Wall clock time and date at job start Tue Mar 31 2020 08:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86794 * 120.00151 * 2 1 4 4 H 1.48501 * 109.47349 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47182 * 300.00088 * 3 2 1 6 6 H 1.48500 * 109.47316 * 60.00150 * 3 2 1 7 7 C 1.37885 * 120.00021 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00177 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99570 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46749 * 179.97438 * 9 7 2 11 11 N 1.46505 * 109.47248 * 179.97438 * 10 9 7 12 12 C 1.34776 * 120.00085 * 179.97438 * 11 10 9 13 13 O 1.21284 * 120.00018 * 359.97438 * 12 11 10 14 14 C 1.50696 * 120.00080 * 179.72240 * 12 11 10 15 15 H 1.09007 * 109.52093 * 65.49991 * 14 12 11 16 16 C 1.53094 * 109.52416 * 305.31567 * 14 12 11 17 17 O 1.42910 * 109.41071 * 297.69900 * 16 14 12 18 18 C 1.42904 * 114.09658 * 298.84128 * 17 16 14 19 19 C 1.53098 * 109.41381 * 61.15915 * 18 17 16 20 20 C 1.53171 * 109.52598 * 185.62218 * 14 12 11 21 21 H 1.09000 * 109.54884 * 182.79073 * 20 14 12 22 22 C 1.50703 * 109.54710 * 303.06191 * 20 14 12 23 23 C 1.38227 * 119.99673 * 316.72653 * 22 20 14 24 24 C 1.38234 * 119.99926 * 179.81079 * 23 22 20 25 25 C 1.38235 * 120.00032 * 0.41062 * 24 23 22 26 26 C 1.38237 * 119.99540 * 359.81791 * 25 24 23 27 27 C 1.38232 * 120.00376 * 359.97438 * 26 25 24 28 28 H 0.97000 * 119.99582 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47367 * 59.99861 * 9 7 2 30 30 H 1.09002 * 109.47289 * 299.99118 * 9 7 2 31 31 H 1.09006 * 109.47653 * 59.99695 * 10 9 7 32 32 H 1.09003 * 109.47202 * 299.99568 * 10 9 7 33 33 H 0.97000 * 119.99515 * 359.97438 * 11 10 9 34 34 H 1.08994 * 109.48440 * 57.67752 * 16 14 12 35 35 H 1.08997 * 109.48207 * 177.72311 * 16 14 12 36 36 H 1.08997 * 109.48042 * 301.17484 * 18 17 16 37 37 H 1.08996 * 109.48768 * 181.14318 * 18 17 16 38 38 H 1.09003 * 109.51856 * 182.48520 * 19 18 17 39 39 H 1.09001 * 109.57010 * 62.32850 * 19 18 17 40 40 H 1.08009 * 120.00481 * 359.97438 * 23 22 20 41 41 H 1.08004 * 120.00528 * 180.20654 * 24 23 22 42 42 H 1.07999 * 120.00144 * 179.78980 * 25 24 23 43 43 H 1.08000 * 119.99306 * 179.97438 * 26 25 24 44 44 H 1.07997 * 120.00064 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5127 -4.9309 0.0012 12 6 2.1866 -6.0981 0.0007 13 8 3.3995 -6.0981 -0.0006 14 6 1.4332 -7.4031 0.0077 15 1 0.8775 -7.5079 -0.9242 16 6 0.4608 -7.4262 1.1899 17 8 1.1971 -7.3463 2.4121 18 6 2.1037 -8.4313 2.6192 19 6 3.1421 -8.4485 1.4942 20 6 2.4221 -8.5645 0.1472 21 1 1.8824 -9.5104 0.1025 22 6 3.4312 -8.5044 -0.9706 23 6 3.0175 -8.2334 -2.2613 24 6 3.9435 -8.1744 -3.2859 25 6 5.2822 -8.3949 -3.0212 26 6 5.6953 -8.6707 -1.7311 27 6 4.7698 -8.7254 -0.7058 28 1 -0.4849 0.8401 0.0004 29 1 0.6247 -2.5571 -0.8896 30 1 0.6241 -2.5568 0.8904 31 1 2.8720 -3.6044 0.8905 32 1 2.8719 -3.6044 -0.8895 33 1 0.5427 -4.9308 0.0019 34 1 -0.2185 -6.5769 1.1186 35 1 -0.1125 -8.3531 1.1710 36 1 1.5519 -9.3712 2.6189 37 1 2.6080 -8.3060 3.5773 38 1 3.8078 -9.3015 1.6261 39 1 3.7225 -7.5262 1.5189 40 1 1.9710 -8.0650 -2.4689 41 1 3.6208 -7.9593 -4.2939 42 1 6.0053 -8.3522 -3.8222 43 1 6.7412 -8.8434 -1.5244 44 1 5.0925 -8.9412 0.3020 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000415421751.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:05:17 Heat of formation + Delta-G solvation = -68.825252 kcal Electronic energy + Delta-G solvation = -25243.590385 eV Core-core repulsion = 21739.223797 eV Total energy + Delta-G solvation = -3504.366588 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.89501 -38.68894 -37.99037 -35.03028 -34.13270 -32.91433 -31.82114 -30.66008 -30.03453 -29.24957 -25.35320 -24.99827 -24.16764 -22.45571 -21.69118 -21.15526 -20.56522 -19.23725 -17.32639 -16.85506 -16.29994 -16.05033 -15.81023 -15.45585 -15.14996 -14.81011 -14.58713 -14.38471 -14.26804 -13.95029 -13.46727 -13.16865 -13.10126 -12.96501 -12.45778 -12.28145 -12.19986 -11.98817 -11.42433 -11.33206 -11.15275 -11.04785 -10.92761 -10.60997 -10.59762 -10.45189 -10.25136 -9.85727 -9.60863 -9.34801 -9.08582 -8.77041 -8.48930 -8.40610 -8.25134 -6.07148 -4.09433 1.51086 1.55589 3.08606 3.29768 3.37188 3.42378 3.68819 3.85614 3.90490 4.42552 4.44108 4.56524 4.75133 4.80056 5.01365 5.06124 5.09472 5.11904 5.20303 5.30058 5.30344 5.35785 5.42923 5.48483 5.53550 5.63869 5.69698 5.81139 5.89557 6.12557 6.14253 6.33729 6.41455 6.42723 6.58869 6.62607 6.72607 6.80210 7.02044 7.08700 7.13830 7.55819 7.66126 7.91762 8.11103 8.31836 8.77340 8.96959 9.55224 11.04564 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.015086 B = 0.003793 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.611132 B = 7381.189063 C = 8503.588160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.519 4.519 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.126 3.874 11 N -0.721 5.721 12 C 0.519 3.481 13 O -0.532 6.532 14 C -0.144 4.144 15 H 0.105 0.895 16 C 0.069 3.931 17 O -0.373 6.373 18 C 0.060 3.940 19 C -0.161 4.161 20 C -0.029 4.029 21 H 0.085 0.915 22 C -0.043 4.043 23 C -0.124 4.124 24 C -0.116 4.116 25 C -0.132 4.132 26 C -0.118 4.118 27 C -0.106 4.106 28 H 0.261 0.739 29 H 0.021 0.979 30 H 0.022 0.978 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.393 0.607 34 H 0.101 0.899 35 H 0.060 0.940 36 H 0.048 0.952 37 H 0.094 0.906 38 H 0.073 0.927 39 H 0.100 0.900 40 H 0.114 0.886 41 H 0.116 0.884 42 H 0.115 0.885 43 H 0.116 0.884 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.792 -22.381 -0.935 22.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.558 4.558 8 H 0.077 0.923 9 C -0.025 4.025 10 C 0.004 3.996 11 N -0.371 5.371 12 C 0.304 3.696 13 O -0.409 6.409 14 C -0.166 4.166 15 H 0.123 0.877 16 C -0.008 4.008 17 O -0.291 6.291 18 C -0.017 4.017 19 C -0.198 4.198 20 C -0.047 4.047 21 H 0.103 0.897 22 C -0.043 4.043 23 C -0.142 4.142 24 C -0.134 4.134 25 C -0.150 4.150 26 C -0.136 4.136 27 C -0.124 4.124 28 H 0.071 0.929 29 H 0.039 0.961 30 H 0.041 0.959 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.227 0.773 34 H 0.119 0.881 35 H 0.078 0.922 36 H 0.066 0.934 37 H 0.112 0.888 38 H 0.092 0.908 39 H 0.118 0.882 40 H 0.132 0.868 41 H 0.134 0.866 42 H 0.133 0.867 43 H 0.134 0.866 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 3.512 -22.078 -0.798 22.370 hybrid contribution -0.081 0.883 -0.348 0.953 sum 3.431 -21.195 -1.146 21.501 Atomic orbital electron populations 1.69969 1.06072 1.26691 1.50619 1.24992 0.94879 0.99367 0.95042 0.86475 0.80192 0.83416 0.77599 1.19606 1.20956 1.20927 1.21096 0.93249 0.90430 1.51018 0.92284 1.19319 0.94229 0.91205 0.97731 1.21648 0.95915 0.81566 1.00516 1.46262 1.10212 1.06558 1.74074 1.20021 0.88175 0.84891 0.76532 1.90649 1.13597 1.87140 1.49559 1.22175 0.98363 0.94636 1.01439 0.87686 1.22573 0.92464 1.02758 0.83033 1.88032 1.55770 1.46819 1.38472 1.22635 0.90712 0.89528 0.98840 1.22509 0.99026 1.04839 0.93442 1.19914 0.94294 0.96695 0.93842 0.89669 1.19498 0.94148 0.97259 0.93376 1.20885 0.99290 1.01337 0.92702 1.21022 0.93448 1.00107 0.98844 1.21035 0.95855 1.01279 0.96790 1.21063 0.99126 1.00247 0.93143 1.20938 0.92515 1.00070 0.98827 0.92948 0.96095 0.95932 0.92741 0.92863 0.77321 0.88131 0.92179 0.93410 0.88824 0.90838 0.88171 0.86801 0.86562 0.86679 0.86605 0.86255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.37 13.29 55.43 0.74 -25.63 16 2 C 0.06 1.67 5.46 -17.81 -0.10 1.57 16 3 Si 0.90 21.65 29.54 -169.99 -5.02 16.62 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.52 -14.64 9.11 -34.44 -0.31 -14.95 16 8 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 9 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 10 C 0.13 2.75 5.61 -4.04 -0.02 2.73 16 11 N -0.72 -12.77 5.41 -60.29 -0.33 -13.10 16 12 C 0.52 8.63 6.12 -10.99 -0.07 8.56 16 13 O -0.53 -10.48 12.46 5.55 0.07 -10.41 16 14 C -0.14 -1.72 2.21 -91.64 -0.20 -1.92 16 15 H 0.11 1.04 6.83 -51.93 -0.35 0.69 16 16 C 0.07 0.75 6.14 37.21 0.23 0.97 16 17 O -0.37 -4.97 10.45 -35.23 -0.37 -5.34 16 18 C 0.06 0.63 6.84 37.21 0.25 0.88 16 19 C -0.16 -1.83 3.91 -26.59 -0.10 -1.94 16 20 C -0.03 -0.33 2.38 -91.59 -0.22 -0.54 16 21 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 22 C -0.04 -0.55 3.46 -104.63 -0.36 -0.91 16 23 C -0.12 -1.59 8.94 -39.59 -0.35 -1.95 16 24 C -0.12 -1.46 10.05 -39.58 -0.40 -1.85 16 25 C -0.13 -1.61 10.05 -39.58 -0.40 -2.01 16 26 C -0.12 -1.46 10.05 -39.58 -0.40 -1.86 16 27 C -0.11 -1.36 8.88 -39.59 -0.35 -1.72 16 28 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 29 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 1.26 8.14 -51.93 -0.42 0.83 16 32 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.39 6.08 7.55 -40.82 -0.31 5.77 16 34 H 0.10 1.04 7.22 -51.93 -0.38 0.67 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.07 0.68 7.00 -51.93 -0.36 0.32 16 39 H 0.10 1.51 5.95 -51.93 -0.31 1.20 16 40 H 0.11 1.27 6.73 -52.48 -0.35 0.92 16 41 H 0.12 1.23 8.06 -52.48 -0.42 0.80 16 42 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 43 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 44 H 0.12 1.38 6.05 -52.49 -0.32 1.06 16 LS Contribution 349.46 15.07 5.27 5.27 Total: -1.00 -33.13 349.46 -9.16 -42.29 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -6.57 Total: 5.06 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: -2.94 Total: -14.76 kcal Atomic # 7 Polarization: -39.14 SS G_CDS: 0.41 Total: -38.73 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: -0.30 Total: -15.75 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.13 -9.16 -42.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415421751.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.538 kcal (2) G-P(sol) polarization free energy of solvation -33.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds