Wall clock time and date at job start Tue Mar 31 2020 08:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00086 * 2 1 4 4 H 1.48501 * 109.47014 * 240.00363 * 3 2 1 5 5 H 1.48493 * 109.47425 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46783 * 120.00683 * 3 2 1 7 7 C 1.37879 * 119.99614 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99763 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00489 * 359.97438 * 7 2 1 10 10 C 1.53124 * 109.57230 * 60.29974 * 9 7 2 11 11 C 1.53034 * 109.27835 * 177.60727 * 10 9 7 12 12 N 1.46856 * 109.51147 * 300.80224 * 11 10 9 13 13 C 1.46900 * 110.99764 * 185.84403 * 12 11 10 14 14 C 1.50695 * 109.47002 * 184.20077 * 13 12 11 15 15 C 1.38257 * 119.99987 * 102.87709 * 14 13 12 16 16 C 1.38219 * 120.00192 * 179.97438 * 15 14 13 17 17 C 1.38258 * 119.99676 * 0.02562 * 16 15 14 18 18 C 1.38210 * 120.00318 * 359.97438 * 17 16 15 19 19 C 1.38221 * 120.00480 * 282.60555 * 14 13 12 20 20 C 1.50700 * 119.99625 * 359.97438 * 19 14 13 21 21 C 1.50709 * 109.46981 * 86.77746 * 20 19 14 22 22 O 1.20823 * 119.99987 * 0.02562 * 21 20 19 23 23 O 1.34226 * 119.99726 * 179.97438 * 21 20 19 24 24 C 1.46843 * 111.19556 * 61.75036 * 12 11 10 25 25 C 1.53039 * 109.52281 * 298.25556 * 24 12 11 26 26 H 0.96999 * 119.99857 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.52578 * 300.13562 * 9 7 2 28 28 H 1.08992 * 109.51068 * 57.65833 * 10 9 7 29 29 H 1.09009 * 109.49430 * 297.53737 * 10 9 7 30 30 H 1.08998 * 109.46182 * 180.79586 * 11 10 9 31 31 H 1.08998 * 109.46923 * 60.81399 * 11 10 9 32 32 H 1.08991 * 109.47469 * 304.20322 * 13 12 11 33 33 H 1.09002 * 109.46987 * 64.20513 * 13 12 11 34 34 H 1.08000 * 119.99734 * 0.02562 * 15 14 13 35 35 H 1.07999 * 119.99858 * 180.02562 * 16 15 14 36 36 H 1.07997 * 119.99486 * 179.97438 * 17 16 15 37 37 H 1.07997 * 119.99889 * 179.97438 * 18 17 16 38 38 H 1.08997 * 109.47100 * 206.77268 * 20 19 14 39 39 H 1.08997 * 109.47367 * 326.77913 * 20 19 14 40 40 H 0.96696 * 117.00122 * 180.02562 * 23 21 20 41 41 H 1.08998 * 109.46651 * 58.27715 * 24 12 11 42 42 H 1.08997 * 109.46026 * 178.25127 * 24 12 11 43 43 H 1.09006 * 109.49869 * 179.12356 * 25 24 12 44 44 H 1.09001 * 109.50519 * 299.19860 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2843 2.7465 0.0006 6 1 3.1031 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 0.3750 -2.5857 -1.2534 11 6 -0.3410 -3.9380 -1.2769 12 7 0.6528 -5.0193 -1.2772 13 6 0.0063 -6.3284 -1.4391 14 6 1.0426 -7.4171 -1.3315 15 6 1.1513 -8.1555 -0.1677 16 6 2.1015 -9.1545 -0.0692 17 6 2.9436 -9.4149 -1.1343 18 6 2.8350 -8.6768 -2.2978 19 6 1.8808 -7.6814 -2.3983 20 6 1.7579 -6.8810 -3.6693 21 6 2.5928 -5.6312 -3.5586 22 8 3.2233 -5.4131 -2.5513 23 8 2.6367 -4.7609 -4.5796 24 6 1.4749 -4.9851 -0.0610 25 6 2.2449 -3.6639 -0.0011 26 1 -0.4850 0.8400 0.0004 27 1 0.6225 -2.5570 0.8882 28 1 0.9994 -2.4891 -2.1416 29 1 -0.3629 -1.7835 -1.2375 30 1 -0.9546 -4.0085 -2.1750 31 1 -0.9757 -4.0284 -0.3954 32 1 -0.7435 -6.4622 -0.6594 33 1 -0.4731 -6.3785 -2.4167 34 1 0.4932 -7.9523 0.6642 35 1 2.1861 -9.7315 0.8398 36 1 3.6863 -10.1952 -1.0572 37 1 3.4931 -8.8800 -3.1296 38 1 2.1086 -7.4789 -4.5105 39 1 0.7146 -6.6081 -3.8274 40 1 3.1862 -3.9740 -4.4623 41 1 0.8317 -5.0707 0.8148 42 1 2.1803 -5.8160 -0.0761 43 1 2.8431 -3.6323 0.9096 44 1 2.8992 -3.5843 -0.8692 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397309552.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:02:03 Heat of formation + Delta-G solvation = -70.308901 kcal Electronic energy + Delta-G solvation = -26051.901528 eV Core-core repulsion = 22547.470605 eV Total energy + Delta-G solvation = -3504.430924 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.33692 -39.07279 -37.75723 -35.59883 -34.21687 -32.91675 -31.89000 -30.49456 -29.46703 -28.05451 -26.46869 -24.35519 -22.67562 -22.14295 -21.60096 -21.12802 -19.91357 -18.46059 -17.62077 -16.47091 -16.31746 -16.09142 -15.99904 -15.16013 -14.97975 -14.80828 -14.45134 -13.99720 -13.48722 -13.23777 -12.98911 -12.84473 -12.70508 -12.38393 -12.32897 -12.16758 -11.94051 -11.71869 -11.23819 -11.01289 -10.97199 -10.88392 -10.82737 -10.64854 -10.39440 -10.13537 -10.00406 -9.89029 -9.32992 -8.87955 -8.73668 -8.66146 -8.59173 -8.22606 -7.64750 -5.91358 -3.95879 1.32333 1.41237 2.77542 3.36007 3.38289 3.40158 3.43539 3.90669 4.49805 4.59952 4.63791 4.79826 4.92720 5.04220 5.19559 5.32685 5.38544 5.43300 5.58750 5.67735 5.69479 5.77383 5.90928 6.03394 6.06488 6.09491 6.22623 6.29984 6.45776 6.51307 6.54013 6.64520 6.70027 6.79539 6.98270 7.02396 7.04322 7.23002 7.30080 7.51895 7.71802 7.77886 7.90203 8.14631 8.23087 8.40675 8.57258 9.07847 9.67898 11.14799 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.020349 B = 0.004411 C = 0.004132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.652309 B = 6346.149134 C = 6775.182201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.060 3.940 3 Si 0.888 3.112 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.279 1.279 7 C -0.507 4.507 8 H 0.052 0.948 9 C 0.048 3.952 10 C -0.099 4.099 11 C 0.056 3.944 12 N -0.522 5.522 13 C 0.083 3.917 14 C -0.054 4.054 15 C -0.114 4.114 16 C -0.117 4.117 17 C -0.125 4.125 18 C -0.106 4.106 19 C -0.058 4.058 20 C -0.067 4.067 21 C 0.483 3.517 22 O -0.479 6.479 23 O -0.528 6.528 24 C 0.070 3.930 25 C -0.102 4.102 26 H 0.258 0.742 27 H 0.017 0.983 28 H 0.040 0.960 29 H 0.091 0.909 30 H 0.053 0.947 31 H 0.022 0.978 32 H 0.036 0.964 33 H 0.077 0.923 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.101 0.899 39 H 0.111 0.889 40 H 0.410 0.590 41 H 0.013 0.987 42 H 0.065 0.935 43 H 0.042 0.958 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.278 -18.186 -6.830 19.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.545 4.545 8 H 0.071 0.929 9 C 0.030 3.970 10 C -0.137 4.137 11 C -0.071 4.071 12 N -0.247 5.247 13 C -0.045 4.045 14 C -0.054 4.054 15 C -0.133 4.133 16 C -0.135 4.135 17 C -0.143 4.143 18 C -0.124 4.124 19 C -0.059 4.059 20 C -0.104 4.104 21 C 0.323 3.677 22 O -0.363 6.363 23 O -0.341 6.341 24 C -0.058 4.058 25 C -0.139 4.139 26 H 0.068 0.932 27 H 0.035 0.965 28 H 0.058 0.942 29 H 0.109 0.891 30 H 0.071 0.929 31 H 0.040 0.960 32 H 0.054 0.946 33 H 0.096 0.904 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.119 0.881 39 H 0.129 0.871 40 H 0.268 0.732 41 H 0.032 0.968 42 H 0.083 0.917 43 H 0.060 0.940 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.360 -18.251 -6.977 19.586 hybrid contribution 0.230 1.342 0.886 1.624 sum 1.590 -16.910 -6.091 18.043 Atomic orbital electron populations 1.69870 1.05829 1.26250 1.51372 1.24959 0.94812 0.98874 0.95348 0.86719 0.79627 0.83437 0.78542 1.20370 1.21421 1.20433 1.21193 0.92816 0.90739 1.49735 0.92948 1.18679 0.92749 0.91911 0.93697 1.21602 0.99999 0.92758 0.99335 1.22301 0.93100 0.93260 0.98478 1.62125 1.22729 1.00537 1.39263 1.21145 0.93502 0.88714 1.01125 1.19642 0.96953 0.95647 0.93162 1.21043 0.99060 0.96086 0.97077 1.21084 0.95924 0.97975 0.98549 1.21022 0.99538 1.00132 0.93594 1.20936 0.97382 0.95936 0.98175 1.19052 0.96400 0.95985 0.94476 1.20107 1.01703 0.91705 0.96886 1.22750 0.80291 0.84214 0.80413 1.90742 1.41291 1.74712 1.29577 1.84418 1.68655 1.35557 1.45445 1.22042 0.95414 0.99817 0.88510 1.21618 0.98570 0.93441 1.00316 0.93164 0.96501 0.94151 0.89124 0.92881 0.95997 0.94580 0.90439 0.86279 0.86281 0.86295 0.86317 0.88074 0.87087 0.73169 0.96850 0.91690 0.93968 0.91825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.82 11.37 55.43 0.63 -25.19 16 2 C 0.06 1.70 5.31 -17.82 -0.09 1.61 16 3 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.51 -14.33 8.56 -34.44 -0.29 -14.62 16 8 H 0.05 1.48 7.75 -52.48 -0.41 1.08 16 9 C 0.05 1.24 2.16 -91.65 -0.20 1.04 16 10 C -0.10 -2.36 5.12 -26.65 -0.14 -2.50 16 11 C 0.06 1.10 5.46 -3.83 -0.02 1.08 16 12 N -0.52 -9.30 3.27 -236.12 -0.77 -10.07 16 13 C 0.08 1.19 4.61 -4.98 -0.02 1.17 16 14 C -0.05 -0.73 3.84 -104.62 -0.40 -1.13 16 15 C -0.11 -1.45 8.80 -39.58 -0.35 -1.80 16 16 C -0.12 -1.32 10.05 -39.58 -0.40 -1.72 16 17 C -0.12 -1.35 10.05 -39.58 -0.40 -1.75 16 18 C -0.11 -1.22 9.69 -39.59 -0.38 -1.60 16 19 C -0.06 -0.74 4.37 -104.62 -0.46 -1.20 16 20 C -0.07 -0.77 5.47 -29.03 -0.16 -0.93 16 21 C 0.48 7.06 7.49 36.01 0.27 7.33 16 22 O -0.48 -8.69 14.58 -18.75 -0.27 -8.96 16 23 O -0.53 -6.92 13.42 -39.25 -0.53 -7.44 16 24 C 0.07 1.36 4.35 -3.83 -0.02 1.35 16 25 C -0.10 -2.32 5.32 -26.65 -0.14 -2.47 16 26 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 27 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.09 2.41 6.18 -51.92 -0.32 2.09 16 30 H 0.05 0.95 8.12 -51.93 -0.42 0.52 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.04 0.51 7.97 -51.93 -0.41 0.10 16 33 H 0.08 0.99 6.57 -51.93 -0.34 0.65 16 34 H 0.12 1.41 8.02 -52.49 -0.42 0.99 16 35 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 36 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 37 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 38 H 0.10 0.87 8.06 -51.93 -0.42 0.45 16 39 H 0.11 1.20 6.31 -51.93 -0.33 0.88 16 40 H 0.41 4.40 9.10 45.56 0.41 4.82 16 41 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 42 H 0.06 1.26 6.13 -51.93 -0.32 0.94 16 43 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.06 1.53 7.23 -51.93 -0.38 1.16 16 LS Contribution 348.77 15.07 5.26 5.26 Total: -1.00 -31.89 348.77 -9.78 -41.66 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -5.87 Total: 4.19 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: -3.20 Total: -16.13 kcal Atomic # 7 Polarization: -35.13 SS G_CDS: -0.14 Total: -35.27 kcal Atomic # 8 Polarization: -15.61 SS G_CDS: -0.80 Total: -16.41 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.89 -9.78 -41.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397309552.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.648 kcal (2) G-P(sol) polarization free energy of solvation -31.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds