Wall clock time and date at job start Tue Mar 31 2020 08:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86797 * 120.00293 * 2 1 4 4 H 1.48495 * 109.47222 * 275.41275 * 3 2 1 5 5 H 1.48503 * 109.46947 * 35.41328 * 3 2 1 6 6 H 1.48504 * 109.47122 * 155.41333 * 3 2 1 7 7 C 1.39945 * 119.99676 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00388 * 341.71916 * 7 2 1 9 9 C 1.41392 * 120.00071 * 161.71500 * 7 2 1 10 10 C 1.40716 * 120.24802 * 330.23912 * 9 7 2 11 11 C 1.37610 * 119.74899 * 179.69783 * 10 9 7 12 12 C 1.38632 * 120.24865 * 0.27687 * 11 10 9 13 13 C 1.50706 * 119.74902 * 179.97438 * 12 11 10 14 14 N 1.46894 * 109.47221 * 90.00252 * 13 12 11 15 15 C 1.46839 * 111.00635 * 45.79501 * 14 13 12 16 16 C 1.53038 * 109.57716 * 185.99600 * 15 14 13 17 17 C 1.53145 * 109.25738 * 300.65540 * 16 15 14 18 18 C 1.53049 * 109.12138 * 57.42269 * 17 16 15 19 19 C 1.46873 * 110.99836 * 170.00365 * 14 13 12 20 20 O 1.43672 * 109.40546 * 62.76172 * 18 17 16 21 21 C 1.44802 * 104.78319 * 95.56294 * 20 18 17 22 22 C 1.54923 * 101.73142 * 36.03107 * 21 20 18 23 23 O 1.43273 * 109.65536 * 182.13164 * 18 17 16 24 24 C 1.38636 * 120.50095 * 359.97438 * 12 11 10 25 25 C 1.37615 * 120.25006 * 0.02593 * 24 12 11 26 26 H 0.97002 * 119.99654 * 0.02562 * 1 2 3 27 27 H 1.08005 * 120.11915 * 359.97438 * 10 9 7 28 28 H 1.08004 * 119.87883 * 180.25642 * 11 10 9 29 29 H 1.09001 * 109.46772 * 210.00435 * 13 12 11 30 30 H 1.09000 * 109.46651 * 329.99885 * 13 12 11 31 31 H 1.09001 * 109.45273 * 306.03036 * 15 14 13 32 32 H 1.09004 * 109.45047 * 65.96450 * 15 14 13 33 33 H 1.08994 * 109.50459 * 180.71959 * 16 15 14 34 34 H 1.08998 * 109.50358 * 60.59165 * 16 15 14 35 35 H 1.08996 * 109.52809 * 297.52467 * 17 16 15 36 36 H 1.09003 * 109.58331 * 177.34855 * 17 16 15 37 37 H 1.08999 * 109.46895 * 294.42782 * 19 14 13 38 38 H 1.08997 * 109.47326 * 54.41897 * 19 14 13 39 39 H 1.08997 * 110.97295 * 277.92318 * 21 20 18 40 40 H 1.09004 * 111.00721 * 154.15487 * 21 20 18 41 41 H 1.09001 * 110.69162 * 206.09595 * 22 21 20 42 42 H 1.09003 * 110.69206 * 82.89570 * 22 21 20 43 43 H 1.08002 * 119.87220 * 179.97438 * 24 12 11 44 44 H 1.07999 * 120.12843 * 179.97438 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3754 2.1124 -1.3938 5 1 1.5016 2.6169 0.8113 6 1 3.5924 1.4097 0.5825 7 6 2.0079 -1.2120 -0.0005 8 1 1.5087 -2.1239 0.2924 9 6 3.3682 -1.2428 -0.3847 10 6 3.8633 -0.3107 -1.3154 11 6 5.1905 -0.3461 -1.6773 12 6 6.0376 -1.2990 -1.1330 13 6 7.4890 -1.3279 -1.5378 14 7 8.2671 -0.4724 -0.6320 15 6 7.8993 -0.7169 0.7684 16 6 8.6163 0.2904 1.6703 17 6 10.1298 0.1411 1.4909 18 6 10.4824 0.3454 0.0156 19 6 9.7089 -0.6573 -0.8424 20 8 10.1330 1.6822 -0.3780 21 6 11.3589 2.4404 -0.2401 22 6 12.4224 1.4016 -0.6763 23 8 11.8903 0.1590 -0.1737 24 6 5.5597 -2.2256 -0.2193 25 6 4.2361 -2.2090 0.1572 26 1 -0.4850 0.8401 -0.0004 27 1 3.2050 0.4326 -1.7406 28 1 5.5736 0.3710 -2.3883 29 1 7.8616 -2.3507 -1.4813 30 1 7.5886 -0.9609 -2.5593 31 1 6.8213 -0.6059 0.8853 32 1 8.1923 -1.7286 1.0493 33 1 8.3525 0.0998 2.7105 34 1 8.3154 1.3018 1.3973 35 1 10.4372 -0.8566 1.8043 36 1 10.6448 0.8877 2.0954 37 1 9.9903 -1.6714 -0.5587 38 1 9.9464 -0.4950 -1.8937 39 1 11.5140 2.7467 0.7943 40 1 11.3612 3.3039 -0.9053 41 1 13.3864 1.6215 -0.2174 42 1 12.5093 1.3722 -1.7624 43 1 6.2285 -2.9638 0.1981 44 1 3.8658 -2.9320 0.8689 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399039851.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:25:32 Heat of formation + Delta-G solvation = -82.217347 kcal Electronic energy + Delta-G solvation = -25362.023114 eV Core-core repulsion = 21857.075802 eV Total energy + Delta-G solvation = -3504.947313 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.82063 -40.13331 -38.51295 -35.97785 -35.68625 -34.33782 -32.38114 -31.64185 -31.41621 -28.98970 -28.47131 -25.87299 -24.41464 -23.78959 -23.29568 -23.23328 -21.59338 -20.61699 -19.34607 -18.15893 -17.84833 -17.39765 -16.71600 -16.47839 -16.37486 -15.96170 -15.63447 -15.54380 -15.22160 -14.81577 -14.76807 -14.57567 -14.31609 -14.08701 -13.80163 -13.73857 -13.47626 -13.28823 -13.10254 -12.97910 -12.62306 -12.50813 -12.41766 -12.07473 -12.04750 -11.80801 -11.74089 -11.53361 -11.33277 -11.07902 -10.96553 -10.48432 -9.48339 -9.42072 -9.08226 -8.90525 -6.48544 0.75084 0.89495 1.26422 1.39349 1.48683 2.12169 2.32831 2.58533 2.92105 3.20504 3.57830 3.64016 3.74577 3.76873 4.03154 4.10455 4.12323 4.20488 4.25646 4.34294 4.41816 4.47561 4.51134 4.56272 4.64659 4.66919 4.70765 4.75145 4.80849 4.83665 4.93736 4.95369 5.03518 5.07104 5.10782 5.20458 5.33332 5.35661 5.62694 5.75669 5.91770 6.04052 6.07329 6.17168 6.26853 6.32931 6.43034 6.75441 6.85430 8.18231 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.024304 B = 0.003710 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.777070 B = 7545.215191 C = 7966.870305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.050 3.950 3 Si 0.965 3.035 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.255 1.255 7 C -0.487 4.487 8 H 0.056 0.944 9 C 0.075 3.925 10 C -0.251 4.251 11 C -0.061 4.061 12 C -0.190 4.190 13 C 0.123 3.877 14 N -0.533 5.533 15 C 0.052 3.948 16 C -0.107 4.107 17 C -0.131 4.131 18 C 0.263 3.737 19 C 0.057 3.943 20 O -0.373 6.373 21 C 0.004 3.996 22 C 0.018 3.982 23 O -0.395 6.395 24 C -0.067 4.067 25 C -0.220 4.220 26 H 0.293 0.707 27 H 0.092 0.908 28 H 0.115 0.885 29 H 0.043 0.957 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.036 0.964 33 H 0.083 0.917 34 H 0.060 0.940 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.053 0.947 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.125 0.875 41 H 0.124 0.876 42 H 0.082 0.918 43 H 0.120 0.880 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.016 4.523 0.364 25.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.164 4.164 3 Si 0.789 3.211 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.179 1.179 7 C -0.516 4.516 8 H 0.074 0.926 9 C 0.073 3.927 10 C -0.270 4.270 11 C -0.080 4.080 12 C -0.192 4.192 13 C -0.003 4.003 14 N -0.258 5.258 15 C -0.076 4.076 16 C -0.145 4.145 17 C -0.169 4.169 18 C 0.185 3.815 19 C -0.071 4.071 20 O -0.294 6.294 21 C -0.072 4.072 22 C -0.058 4.058 23 O -0.316 6.316 24 C -0.086 4.086 25 C -0.239 4.239 26 H 0.103 0.897 27 H 0.110 0.890 28 H 0.133 0.867 29 H 0.061 0.939 30 H 0.098 0.902 31 H 0.087 0.913 32 H 0.054 0.946 33 H 0.101 0.899 34 H 0.079 0.921 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.071 0.929 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.143 0.857 41 H 0.142 0.858 42 H 0.100 0.900 43 H 0.138 0.862 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 24.542 4.969 0.241 25.041 hybrid contribution -0.398 -0.250 0.230 0.523 sum 24.143 4.720 0.471 24.605 Atomic orbital electron populations 1.69726 1.09102 1.31345 1.37623 1.26755 0.95254 1.04025 0.90375 0.85500 0.79558 0.76812 0.79276 1.18721 1.20431 1.17904 1.19493 0.94744 0.95524 1.41877 0.92566 1.17863 0.92570 0.92206 0.90089 1.21094 0.96762 1.04751 1.04409 1.20720 0.92382 0.96825 0.98083 1.19319 0.95098 1.00336 1.04416 1.20746 0.88804 0.94591 0.96201 1.61911 1.03361 1.55377 1.05195 1.22177 1.00671 0.97111 0.87601 1.21472 0.93760 0.99791 0.99499 1.22110 0.96779 1.03435 0.94567 1.23188 0.80337 0.83814 0.94136 1.22257 0.87652 0.96806 1.00384 1.89416 1.32190 1.19644 1.88110 1.24639 0.82434 0.96695 1.03390 1.24422 0.98956 0.81602 1.00804 1.88839 1.20628 1.35896 1.86211 1.20776 0.94414 0.97393 0.95983 1.21165 0.94033 1.03684 1.05033 0.89664 0.88997 0.86691 0.93882 0.90220 0.91347 0.94594 0.89863 0.92131 0.90105 0.90249 0.92854 0.89981 0.89996 0.85720 0.85833 0.89984 0.86175 0.88092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -47.79 13.93 21.83 0.30 -47.49 16 2 C 0.05 2.76 5.40 85.26 0.46 3.22 16 3 Si 0.96 44.57 24.52 68.60 1.68 46.25 16 4 H -0.26 -11.56 6.71 99.48 0.67 -10.89 16 5 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 6 H -0.26 -12.15 6.86 99.48 0.68 -11.47 16 7 C -0.49 -27.89 9.57 23.46 0.22 -27.66 16 8 H 0.06 3.45 8.06 -2.91 -0.02 3.43 16 9 C 0.08 3.90 5.11 -21.29 -0.11 3.79 16 10 C -0.25 -12.15 7.18 22.73 0.16 -11.99 16 11 C -0.06 -2.58 9.67 22.22 0.21 -2.36 16 12 C -0.19 -7.16 4.15 -19.67 -0.08 -7.25 16 13 C 0.12 3.72 5.42 85.56 0.46 4.19 16 14 N -0.53 -15.76 4.69 -901.02 -4.23 -19.99 16 15 C 0.05 1.53 4.57 86.33 0.39 1.93 16 16 C -0.11 -2.74 5.94 30.66 0.18 -2.55 16 17 C -0.13 -2.86 5.35 30.66 0.16 -2.70 16 18 C 0.26 6.16 1.05 30.60 0.03 6.19 16 19 C 0.06 1.44 4.79 86.30 0.41 1.86 16 20 O -0.37 -9.31 10.34 -126.22 -1.30 -10.62 16 21 C 0.00 0.07 7.91 72.64 0.57 0.64 16 22 C 0.02 0.25 8.08 72.64 0.59 0.83 16 23 O -0.39 -8.37 10.87 -126.22 -1.37 -9.74 16 24 C -0.07 -2.60 7.75 22.22 0.17 -2.43 16 25 C -0.22 -10.11 9.80 22.73 0.22 -9.89 16 26 H 0.29 14.79 8.30 -92.71 -0.77 14.02 16 27 H 0.09 4.52 4.73 -2.91 -0.01 4.51 16 28 H 0.12 4.32 8.06 -2.91 -0.02 4.30 16 29 H 0.04 1.18 8.02 -2.39 -0.02 1.17 16 30 H 0.08 2.29 8.08 -2.39 -0.02 2.27 16 31 H 0.07 2.44 5.63 -2.39 -0.01 2.43 16 32 H 0.04 0.98 8.14 -2.38 -0.02 0.96 16 33 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.06 1.76 7.81 -2.39 -0.02 1.74 16 35 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.08 2.01 8.13 -2.39 -0.02 1.99 16 39 H 0.08 1.06 8.14 -2.39 -0.02 1.05 16 40 H 0.12 1.38 8.14 -2.38 -0.02 1.36 16 41 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.12 3.93 8.06 -2.91 -0.02 3.91 16 44 H 0.10 4.50 8.06 -2.91 -0.02 4.47 16 Total: -1.00 -63.66 342.95 0.08 -63.59 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: 0.92 Total: 22.19 kcal Atomic # 6 Polarization: -48.26 SS G_CDS: 4.08 Total: -44.18 kcal Atomic # 7 Polarization: -63.56 SS G_CDS: -3.92 Total: -67.48 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: -2.68 Total: -20.36 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 1.68 Total: 46.25 kcal Total: -63.66 0.08 -63.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399039851.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.629 kcal (2) G-P(sol) polarization free energy of solvation -63.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds