Wall clock time and date at job start Tue Mar 31 2020 08:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86794 * 120.00151 * 2 1 4 4 H 1.48501 * 109.47349 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47182 * 300.00088 * 3 2 1 6 6 H 1.48500 * 109.47316 * 60.00150 * 3 2 1 7 7 C 1.37885 * 120.00021 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00177 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99570 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46749 * 179.97438 * 9 7 2 11 11 N 1.46505 * 109.47248 * 179.97438 * 10 9 7 12 12 C 1.34776 * 120.00085 * 179.97438 * 11 10 9 13 13 O 1.21284 * 120.00018 * 359.97438 * 12 11 10 14 14 C 1.50696 * 120.00080 * 179.72240 * 12 11 10 15 15 H 1.09007 * 109.52093 * 65.49991 * 14 12 11 16 16 C 1.53094 * 109.52416 * 305.31567 * 14 12 11 17 17 O 1.42910 * 109.41071 * 297.69900 * 16 14 12 18 18 C 1.42904 * 114.09658 * 298.84128 * 17 16 14 19 19 C 1.53098 * 109.41381 * 61.15915 * 18 17 16 20 20 C 1.53171 * 109.52598 * 185.62218 * 14 12 11 21 21 H 1.09000 * 109.54884 * 182.79073 * 20 14 12 22 22 C 1.50703 * 109.54710 * 303.06191 * 20 14 12 23 23 C 1.38227 * 119.99673 * 316.72653 * 22 20 14 24 24 C 1.38234 * 119.99926 * 179.81079 * 23 22 20 25 25 C 1.38235 * 120.00032 * 0.41062 * 24 23 22 26 26 C 1.38237 * 119.99540 * 359.81791 * 25 24 23 27 27 C 1.38232 * 120.00376 * 359.97438 * 26 25 24 28 28 H 0.97000 * 119.99582 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47367 * 59.99861 * 9 7 2 30 30 H 1.09002 * 109.47289 * 299.99118 * 9 7 2 31 31 H 1.09006 * 109.47653 * 59.99695 * 10 9 7 32 32 H 1.09003 * 109.47202 * 299.99568 * 10 9 7 33 33 H 0.97000 * 119.99515 * 359.97438 * 11 10 9 34 34 H 1.08994 * 109.48440 * 57.67752 * 16 14 12 35 35 H 1.08997 * 109.48207 * 177.72311 * 16 14 12 36 36 H 1.08997 * 109.48042 * 301.17484 * 18 17 16 37 37 H 1.08996 * 109.48768 * 181.14318 * 18 17 16 38 38 H 1.09003 * 109.51856 * 182.48520 * 19 18 17 39 39 H 1.09001 * 109.57010 * 62.32850 * 19 18 17 40 40 H 1.08009 * 120.00481 * 359.97438 * 23 22 20 41 41 H 1.08004 * 120.00528 * 180.20654 * 24 23 22 42 42 H 1.07999 * 120.00144 * 179.78980 * 25 24 23 43 43 H 1.08000 * 119.99306 * 179.97438 * 26 25 24 44 44 H 1.07997 * 120.00064 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5127 -4.9309 0.0012 12 6 2.1866 -6.0981 0.0007 13 8 3.3995 -6.0981 -0.0006 14 6 1.4332 -7.4031 0.0077 15 1 0.8775 -7.5079 -0.9242 16 6 0.4608 -7.4262 1.1899 17 8 1.1971 -7.3463 2.4121 18 6 2.1037 -8.4313 2.6192 19 6 3.1421 -8.4485 1.4942 20 6 2.4221 -8.5645 0.1472 21 1 1.8824 -9.5104 0.1025 22 6 3.4312 -8.5044 -0.9706 23 6 3.0175 -8.2334 -2.2613 24 6 3.9435 -8.1744 -3.2859 25 6 5.2822 -8.3949 -3.0212 26 6 5.6953 -8.6707 -1.7311 27 6 4.7698 -8.7254 -0.7058 28 1 -0.4849 0.8401 0.0004 29 1 0.6247 -2.5571 -0.8896 30 1 0.6241 -2.5568 0.8904 31 1 2.8720 -3.6044 0.8905 32 1 2.8719 -3.6044 -0.8895 33 1 0.5427 -4.9308 0.0019 34 1 -0.2185 -6.5769 1.1186 35 1 -0.1125 -8.3531 1.1710 36 1 1.5519 -9.3712 2.6189 37 1 2.6080 -8.3060 3.5773 38 1 3.8078 -9.3015 1.6261 39 1 3.7225 -7.5262 1.5189 40 1 1.9710 -8.0650 -2.4689 41 1 3.6208 -7.9593 -4.2939 42 1 6.0053 -8.3522 -3.8222 43 1 6.7412 -8.8434 -1.5244 44 1 5.0925 -8.9412 0.3020 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000415421751.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:05:16 Heat of formation + Delta-G solvation = -89.656444 kcal Electronic energy + Delta-G solvation = -25244.493693 eV Core-core repulsion = 21739.223797 eV Total energy + Delta-G solvation = -3505.269896 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.93634 -39.72533 -39.10503 -36.61309 -35.24898 -34.79808 -32.94453 -31.71719 -31.07822 -30.77778 -26.97593 -25.98669 -25.33853 -23.65196 -22.77815 -22.58191 -21.80084 -20.45625 -18.57166 -18.21589 -17.85762 -17.01975 -16.77755 -16.60080 -16.51995 -16.30387 -15.92902 -15.57536 -15.54928 -15.02444 -14.60101 -14.42128 -14.25093 -14.17127 -13.99595 -13.48885 -13.21522 -13.11354 -13.03879 -12.88690 -12.53495 -12.34068 -12.19817 -12.18901 -11.82671 -11.66739 -11.49506 -11.40361 -11.29670 -10.78820 -10.61361 -10.34291 -9.88356 -9.71260 -9.36304 -8.25205 -6.35571 0.58108 0.61322 1.39368 1.40230 1.53458 1.80931 2.30512 2.47674 2.95471 3.01677 3.09298 3.55414 3.66311 3.75871 3.92873 4.11465 4.18015 4.19011 4.26538 4.37002 4.47173 4.47859 4.51790 4.53453 4.62730 4.65942 4.73269 4.79606 4.81911 4.85199 4.94701 5.07405 5.23136 5.24208 5.31025 5.43532 5.55063 5.58096 5.66251 5.69689 5.78940 5.79403 6.16368 6.23390 6.27860 6.73959 6.77744 7.33709 7.43209 8.86860 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.015086 B = 0.003793 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.611132 B = 7381.189063 C = 8503.588160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.009 3.991 3 Si 0.964 3.036 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.547 4.547 8 H 0.055 0.945 9 C 0.025 3.975 10 C 0.149 3.851 11 N -0.721 5.721 12 C 0.514 3.486 13 O -0.564 6.564 14 C -0.135 4.135 15 H 0.131 0.869 16 C 0.066 3.934 17 O -0.405 6.405 18 C 0.057 3.943 19 C -0.157 4.157 20 C -0.028 4.028 21 H 0.120 0.880 22 C -0.054 4.054 23 C -0.140 4.140 24 C -0.131 4.131 25 C -0.145 4.145 26 C -0.132 4.132 27 C -0.124 4.124 28 H 0.266 0.734 29 H 0.008 0.992 30 H 0.007 0.993 31 H 0.036 0.964 32 H 0.039 0.961 33 H 0.405 0.595 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.079 0.921 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.058 0.942 40 H 0.129 0.871 41 H 0.131 0.869 42 H 0.133 0.867 43 H 0.132 0.868 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.259 -23.606 -1.067 23.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.190 4.190 3 Si 0.788 3.212 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.201 1.201 7 C -0.585 4.585 8 H 0.073 0.927 9 C -0.013 4.013 10 C 0.024 3.976 11 N -0.373 5.373 12 C 0.302 3.698 13 O -0.443 6.443 14 C -0.156 4.156 15 H 0.149 0.851 16 C -0.011 4.011 17 O -0.324 6.324 18 C -0.019 4.019 19 C -0.194 4.194 20 C -0.046 4.046 21 H 0.137 0.863 22 C -0.054 4.054 23 C -0.158 4.158 24 C -0.149 4.149 25 C -0.163 4.163 26 C -0.149 4.149 27 C -0.142 4.142 28 H 0.075 0.925 29 H 0.027 0.973 30 H 0.025 0.975 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.241 0.759 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.098 0.902 37 H 0.113 0.887 38 H 0.111 0.889 39 H 0.076 0.924 40 H 0.146 0.854 41 H 0.149 0.851 42 H 0.151 0.849 43 H 0.150 0.850 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 2.962 -23.332 -0.930 23.538 hybrid contribution 0.115 1.234 -0.305 1.276 sum 3.078 -22.098 -1.235 22.346 Atomic orbital electron populations 1.70062 1.07476 1.27935 1.51006 1.25850 0.95798 1.02996 0.94353 0.85414 0.78878 0.78837 0.78028 1.19195 1.20012 1.20086 1.21480 0.93410 0.92087 1.51555 0.92711 1.19110 0.94177 0.91797 0.96184 1.21057 0.94838 0.82727 0.98931 1.46120 1.10728 1.05658 1.74748 1.20931 0.88090 0.85888 0.74903 1.90645 1.15376 1.87745 1.50570 1.22219 0.98438 0.91505 1.03426 0.85109 1.22768 0.92023 1.04815 0.81485 1.87993 1.56485 1.48371 1.39566 1.22780 0.90483 0.90182 0.98438 1.22420 0.99285 1.03472 0.94227 1.20023 0.93947 0.97685 0.92920 0.86262 1.19765 0.94590 0.96996 0.94016 1.21168 1.00217 1.01569 0.92870 1.21349 0.93749 1.00048 0.99763 1.21342 0.96393 1.01166 0.97365 1.21376 1.00081 1.00156 0.93331 1.21183 0.93027 1.00605 0.99362 0.92500 0.97321 0.97493 0.94517 0.94249 0.75930 0.88137 0.88314 0.90240 0.88732 0.88949 0.92370 0.85355 0.85065 0.84933 0.85046 0.85641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.83 13.29 21.45 0.28 -54.55 16 2 C 0.01 0.51 5.46 84.66 0.46 0.97 16 3 Si 0.96 44.39 29.54 68.60 2.03 46.42 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 5 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 6 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 7 C -0.55 -31.41 9.11 25.60 0.23 -31.18 16 8 H 0.05 3.11 7.74 -2.91 -0.02 3.09 16 9 C 0.02 1.29 5.09 29.85 0.15 1.44 16 10 C 0.15 6.70 5.61 86.38 0.48 7.18 16 11 N -0.72 -25.71 5.41 -463.04 -2.51 -28.21 16 12 C 0.51 16.93 6.12 87.66 0.54 17.47 16 13 O -0.56 -22.60 12.46 -3.04 -0.04 -22.64 16 14 C -0.13 -2.90 2.21 -11.45 -0.03 -2.93 16 15 H 0.13 2.17 6.83 -2.38 -0.02 2.15 16 16 C 0.07 1.24 6.14 72.01 0.44 1.68 16 17 O -0.41 -10.12 10.45 -148.98 -1.56 -11.67 16 18 C 0.06 1.08 6.84 72.01 0.49 1.58 16 19 C -0.16 -3.34 3.91 30.69 0.12 -3.22 16 20 C -0.03 -0.55 2.38 -11.42 -0.03 -0.58 16 21 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 22 C -0.05 -1.32 3.46 -19.87 -0.07 -1.39 16 23 C -0.14 -3.42 8.94 22.27 0.20 -3.22 16 24 C -0.13 -3.18 10.05 22.27 0.22 -2.95 16 25 C -0.14 -3.45 10.05 22.27 0.22 -3.23 16 26 C -0.13 -3.21 10.05 22.27 0.22 -2.99 16 27 C -0.12 -3.14 8.88 22.27 0.20 -2.95 16 28 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 29 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 32 H 0.04 1.86 8.14 -2.39 -0.02 1.85 16 33 H 0.41 12.42 7.55 -92.71 -0.70 11.72 16 34 H 0.10 1.86 7.22 -2.39 -0.02 1.85 16 35 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.09 1.56 7.00 -2.39 -0.02 1.54 16 39 H 0.06 1.77 5.95 -2.39 -0.01 1.75 16 40 H 0.13 2.60 6.73 -2.91 -0.02 2.58 16 41 H 0.13 2.63 8.06 -2.91 -0.02 2.60 16 42 H 0.13 2.54 8.06 -2.91 -0.02 2.52 16 43 H 0.13 2.62 8.06 -2.91 -0.02 2.59 16 44 H 0.13 2.86 6.05 -2.91 -0.02 2.85 16 Total: -1.00 -72.76 349.46 2.38 -70.38 By element: Atomic # 1 Polarization: 24.29 SS G_CDS: 0.30 Total: 24.59 kcal Atomic # 6 Polarization: -28.18 SS G_CDS: 3.87 Total: -24.31 kcal Atomic # 7 Polarization: -80.54 SS G_CDS: -2.22 Total: -82.76 kcal Atomic # 8 Polarization: -32.71 SS G_CDS: -1.60 Total: -34.31 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -72.76 2.38 -70.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415421751.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.278 kcal (2) G-P(sol) polarization free energy of solvation -72.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds