Wall clock time and date at job start Tue Mar 31 2020 08:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00086 * 2 1 4 4 H 1.48501 * 109.47014 * 240.00363 * 3 2 1 5 5 H 1.48493 * 109.47425 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46783 * 120.00683 * 3 2 1 7 7 C 1.37879 * 119.99614 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99763 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00489 * 359.97438 * 7 2 1 10 10 C 1.53124 * 109.57230 * 60.29974 * 9 7 2 11 11 C 1.53034 * 109.27835 * 177.60727 * 10 9 7 12 12 N 1.46856 * 109.51147 * 300.80224 * 11 10 9 13 13 C 1.46900 * 110.99764 * 185.84403 * 12 11 10 14 14 C 1.50695 * 109.47002 * 184.20077 * 13 12 11 15 15 C 1.38257 * 119.99987 * 102.87709 * 14 13 12 16 16 C 1.38219 * 120.00192 * 179.97438 * 15 14 13 17 17 C 1.38258 * 119.99676 * 0.02562 * 16 15 14 18 18 C 1.38210 * 120.00318 * 359.97438 * 17 16 15 19 19 C 1.38221 * 120.00480 * 282.60555 * 14 13 12 20 20 C 1.50700 * 119.99625 * 359.97438 * 19 14 13 21 21 C 1.50709 * 109.46981 * 86.77746 * 20 19 14 22 22 O 1.20823 * 119.99987 * 0.02562 * 21 20 19 23 23 O 1.34226 * 119.99726 * 179.97438 * 21 20 19 24 24 C 1.46843 * 111.19556 * 61.75036 * 12 11 10 25 25 C 1.53039 * 109.52281 * 298.25556 * 24 12 11 26 26 H 0.96999 * 119.99857 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.52578 * 300.13562 * 9 7 2 28 28 H 1.08992 * 109.51068 * 57.65833 * 10 9 7 29 29 H 1.09009 * 109.49430 * 297.53737 * 10 9 7 30 30 H 1.08998 * 109.46182 * 180.79586 * 11 10 9 31 31 H 1.08998 * 109.46923 * 60.81399 * 11 10 9 32 32 H 1.08991 * 109.47469 * 304.20322 * 13 12 11 33 33 H 1.09002 * 109.46987 * 64.20513 * 13 12 11 34 34 H 1.08000 * 119.99734 * 0.02562 * 15 14 13 35 35 H 1.07999 * 119.99858 * 180.02562 * 16 15 14 36 36 H 1.07997 * 119.99486 * 179.97438 * 17 16 15 37 37 H 1.07997 * 119.99889 * 179.97438 * 18 17 16 38 38 H 1.08997 * 109.47100 * 206.77268 * 20 19 14 39 39 H 1.08997 * 109.47367 * 326.77913 * 20 19 14 40 40 H 0.96696 * 117.00122 * 180.02562 * 23 21 20 41 41 H 1.08998 * 109.46651 * 58.27715 * 24 12 11 42 42 H 1.08997 * 109.46026 * 178.25127 * 24 12 11 43 43 H 1.09006 * 109.49869 * 179.12356 * 25 24 12 44 44 H 1.09001 * 109.50519 * 299.19860 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2843 2.7465 0.0006 6 1 3.1031 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 0.3750 -2.5857 -1.2534 11 6 -0.3410 -3.9380 -1.2769 12 7 0.6528 -5.0193 -1.2772 13 6 0.0063 -6.3284 -1.4391 14 6 1.0426 -7.4171 -1.3315 15 6 1.1513 -8.1555 -0.1677 16 6 2.1015 -9.1545 -0.0692 17 6 2.9436 -9.4149 -1.1343 18 6 2.8350 -8.6768 -2.2978 19 6 1.8808 -7.6814 -2.3983 20 6 1.7579 -6.8810 -3.6693 21 6 2.5928 -5.6312 -3.5586 22 8 3.2233 -5.4131 -2.5513 23 8 2.6367 -4.7609 -4.5796 24 6 1.4749 -4.9851 -0.0610 25 6 2.2449 -3.6639 -0.0011 26 1 -0.4850 0.8400 0.0004 27 1 0.6225 -2.5570 0.8882 28 1 0.9994 -2.4891 -2.1416 29 1 -0.3629 -1.7835 -1.2375 30 1 -0.9546 -4.0085 -2.1750 31 1 -0.9757 -4.0284 -0.3954 32 1 -0.7435 -6.4622 -0.6594 33 1 -0.4731 -6.3785 -2.4167 34 1 0.4932 -7.9523 0.6642 35 1 2.1861 -9.7315 0.8398 36 1 3.6863 -10.1952 -1.0572 37 1 3.4931 -8.8800 -3.1296 38 1 2.1086 -7.4789 -4.5105 39 1 0.7146 -6.6081 -3.8274 40 1 3.1862 -3.9740 -4.4623 41 1 0.8317 -5.0707 0.8148 42 1 2.1803 -5.8160 -0.0761 43 1 2.8431 -3.6323 0.9096 44 1 2.8992 -3.5843 -0.8692 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397309552.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:02:02 Heat of formation + Delta-G solvation = -88.852179 kcal Electronic energy + Delta-G solvation = -26052.705625 eV Core-core repulsion = 22547.470605 eV Total energy + Delta-G solvation = -3505.235021 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.38987 -40.20289 -39.23424 -36.71264 -35.91560 -34.08750 -33.40010 -31.99831 -31.11691 -29.05218 -28.06415 -25.97908 -23.88131 -23.51903 -23.22968 -22.30951 -20.96347 -20.29217 -18.71815 -18.45241 -17.46317 -17.12451 -17.02332 -16.72761 -16.32263 -16.01506 -15.94272 -15.35752 -14.93051 -14.71563 -14.42092 -14.20674 -14.11154 -13.78342 -13.50764 -13.28537 -13.15137 -13.06863 -12.95947 -12.82119 -12.56764 -12.24113 -12.14106 -12.08502 -11.89009 -11.85052 -11.60463 -11.35842 -11.21169 -10.77574 -10.66874 -10.37445 -9.66921 -9.56465 -9.10013 -8.08209 -6.21470 0.42828 0.51952 1.39766 1.41107 1.49010 1.68484 2.43111 2.44366 2.91185 3.17956 3.29268 3.70355 3.86408 4.02947 4.16552 4.26744 4.28530 4.37200 4.40646 4.45923 4.54761 4.59545 4.68345 4.76023 4.81062 4.81739 4.82812 4.91915 4.96690 5.13147 5.18212 5.21968 5.25436 5.38306 5.56313 5.59529 5.62175 5.65690 5.75972 5.97373 6.01373 6.04747 6.15754 6.32975 6.34174 6.41984 6.88524 7.34001 7.45747 8.96132 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.020349 B = 0.004411 C = 0.004132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.652309 B = 6346.149134 C = 6775.182201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.016 3.984 3 Si 0.952 3.048 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.275 1.275 7 C -0.534 4.534 8 H 0.044 0.956 9 C 0.048 3.952 10 C -0.086 4.086 11 C 0.066 3.934 12 N -0.520 5.520 13 C 0.084 3.916 14 C -0.074 4.074 15 C -0.128 4.128 16 C -0.123 4.123 17 C -0.125 4.125 18 C -0.113 4.113 19 C -0.068 4.068 20 C -0.065 4.065 21 C 0.481 3.519 22 O -0.522 6.522 23 O -0.526 6.526 24 C 0.087 3.913 25 C -0.091 4.091 26 H 0.261 0.739 27 H -0.017 1.017 28 H 0.028 0.972 29 H 0.061 0.939 30 H 0.079 0.921 31 H 0.014 0.986 32 H 0.039 0.961 33 H 0.098 0.902 34 H 0.120 0.880 35 H 0.140 0.860 36 H 0.145 0.855 37 H 0.140 0.860 38 H 0.134 0.866 39 H 0.120 0.880 40 H 0.417 0.583 41 H 0.008 0.992 42 H 0.071 0.929 43 H 0.033 0.967 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.671 -19.780 -7.951 21.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.183 4.183 3 Si 0.778 3.222 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.200 1.200 7 C -0.572 4.572 8 H 0.062 0.938 9 C 0.029 3.971 10 C -0.125 4.125 11 C -0.061 4.061 12 N -0.244 5.244 13 C -0.043 4.043 14 C -0.074 4.074 15 C -0.147 4.147 16 C -0.141 4.141 17 C -0.143 4.143 18 C -0.131 4.131 19 C -0.069 4.069 20 C -0.101 4.101 21 C 0.324 3.676 22 O -0.409 6.409 23 O -0.340 6.340 24 C -0.041 4.041 25 C -0.129 4.129 26 H 0.070 0.930 27 H 0.001 0.999 28 H 0.046 0.954 29 H 0.080 0.920 30 H 0.097 0.903 31 H 0.032 0.968 32 H 0.057 0.943 33 H 0.116 0.884 34 H 0.138 0.862 35 H 0.157 0.843 36 H 0.162 0.838 37 H 0.158 0.842 38 H 0.152 0.848 39 H 0.138 0.862 40 H 0.277 0.723 41 H 0.026 0.974 42 H 0.090 0.910 43 H 0.052 0.948 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.746 -19.857 -8.119 21.524 hybrid contribution 0.140 1.798 1.229 2.182 sum 1.886 -18.059 -6.890 19.421 Atomic orbital electron populations 1.70002 1.07032 1.27107 1.51405 1.25697 0.95688 1.02130 0.94756 0.85712 0.78501 0.79305 0.78724 1.19644 1.20612 1.20023 1.21500 0.92682 0.92397 1.50606 0.93801 1.18629 0.93003 0.92373 0.93073 1.21321 0.98850 0.94663 0.97633 1.22088 0.92969 0.91719 0.99371 1.62017 1.22450 1.01978 1.37983 1.21212 0.93870 0.86850 1.02341 1.19631 0.97649 0.95993 0.94141 1.21203 0.99756 0.96745 0.96975 1.21383 0.95392 0.97651 0.99630 1.21402 0.99543 1.00289 0.93090 1.21268 0.97186 0.95482 0.99164 1.19237 0.96546 0.96457 0.94634 1.20234 1.01652 0.90551 0.97711 1.23416 0.79676 0.84783 0.79756 1.90729 1.43268 1.75763 1.31135 1.84413 1.68655 1.35883 1.45041 1.21772 0.95366 0.97768 0.89222 1.21441 0.97896 0.94342 0.99221 0.93029 0.99892 0.95351 0.92006 0.90305 0.96799 0.94291 0.88382 0.86187 0.84253 0.83752 0.84223 0.84768 0.86215 0.72322 0.97412 0.91028 0.94804 0.93125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.04 11.37 21.45 0.24 -53.80 16 2 C 0.02 0.90 5.31 84.66 0.45 1.35 16 3 Si 0.95 44.98 29.54 68.60 2.03 47.01 16 4 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 5 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 6 H -0.27 -12.75 7.11 99.48 0.71 -12.05 16 7 C -0.53 -31.14 8.56 25.60 0.22 -30.92 16 8 H 0.04 2.56 7.75 -2.91 -0.02 2.54 16 9 C 0.05 2.56 2.16 -11.46 -0.02 2.53 16 10 C -0.09 -4.24 5.12 30.65 0.16 -4.08 16 11 C 0.07 2.59 5.46 86.32 0.47 3.06 16 12 N -0.52 -18.20 3.27 -900.95 -2.94 -21.14 16 13 C 0.08 2.29 4.61 85.56 0.39 2.68 16 14 C -0.07 -1.88 3.84 -19.87 -0.08 -1.95 16 15 C -0.13 -3.06 8.80 22.27 0.20 -2.86 16 16 C -0.12 -2.48 10.05 22.27 0.22 -2.26 16 17 C -0.13 -2.35 10.05 22.27 0.22 -2.13 16 18 C -0.11 -2.27 9.69 22.27 0.22 -2.06 16 19 C -0.07 -1.57 4.37 -19.86 -0.09 -1.66 16 20 C -0.06 -1.32 5.47 29.10 0.16 -1.16 16 21 C 0.48 13.38 7.49 71.24 0.53 13.91 16 22 O -0.52 -18.66 14.58 21.97 0.32 -18.34 16 23 O -0.53 -13.14 13.42 -51.38 -0.69 -13.83 16 24 C 0.09 3.41 4.35 86.33 0.38 3.79 16 25 C -0.09 -4.29 5.32 30.64 0.16 -4.13 16 26 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 27 H -0.02 -1.02 8.14 -2.38 -0.02 -1.04 16 28 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.06 3.39 6.18 -2.38 -0.01 3.37 16 30 H 0.08 2.69 8.12 -2.39 -0.02 2.67 16 31 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.04 1.05 7.97 -2.39 -0.02 1.03 16 33 H 0.10 2.26 6.57 -2.39 -0.02 2.24 16 34 H 0.12 2.73 8.02 -2.91 -0.02 2.70 16 35 H 0.14 2.16 8.06 -2.91 -0.02 2.13 16 36 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16 37 H 0.14 2.13 8.06 -2.91 -0.02 2.11 16 38 H 0.13 1.82 8.06 -2.39 -0.02 1.80 16 39 H 0.12 2.24 6.31 -2.39 -0.02 2.22 16 40 H 0.42 8.78 9.10 -74.06 -0.67 8.11 16 41 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 42 H 0.07 2.76 6.13 -2.39 -0.01 2.75 16 43 H 0.03 1.59 8.14 -2.38 -0.02 1.57 16 44 H 0.05 2.51 7.23 -2.39 -0.02 2.49 16 Total: -1.00 -70.12 348.77 2.88 -67.24 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: 0.33 Total: 18.73 kcal Atomic # 6 Polarization: -29.47 SS G_CDS: 3.59 Total: -25.88 kcal Atomic # 7 Polarization: -72.24 SS G_CDS: -2.70 Total: -74.94 kcal Atomic # 8 Polarization: -31.80 SS G_CDS: -0.37 Total: -32.17 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -70.12 2.88 -67.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397309552.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.615 kcal (2) G-P(sol) polarization free energy of solvation -70.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds