Wall clock time and date at job start Tue Mar 31 2020 08:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30854 * 1 3 3 Si 1.86798 * 120.00212 * 2 1 4 4 H 1.48494 * 109.47181 * 272.50003 * 3 2 1 5 5 H 1.48504 * 109.47000 * 32.49997 * 3 2 1 6 6 H 1.48501 * 109.47110 * 152.50226 * 3 2 1 7 7 C 1.39959 * 119.99592 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99977 * 347.52891 * 7 2 1 9 9 C 1.41071 * 119.99864 * 167.53554 * 7 2 1 10 10 C 1.40738 * 120.29909 * 328.81378 * 9 7 2 11 11 C 1.36465 * 119.93898 * 180.27617 * 10 9 7 12 12 C 1.38862 * 120.57831 * 359.70441 * 11 10 9 13 13 C 1.38218 * 120.61928 * 0.02562 * 12 11 10 14 14 C 1.38646 * 120.03026 * 359.97438 * 13 12 11 15 15 N 1.39125 * 120.28272 * 180.02562 * 14 13 12 16 16 C 1.34775 * 120.00154 * 34.21682 * 15 14 13 17 17 O 1.21284 * 119.99960 * 355.26769 * 16 15 14 18 18 C 1.50703 * 120.00026 * 174.98642 * 16 15 14 19 19 O 1.42905 * 109.46996 * 180.27650 * 18 16 15 20 20 C 1.42899 * 113.99893 * 180.02562 * 19 18 16 21 21 C 1.52996 * 109.47296 * 180.02562 * 20 19 18 22 22 C 1.54265 * 110.02933 * 292.90800 * 21 20 19 23 23 C 1.54965 * 104.15661 * 217.13429 * 22 21 20 24 24 C 1.54887 * 102.77813 * 37.88775 * 23 22 21 25 25 C 1.53865 * 110.03633 * 175.68669 * 21 20 19 26 26 H 0.97006 * 119.99449 * 359.97438 * 1 2 3 27 27 H 1.07989 * 120.03085 * 0.02562 * 10 9 7 28 28 H 1.08001 * 119.70964 * 179.72394 * 11 10 9 29 29 H 1.08004 * 119.68877 * 180.02562 * 12 11 10 30 30 H 1.07995 * 119.98893 * 180.02562 * 13 12 11 31 31 H 0.97007 * 120.00312 * 214.21951 * 15 14 13 32 32 H 1.08994 * 109.47481 * 300.27900 * 18 16 15 33 33 H 1.08996 * 109.46922 * 60.27942 * 18 16 15 34 34 H 1.09009 * 109.46856 * 299.99894 * 20 19 18 35 35 H 1.08996 * 109.47385 * 59.99621 * 20 19 18 36 36 H 1.09006 * 110.01813 * 54.29308 * 21 20 19 37 37 H 1.08997 * 110.49027 * 335.77617 * 22 21 20 38 38 H 1.08996 * 110.48860 * 98.42715 * 22 21 20 39 39 H 1.09006 * 110.71922 * 279.56908 * 23 22 21 40 40 H 1.09002 * 110.92704 * 156.29739 * 23 22 21 41 41 H 1.09007 * 110.48719 * 203.40258 * 24 23 22 42 42 H 1.08996 * 110.60265 * 80.81929 * 24 23 22 43 43 H 1.08999 * 110.03768 * 238.57012 * 25 21 20 44 44 H 1.09002 * 110.03459 * 359.94906 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 2.4372 2.0769 -1.3987 5 1 1.4675 2.6368 0.7523 6 1 3.5656 1.4254 0.6464 7 6 2.0082 -1.2121 -0.0005 8 1 1.4873 -2.1365 0.2010 9 6 3.3940 -1.2265 -0.2642 10 6 3.9633 -0.2678 -1.1231 11 6 5.3039 -0.2920 -1.3775 12 6 6.1170 -1.2526 -0.7908 13 6 5.5836 -2.2018 0.0607 14 6 4.2250 -2.2008 0.3369 15 7 3.6826 -3.1534 1.1937 16 6 4.3994 -3.6018 2.2432 17 8 5.5474 -3.2403 2.3923 18 6 3.7724 -4.5476 3.2349 19 8 4.7232 -4.8710 4.2515 20 6 4.2270 -5.7674 5.2476 21 6 5.3233 -6.0413 6.2790 22 6 6.4748 -6.8350 5.6280 23 6 6.9376 -7.8114 6.7389 24 6 5.6047 -8.2166 7.4158 25 6 4.7705 -6.9190 7.4155 26 1 -0.4849 0.8401 0.0004 27 1 3.3393 0.4836 -1.5836 28 1 5.7361 0.4427 -2.0407 29 1 7.1762 -1.2582 -1.0019 30 1 6.2255 -2.9440 0.5117 31 1 2.7884 -3.4948 1.0357 32 1 2.9022 -4.0736 3.6889 33 1 3.4639 -5.4590 2.7229 34 1 3.3659 -5.3190 5.7434 35 1 3.9281 -6.7041 4.7770 36 1 5.6993 -5.1011 6.6825 37 1 6.1145 -7.3877 4.7605 38 1 7.2871 -6.1657 5.3448 39 1 7.5931 -7.3059 7.4481 40 1 7.4334 -8.6822 6.3100 41 1 5.7827 -8.5555 8.4365 42 1 5.1023 -8.9933 6.8393 43 1 4.8788 -6.4052 8.3706 44 1 3.7208 -7.1491 7.2327 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000410826049.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:21:53 Heat of formation + Delta-G solvation = -76.342574 kcal Electronic energy + Delta-G solvation = -24075.974152 eV Core-core repulsion = 20571.281588 eV Total energy + Delta-G solvation = -3504.692564 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.76009 -38.85825 -37.61665 -36.62597 -33.89507 -33.62467 -30.80793 -30.46248 -29.27311 -28.84260 -27.09559 -25.02959 -24.31011 -22.14513 -20.89832 -20.75534 -19.94708 -19.50116 -17.48297 -17.14755 -17.07287 -16.29978 -16.02132 -15.58998 -15.23741 -15.03464 -14.45281 -14.15573 -13.93566 -13.55269 -13.48140 -13.21758 -13.11069 -12.47500 -12.30399 -12.09767 -11.87084 -11.65631 -11.46117 -11.33035 -11.19692 -11.08831 -10.90465 -10.89477 -10.78260 -10.58537 -10.43738 -10.03071 -9.85254 -9.65599 -9.39215 -9.32652 -8.83092 -7.65332 -7.15551 -6.98786 -4.52548 2.39813 2.64807 3.06995 3.10928 3.16582 3.31679 3.35207 3.95525 4.18454 4.42011 4.42869 4.51376 4.65497 5.01966 5.07187 5.20495 5.24637 5.25874 5.27355 5.31245 5.40156 5.42796 5.45972 5.54881 5.60269 5.68399 5.82919 5.89518 6.06328 6.08454 6.14172 6.14322 6.25676 6.33995 6.61676 6.71639 6.96344 7.07142 7.15020 7.37508 7.47408 7.69477 7.80086 7.94685 8.22239 8.24113 8.55491 8.69799 8.88598 10.03313 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.022070 B = 0.002980 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.379513 B = 9394.992052 C =10234.435775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.085 3.915 3 Si 0.913 3.087 4 H -0.270 1.270 5 H -0.293 1.293 6 H -0.243 1.243 7 C -0.450 4.450 8 H 0.088 0.912 9 C 0.084 3.916 10 C -0.226 4.226 11 C -0.087 4.087 12 C -0.226 4.226 13 C -0.077 4.077 14 C 0.033 3.967 15 N -0.639 5.639 16 C 0.502 3.498 17 O -0.519 6.519 18 C 0.047 3.953 19 O -0.360 6.360 20 C 0.066 3.934 21 C -0.091 4.091 22 C -0.114 4.114 23 C -0.128 4.128 24 C -0.125 4.125 25 C -0.118 4.118 26 H 0.285 0.715 27 H 0.104 0.896 28 H 0.094 0.906 29 H 0.097 0.903 30 H 0.117 0.883 31 H 0.405 0.595 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.049 0.951 35 H 0.049 0.951 36 H 0.081 0.919 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.067 0.933 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.687 -12.306 10.667 16.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.133 4.133 3 Si 0.740 3.260 4 H -0.197 1.197 5 H -0.221 1.221 6 H -0.166 1.166 7 C -0.479 4.479 8 H 0.106 0.894 9 C 0.080 3.920 10 C -0.246 4.246 11 C -0.106 4.106 12 C -0.246 4.246 13 C -0.098 4.098 14 C -0.060 4.060 15 N -0.283 5.283 16 C 0.288 3.712 17 O -0.395 6.395 18 C -0.033 4.033 19 O -0.278 6.278 20 C -0.010 4.010 21 C -0.110 4.110 22 C -0.151 4.151 23 C -0.165 4.165 24 C -0.162 4.162 25 C -0.156 4.156 26 H 0.096 0.904 27 H 0.121 0.879 28 H 0.113 0.887 29 H 0.115 0.885 30 H 0.135 0.865 31 H 0.240 0.760 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.100 0.900 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.392 -11.905 10.849 16.985 hybrid contribution -0.720 0.599 -0.146 0.948 sum 4.672 -11.306 10.703 16.255 Atomic orbital electron populations 1.69651 1.07889 1.30241 1.36135 1.26067 0.94793 1.01567 0.90911 0.86306 0.81095 0.79635 0.78969 1.19664 1.22107 1.16598 1.19174 0.91086 0.95465 1.42191 0.89387 1.17553 0.93311 0.90101 0.91012 1.20636 0.95159 1.04053 1.04713 1.20387 0.93900 0.97607 0.98681 1.20347 0.98083 1.00485 1.05656 1.20828 0.93790 0.98660 0.96483 1.17553 0.92336 0.96785 0.99372 1.42725 1.19117 1.40655 1.25776 1.20139 0.87048 0.82397 0.81646 1.90668 1.17120 1.57342 1.74368 1.22176 0.92510 0.98421 0.90217 1.88013 1.37481 1.65586 1.36707 1.22720 0.96363 0.92593 0.89368 1.21750 0.95293 0.99604 0.94327 1.22373 0.97789 0.97449 0.97527 1.22548 0.96964 0.99071 0.97945 1.22357 0.96125 0.97224 1.00507 1.22134 0.99628 0.95760 0.98052 0.90435 0.87864 0.88746 0.88475 0.86530 0.75962 0.90245 0.90687 0.93288 0.93236 0.90030 0.91516 0.91132 0.91591 0.91696 0.91812 0.91687 0.91441 0.91626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.98 13.93 55.55 0.77 -20.21 16 2 C 0.08 2.16 5.47 -17.32 -0.09 2.06 16 3 Si 0.91 20.82 24.40 -169.99 -4.15 16.67 16 4 H -0.27 -5.95 6.66 56.52 0.38 -5.57 16 5 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.24 -5.82 6.69 56.52 0.38 -5.44 16 7 C -0.45 -11.45 9.13 -37.86 -0.35 -11.80 16 8 H 0.09 2.23 7.08 -52.49 -0.37 1.86 16 9 C 0.08 2.09 5.14 -106.65 -0.55 1.54 16 10 C -0.23 -5.42 6.95 -39.28 -0.27 -5.69 16 11 C -0.09 -1.92 9.97 -39.99 -0.40 -2.32 16 12 C -0.23 -4.95 10.04 -39.36 -0.39 -5.35 16 13 C -0.08 -1.78 8.70 -39.44 -0.34 -2.13 16 14 C 0.03 0.77 6.35 -83.17 -0.53 0.24 16 15 N -0.64 -12.70 5.03 -9.47 -0.05 -12.75 16 16 C 0.50 9.67 7.75 -10.98 -0.09 9.58 16 17 O -0.52 -12.00 13.87 -14.36 -0.20 -12.20 16 18 C 0.05 0.67 6.42 36.01 0.23 0.90 16 19 O -0.36 -5.50 9.71 -55.14 -0.54 -6.04 16 20 C 0.07 0.74 4.98 37.16 0.19 0.92 16 21 C -0.09 -0.93 3.19 -89.51 -0.29 -1.22 16 22 C -0.11 -1.17 6.22 -25.03 -0.16 -1.33 16 23 C -0.13 -1.05 6.91 -24.70 -0.17 -1.22 16 24 C -0.12 -0.92 6.83 -25.07 -0.17 -1.09 16 25 C -0.12 -0.94 6.46 -25.62 -0.17 -1.10 16 26 H 0.29 6.74 8.30 -40.82 -0.34 6.40 16 27 H 0.10 2.44 4.41 -52.49 -0.23 2.21 16 28 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 29 H 0.10 1.88 8.06 -52.48 -0.42 1.46 16 30 H 0.12 2.68 6.15 -52.49 -0.32 2.35 16 31 H 0.41 7.07 7.58 -40.82 -0.31 6.76 16 32 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.05 0.49 8.14 -51.92 -0.42 0.07 16 35 H 0.05 0.48 8.02 -51.93 -0.42 0.06 16 36 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.07 0.71 7.77 -51.93 -0.40 0.30 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.06 0.48 7.67 -51.93 -0.40 0.08 16 LS Contribution 352.42 15.07 5.31 5.31 Total: -1.00 -30.11 352.42 -9.10 -39.21 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -6.71 Total: 7.98 kcal Atomic # 6 Polarization: -14.44 SS G_CDS: -3.54 Total: -17.98 kcal Atomic # 7 Polarization: -33.68 SS G_CDS: 0.73 Total: -32.95 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: -0.73 Total: -18.24 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.15 Total: 16.67 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.11 -9.10 -39.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000410826049.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.130 kcal (2) G-P(sol) polarization free energy of solvation -30.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds