Wall clock time and date at job start Tue Mar 31 2020 08:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86796 * 120.00383 * 2 1 4 4 H 1.48502 * 109.47121 * 239.99860 * 3 2 1 5 5 H 1.48505 * 109.47245 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47730 * 119.99778 * 3 2 1 7 7 C 1.37882 * 119.99882 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00291 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99769 * 0.02562 * 7 2 1 10 10 C 1.53038 * 109.45990 * 179.97438 * 9 7 2 11 11 C 1.53200 * 109.31353 * 178.63052 * 10 9 7 12 12 N 1.46923 * 108.77454 * 54.63255 * 11 10 9 13 13 C 1.34774 * 120.62774 * 126.37131 * 12 11 10 14 14 O 1.21279 * 120.00472 * 359.97438 * 13 12 11 15 15 C 1.50706 * 120.00020 * 179.97438 * 13 12 11 16 16 C 1.52997 * 109.47238 * 180.02562 * 15 13 12 17 17 O 1.42895 * 109.47269 * 179.97438 * 16 15 13 18 18 C 1.35901 * 117.00475 * 179.97438 * 17 16 15 19 19 C 1.38733 * 120.05082 * 359.72425 * 18 17 16 20 20 C 1.38148 * 119.93909 * 179.74153 * 19 18 17 21 21 C 1.38258 * 120.05823 * 0.50997 * 20 19 18 22 22 C 1.38274 * 120.10971 * 359.76981 * 21 20 19 23 23 C 1.38140 * 120.05508 * 359.97198 * 22 21 20 24 24 C 1.46923 * 118.74019 * 306.64173 * 12 11 10 25 25 C 1.52767 * 109.00740 * 53.31208 * 24 12 11 26 26 H 0.97006 * 119.99863 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.46087 * 299.97142 * 9 7 2 28 28 H 1.09000 * 109.50221 * 58.67378 * 10 9 7 29 29 H 1.09001 * 109.52295 * 298.59086 * 10 9 7 30 30 H 1.08995 * 109.57907 * 294.84221 * 11 10 9 31 31 H 1.08998 * 109.70015 * 174.49128 * 11 10 9 32 32 H 1.09001 * 109.46953 * 299.99667 * 15 13 12 33 33 H 1.09000 * 109.47318 * 59.99264 * 15 13 12 34 34 H 1.09001 * 109.46832 * 299.99686 * 16 15 13 35 35 H 1.09004 * 109.47261 * 59.99705 * 16 15 13 36 36 H 1.08001 * 120.03038 * 359.97438 * 19 18 17 37 37 H 1.08001 * 119.97131 * 180.27561 * 20 19 18 38 38 H 1.07999 * 119.94945 * 179.73692 * 21 20 19 39 39 H 1.08005 * 119.96865 * 179.97438 * 22 21 20 40 40 H 1.08004 * 120.02325 * 179.97438 * 23 22 21 41 41 H 1.08997 * 109.58651 * 173.14483 * 24 12 11 42 42 H 1.08992 * 109.58942 * 293.57315 * 24 12 11 43 43 H 1.08998 * 109.56180 * 185.54829 * 25 24 12 44 44 H 1.09003 * 109.35696 * 65.49583 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.1029 1.6962 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2455 -3.6622 0.0005 11 6 1.4764 -4.9867 0.0351 12 7 0.5222 -5.0087 -1.0819 13 6 0.5120 -6.0343 -1.9562 14 8 1.2957 -6.9506 -1.8253 15 6 -0.4733 -6.0427 -3.0965 16 6 -0.2753 -7.3088 -3.9323 17 8 -1.2099 -7.3170 -5.0132 18 6 -1.1669 -8.3806 -5.8581 19 6 -0.2403 -9.3928 -5.6543 20 6 -0.2021 -10.4755 -6.5114 21 6 -1.0794 -10.5459 -7.5777 22 6 -2.0001 -9.5355 -7.7863 23 6 -2.0458 -8.4533 -6.9290 24 6 -0.4166 -3.8884 -1.2312 25 6 0.3700 -2.5789 -1.2484 26 1 -0.4850 0.8401 -0.0004 27 1 0.6243 -2.5567 0.8906 28 1 2.8880 -3.5916 0.8782 29 1 2.8559 -3.6195 -0.9015 30 1 0.9369 -5.0713 0.9784 31 1 2.1733 -5.8190 -0.0632 32 1 -1.4884 -6.0248 -2.6997 33 1 -0.3124 -5.1648 -3.7222 34 1 0.7398 -7.3271 -4.3291 35 1 -0.4366 -8.1864 -3.3063 36 1 0.4482 -9.3361 -4.8241 37 1 0.5161 -11.2659 -6.3506 38 1 -1.0452 -11.3911 -8.2491 39 1 -2.6840 -9.5926 -8.6203 40 1 -2.7648 -7.6642 -7.0927 41 1 -0.9668 -3.9948 -2.1661 42 1 -1.1137 -3.8816 -0.3934 43 1 -0.3225 -1.7373 -1.2597 44 1 0.9977 -2.5462 -2.1390 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397201812.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:47:40 Heat of formation + Delta-G solvation = -75.381627 kcal Electronic energy + Delta-G solvation = -24003.345246 eV Core-core repulsion = 20498.694353 eV Total energy + Delta-G solvation = -3504.650894 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.40529 -40.85089 -38.64750 -38.20755 -35.35605 -33.73650 -32.70397 -31.89914 -31.59885 -30.42702 -28.13115 -26.01152 -24.50332 -23.86327 -23.37943 -22.60865 -21.35308 -19.86154 -19.29220 -18.52749 -17.90124 -17.46537 -16.92755 -16.76501 -16.59619 -16.43474 -16.14533 -15.30998 -14.91422 -14.83245 -14.71132 -14.40902 -14.30700 -14.25876 -14.13542 -13.72777 -13.33700 -13.12058 -12.92977 -12.80423 -12.64503 -12.48821 -12.46469 -12.14893 -11.93528 -11.79360 -11.72254 -11.48011 -11.05597 -11.01425 -10.71780 -10.39295 -9.94446 -9.58938 -9.18002 -8.08193 -6.21025 0.40042 0.49532 1.42480 1.43391 1.50382 1.53349 1.73836 2.41561 2.43999 2.85705 3.18538 3.52539 3.74603 3.88208 3.93468 4.02441 4.12824 4.25637 4.26962 4.32913 4.37580 4.46354 4.48869 4.53124 4.57918 4.66639 4.69249 4.76091 4.81386 4.86621 4.98059 5.10183 5.18246 5.24270 5.37806 5.42736 5.49841 5.52743 5.61192 5.64538 5.86748 5.98843 6.13765 6.38902 6.39994 6.45931 6.88163 7.07654 7.46571 8.95032 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.027444 B = 0.002486 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.010185 B =11259.473943 C =11814.225756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.018 3.982 3 Si 0.947 3.053 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.275 1.275 7 C -0.536 4.536 8 H 0.046 0.954 9 C 0.044 3.956 10 C -0.114 4.114 11 C 0.117 3.883 12 N -0.601 5.601 13 C 0.518 3.482 14 O -0.587 6.587 15 C -0.132 4.132 16 C 0.084 3.916 17 O -0.325 6.325 18 C 0.107 3.893 19 C -0.224 4.224 20 C -0.089 4.089 21 C -0.162 4.162 22 C -0.083 4.083 23 C -0.167 4.167 24 C 0.111 3.889 25 C -0.118 4.118 26 H 0.262 0.738 27 H 0.004 0.996 28 H 0.063 0.937 29 H 0.041 0.959 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.125 0.875 33 H 0.116 0.884 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.126 0.874 37 H 0.143 0.857 38 H 0.149 0.851 39 H 0.156 0.844 40 H 0.138 0.862 41 H 0.103 0.897 42 H 0.070 0.930 43 H 0.081 0.919 44 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.658 -17.530 -12.515 22.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.181 4.181 3 Si 0.773 3.227 4 H -0.201 1.201 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.574 4.574 8 H 0.064 0.936 9 C 0.026 3.974 10 C -0.152 4.152 11 C -0.006 4.006 12 N -0.332 5.332 13 C 0.307 3.693 14 O -0.469 6.469 15 C -0.171 4.171 16 C 0.009 3.991 17 O -0.240 6.240 18 C 0.062 3.938 19 C -0.243 4.243 20 C -0.107 4.107 21 C -0.180 4.180 22 C -0.101 4.101 23 C -0.185 4.185 24 C -0.010 4.010 25 C -0.156 4.156 26 H 0.071 0.929 27 H 0.023 0.977 28 H 0.082 0.918 29 H 0.060 0.940 30 H 0.090 0.910 31 H 0.100 0.900 32 H 0.143 0.857 33 H 0.134 0.866 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.144 0.856 37 H 0.160 0.840 38 H 0.167 0.833 39 H 0.174 0.826 40 H 0.156 0.844 41 H 0.121 0.879 42 H 0.088 0.912 43 H 0.100 0.900 44 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -5.532 -17.685 -12.419 22.307 hybrid contribution 0.840 1.277 0.512 1.612 sum -4.692 -16.408 -11.906 20.809 Atomic orbital electron populations 1.69924 1.06737 1.27215 1.51117 1.25613 0.95709 1.01868 0.94881 0.85785 0.78557 0.79761 0.78557 1.20107 1.20820 1.20036 1.21517 0.92881 0.92306 1.50700 0.93551 1.18618 0.93083 0.91869 0.93856 1.21857 0.98334 0.94378 1.00642 1.21602 0.91979 0.98219 0.88759 1.48253 1.36067 1.21134 1.27783 1.20652 0.84324 0.81201 0.83105 1.90644 1.43155 1.37354 1.75786 1.21453 1.00899 0.99780 0.95012 1.22304 0.91888 0.98255 0.86664 1.85946 1.57245 1.41920 1.38860 1.19343 0.96012 0.87145 0.91334 1.21508 1.02040 0.96892 1.03880 1.21288 0.98568 0.96937 0.93858 1.21451 0.96920 1.00576 0.99098 1.21348 0.98109 0.92195 0.98401 1.20742 1.01131 1.01583 0.95074 1.21899 0.91031 0.85068 1.03031 1.21737 0.99505 0.96345 0.98058 0.92883 0.97746 0.91813 0.94001 0.91006 0.90011 0.85666 0.86578 0.91951 0.91390 0.85593 0.83969 0.83342 0.82644 0.84427 0.87852 0.91166 0.90050 0.95284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.56 11.30 21.45 0.24 -49.32 16 2 C 0.02 0.98 5.30 84.66 0.45 1.43 16 3 Si 0.95 42.44 29.54 68.60 2.03 44.47 16 4 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 6 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 7 C -0.54 -28.54 8.56 25.60 0.22 -28.32 16 8 H 0.05 2.47 7.74 -2.91 -0.02 2.45 16 9 C 0.04 2.08 2.07 -11.51 -0.02 2.06 16 10 C -0.11 -4.58 5.30 30.67 0.16 -4.41 16 11 C 0.12 4.06 6.44 86.37 0.56 4.61 16 12 N -0.60 -19.88 2.98 -819.75 -2.44 -22.32 16 13 C 0.52 16.25 7.70 87.66 0.67 16.93 16 14 O -0.59 -21.69 15.39 -3.02 -0.05 -21.74 16 15 C -0.13 -3.15 4.42 29.85 0.13 -3.02 16 16 C 0.08 2.06 4.03 71.98 0.29 2.35 16 17 O -0.33 -8.11 10.14 -92.44 -0.94 -9.04 16 18 C 0.11 2.50 6.69 22.51 0.15 2.65 16 19 C -0.22 -4.88 9.04 22.37 0.20 -4.68 16 20 C -0.09 -1.53 10.04 22.25 0.22 -1.31 16 21 C -0.16 -2.37 10.04 22.28 0.22 -2.15 16 22 C -0.08 -1.24 10.04 22.26 0.22 -1.02 16 23 C -0.17 -3.25 9.99 22.36 0.22 -3.03 16 24 C 0.11 3.62 6.31 86.22 0.54 4.17 16 25 C -0.12 -5.03 5.14 30.53 0.16 -4.87 16 26 H 0.26 13.66 8.31 -92.70 -0.77 12.89 16 27 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 28 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 29 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.08 2.82 7.00 -2.39 -0.02 2.81 16 32 H 0.13 2.48 7.95 -2.39 -0.02 2.46 16 33 H 0.12 2.59 7.68 -2.39 -0.02 2.57 16 34 H 0.06 1.61 7.61 -2.39 -0.02 1.59 16 35 H 0.07 1.67 7.63 -2.38 -0.02 1.65 16 36 H 0.13 2.74 6.30 -2.91 -0.02 2.72 16 37 H 0.14 1.81 8.06 -2.91 -0.02 1.78 16 38 H 0.15 1.32 8.06 -2.91 -0.02 1.30 16 39 H 0.16 1.37 8.06 -2.91 -0.02 1.35 16 40 H 0.14 2.35 8.06 -2.91 -0.02 2.32 16 41 H 0.10 2.67 5.93 -2.39 -0.01 2.66 16 42 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 43 H 0.08 3.91 6.03 -2.39 -0.01 3.90 16 44 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -62.74 355.04 4.23 -58.51 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: 0.98 Total: 18.04 kcal Atomic # 6 Polarization: -23.02 SS G_CDS: 4.41 Total: -18.61 kcal Atomic # 7 Polarization: -69.44 SS G_CDS: -2.20 Total: -71.63 kcal Atomic # 8 Polarization: -29.80 SS G_CDS: -0.98 Total: -30.78 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -62.74 4.23 -58.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397201812.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.868 kcal (2) G-P(sol) polarization free energy of solvation -62.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds