 H 0.124 0.876 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -4.788 -16.571 -10.982 20.448 hybrid contribution 0.591 0.990 0.109 1.158 sum -4.196 -15.581 -10.873 19.458 Atomic orbital electron populations 1.69814 1.05851 1.26645 1.50779 1.24957 0.94888 0.99079 0.95025 0.86667 0.79634 0.83121 0.78636 1.20330 1.21287 1.20294 1.21161 0.92925 0.90549 1.50492 0.92738 1.18634 0.92646 0.91758 0.93974 1.22014 0.98934 0.94153 1.01068 1.21725 0.91746 0.99805 0.87784 1.48225 1.36107 1.20786 1.27670 1.20125 0.84324 0.82100 0.82967 1.90654 1.41960 1.36456 1.75193 1.21488 1.00971 0.99234 0.96226 1.22463 0.92210 0.98524 0.86621 1.85991 1.57201 1.41190 1.38659 1.19035 0.94675 0.86811 0.90511 1.21401 1.01870 0.96170 1.03290 1.20973 0.97944 0.97013 0.93943 1.21056 0.97854 0.99953 0.99344 1.20959 0.97919 0.93033 0.98222 1.20472 1.01145 1.00603 0.95145 1.22027 0.91709 0.87452 1.00958 1.21967 1.00169 0.94619 0.99668 0.92870 0.95414 0.92048 0.92935 0.92073 0.90283 0.87868 0.87607 0.91052 0.91131 0.85084 0.85847 0.86065 0.85481 0.85177 0.91218 0.91692 0.87580 0.94209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.03 11.30 55.43 0.63 -23.41 16 2 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 3 Si 0.89 20.61 29.54 -169.99 -5.02 15.59 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.51 -13.44 8.56 -34.44 -0.29 -13.73 16 8 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 9 C 0.05 1.12 2.07 -91.73 -0.19 0.93 16 10 C -0.12 -2.47 5.30 -26.61 -0.14 -2.61 16 11 C 0.11 1.97 6.44 -3.71 -0.02 1.95 16 12 N -0.60 -10.23 2.98 -173.03 -0.52 -10.74 16 13 C 0.52 8.46 7.70 -10.98 -0.08 8.37 16 14 O -0.56 -10.58 15.39 5.56 0.09 -10.49 16 15 C -0.14 -1.79 4.42 -27.88 -0.12 -1.91 16 16 C 0.08 0.97 4.03 37.16 0.15 1.12 16 17 O -0.32 -4.05 10.14 -19.43 -0.20 -4.25 16 18 C 0.14 1.62 6.69 -39.22 -0.26 1.36 16 19 C -0.21 -2.31 9.04 -39.43 -0.36 -2.67 16 20 C -0.08 -0.76 10.04 -39.61 -0.40 -1.16 16 21 C -0.16 -1.41 10.04 -39.56 -0.40 -1.81 16 22 C -0.08 -0.73 10.04 -39.60 -0.40 -1.13 16 23 C -0.16 -1.61 9.99 -39.44 -0.39 -2.01 16 24 C 0.10 1.70 6.31 -3.93 -0.02 1.68 16 25 C -0.13 -2.67 5.14 -26.83 -0.14 -2.81 16 26 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 27 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.08 1.39 7.00 -51.93 -0.36 1.03 16 32 H 0.10 1.17 7.95 -51.93 -0.41 0.75 16 33 H 0.11 1.30 7.68 -51.93 -0.40 0.90 16 34 H 0.07 0.92 7.61 -51.93 -0.39 0.52 16 35 H 0.07 0.88 7.63 -51.93 -0.40 0.48 16 36 H 0.13 1.40 6.30 -52.49 -0.33 1.07 16 37 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 38 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 39 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 40 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 41 H 0.07 0.99 5.93 -51.93 -0.31 0.68 16 42 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.11 2.52 6.03 -51.93 -0.31 2.21 16 44 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 355.04 15.07 5.35 5.35 Total: -1.00 -29.04 355.04 -9.53 -38.57 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -6.69 Total: 2.27 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: -3.17 Total: -12.89 kcal Atomic # 7 Polarization: -34.26 SS G_CDS: 0.11 Total: -34.15 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: -0.11 Total: -14.74 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.04 -9.53 -38.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397201812.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.389 kcal (2) G-P(sol) polarization free energy of solvation -29.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds