Wall clock time and date at job start Tue Mar 31 2020 08:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99731 * 2 1 4 4 H 1.48504 * 109.46836 * 239.99720 * 3 2 1 5 5 H 1.48495 * 109.47228 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46983 * 120.00028 * 3 2 1 7 7 C 1.37873 * 120.00023 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00063 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00538 * 359.97438 * 7 2 1 10 10 N 1.46492 * 109.47606 * 180.02562 * 9 7 2 11 11 C 1.34775 * 120.00194 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00001 * 359.97438 * 11 10 9 13 13 C 1.50702 * 120.00132 * 180.02562 * 11 10 9 14 14 H 1.09001 * 109.47350 * 54.99526 * 13 11 10 15 15 O 1.42903 * 109.47214 * 175.00008 * 13 11 10 16 16 C 1.42901 * 113.99947 * 209.99929 * 15 13 11 17 17 C 1.54267 * 110.02960 * 267.16582 * 16 15 13 18 18 C 1.54889 * 104.19337 * 217.10231 * 17 16 15 19 19 C 1.54896 * 102.74684 * 37.94411 * 18 17 16 20 20 C 1.53869 * 110.03398 * 149.99760 * 16 15 13 21 21 C 1.50706 * 109.46824 * 294.99950 * 13 11 10 22 22 C 1.38234 * 120.00196 * 100.00236 * 21 13 11 23 23 C 1.38235 * 119.99814 * 179.97438 * 22 21 13 24 24 C 1.38230 * 120.00326 * 359.97438 * 23 22 21 25 25 C 1.38243 * 120.00092 * 359.97438 * 24 23 22 26 26 C 1.38234 * 119.99618 * 359.97438 * 25 24 23 27 27 H 0.96993 * 120.00200 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.46344 * 59.99970 * 9 7 2 29 29 H 1.09003 * 109.47132 * 300.00697 * 9 7 2 30 30 H 0.97001 * 119.99728 * 0.02562 * 10 9 7 31 31 H 1.09001 * 110.01555 * 28.60657 * 16 15 13 32 32 H 1.08997 * 110.48944 * 335.78155 * 17 16 15 33 33 H 1.09005 * 110.48663 * 98.42515 * 17 16 15 34 34 H 1.08999 * 110.75752 * 279.62793 * 18 17 16 35 35 H 1.09004 * 110.91303 * 156.33087 * 18 17 16 36 36 H 1.09000 * 110.48470 * 203.37794 * 19 18 17 37 37 H 1.09004 * 110.59690 * 80.78896 * 19 18 17 38 38 H 1.08999 * 110.03477 * 238.57420 * 20 16 15 39 39 H 1.08998 * 110.03115 * 359.97438 * 20 16 15 40 40 H 1.08000 * 119.99516 * 0.24808 * 22 21 13 41 41 H 1.08000 * 119.99297 * 179.97438 * 23 22 21 42 42 H 1.08001 * 120.00350 * 179.97438 * 24 23 22 43 43 H 1.07999 * 120.00235 * 179.97438 * 25 24 23 44 44 H 1.08005 * 119.99804 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0017 10 7 2.2031 -3.6126 0.0027 11 6 1.7539 -4.8833 0.0033 12 8 0.5616 -5.1050 0.0035 13 6 2.7333 -6.0288 0.0049 14 1 3.4168 -5.9212 0.8471 15 8 2.0226 -7.2629 0.1227 16 6 2.7544 -8.2937 0.7892 17 6 3.5136 -9.1539 -0.2419 18 6 3.4228 -10.5930 0.3236 19 6 1.9901 -10.6399 0.9104 20 6 1.7857 -9.2384 1.5218 21 6 3.5170 -6.0213 -1.2823 22 6 4.7933 -5.4911 -1.3113 23 6 5.5124 -5.4848 -2.4919 24 6 4.9555 -6.0090 -3.6433 25 6 3.6795 -6.5402 -3.6141 26 6 2.9608 -6.5475 -2.4332 27 1 -0.4850 0.8400 -0.0004 28 1 0.6242 -2.5575 -0.8881 29 1 0.6247 -2.5563 0.8919 30 1 3.1568 -3.4353 0.0029 31 1 3.4556 -7.8543 1.4987 32 1 3.0301 -9.0961 -1.2171 33 1 4.5541 -8.8363 -0.3116 34 1 4.1659 -10.7483 1.1058 35 1 3.5396 -11.3311 -0.4700 36 1 1.9186 -11.4067 1.6817 37 1 1.2590 -10.8228 0.1229 38 1 2.0173 -9.2582 2.5868 39 1 0.7575 -8.9105 1.3694 40 1 5.2303 -5.0859 -0.4106 41 1 6.5094 -5.0701 -2.5146 42 1 5.5171 -6.0037 -4.5658 43 1 3.2442 -6.9494 -4.5137 44 1 1.9638 -6.9621 -2.4105 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427615308.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:23:12 Heat of formation + Delta-G solvation = -73.242517 kcal Electronic energy + Delta-G solvation = -24913.774331 eV Core-core repulsion = 21409.216196 eV Total energy + Delta-G solvation = -3504.558135 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.13447 -38.48219 -38.24091 -35.81932 -34.15068 -32.49424 -31.64234 -30.82938 -28.79827 -28.27674 -27.49582 -25.87581 -22.72225 -22.57270 -21.55742 -20.84041 -20.32504 -19.70415 -17.42912 -17.35645 -16.65921 -15.96017 -15.67184 -15.26580 -15.13091 -14.83281 -14.42501 -14.23148 -14.17859 -13.50447 -13.36345 -13.27585 -13.16128 -12.64754 -12.58555 -12.00176 -11.84457 -11.79096 -11.60838 -11.24785 -11.20601 -11.14798 -11.00332 -10.96093 -10.85095 -10.74712 -10.58589 -10.30863 -9.77310 -9.40762 -9.15496 -8.84249 -8.72519 -8.50811 -7.87708 -6.15510 -4.22555 1.33779 1.47719 3.25372 3.26089 3.30599 3.31916 3.40105 3.80831 4.29654 4.43595 4.48454 4.54381 4.74821 4.82792 4.92731 5.03649 5.12610 5.17188 5.20345 5.24485 5.34912 5.39005 5.48801 5.50711 5.54620 5.61091 5.66262 5.74598 5.79827 5.90031 5.97051 6.02602 6.10387 6.14352 6.20078 6.48084 6.56240 6.61193 7.03450 7.20735 7.34289 7.44484 7.52658 7.67806 7.97506 8.61027 8.78334 9.08242 9.43683 10.94705 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.016005 B = 0.003877 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.084451 B = 7220.665340 C = 8380.993194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.252 3.748 10 N -0.706 5.706 11 C 0.505 3.495 12 O -0.532 6.532 13 C 0.113 3.887 14 H 0.087 0.913 15 O -0.339 6.339 16 C 0.082 3.918 17 C -0.143 4.143 18 C -0.124 4.124 19 C -0.122 4.122 20 C -0.125 4.125 21 C -0.104 4.104 22 C -0.109 4.109 23 C -0.121 4.121 24 C -0.118 4.118 25 C -0.123 4.123 26 C -0.084 4.084 27 H 0.266 0.734 28 H 0.027 0.973 29 H 0.028 0.972 30 H 0.389 0.611 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.082 0.918 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.119 0.881 43 H 0.121 0.879 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.009 -18.763 -1.663 22.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.581 4.581 8 H 0.080 0.920 9 C 0.132 3.868 10 N -0.356 5.356 11 C 0.288 3.712 12 O -0.409 6.409 13 C 0.051 3.949 14 H 0.105 0.895 15 O -0.256 6.256 16 C 0.024 3.976 17 C -0.181 4.181 18 C -0.161 4.161 19 C -0.159 4.159 20 C -0.163 4.163 21 C -0.104 4.104 22 C -0.127 4.127 23 C -0.139 4.139 24 C -0.136 4.136 25 C -0.141 4.141 26 C -0.102 4.102 27 H 0.076 0.924 28 H 0.045 0.955 29 H 0.046 0.954 30 H 0.222 0.778 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.101 0.899 40 H 0.140 0.860 41 H 0.140 0.860 42 H 0.137 0.863 43 H 0.139 0.861 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 10.747 -18.794 -1.720 21.718 hybrid contribution 1.201 1.165 0.030 1.674 sum 11.948 -17.629 -1.690 21.363 Atomic orbital electron populations 1.69963 1.06100 1.27420 1.48777 1.24940 0.94904 0.99394 0.94695 0.86479 0.79431 0.82339 0.78692 1.20056 1.21056 1.20051 1.21167 0.93209 0.90388 1.53363 0.91962 1.19118 0.88205 0.81682 0.97814 1.46355 1.11169 1.05591 1.72452 1.19972 0.89033 0.83872 0.78343 1.90679 1.16245 1.84455 1.49535 1.20920 0.92667 0.86112 0.95190 0.89535 1.88118 1.40436 1.19028 1.78014 1.22958 0.93119 0.88474 0.93098 1.22903 1.00268 0.94909 0.99986 1.22440 0.97005 0.96615 1.00074 1.22325 0.96985 0.96484 1.00154 1.22232 1.01129 0.94009 0.98887 1.20080 0.94568 1.00340 0.95459 1.21001 0.93762 0.99367 0.98598 1.21048 0.99965 1.00072 0.92775 1.21148 0.95675 0.98618 0.98140 1.21144 0.94846 1.00286 0.97824 1.21010 0.99925 0.97555 0.91702 0.92376 0.95465 0.95431 0.77814 0.91938 0.90283 0.91679 0.91623 0.91539 0.91679 0.91362 0.91105 0.89891 0.85951 0.86035 0.86302 0.86145 0.85494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.26 13.29 55.43 0.74 -25.53 16 2 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 3 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.54 -14.85 9.28 -34.44 -0.32 -15.17 16 8 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 9 C 0.25 6.80 5.43 -5.20 -0.03 6.77 16 10 N -0.71 -15.33 5.50 -61.47 -0.34 -15.67 16 11 C 0.51 10.67 7.16 -10.99 -0.08 10.59 16 12 O -0.53 -13.61 16.51 -14.30 -0.24 -13.85 16 13 C 0.11 1.79 2.72 -29.03 -0.08 1.71 16 14 H 0.09 1.15 7.23 -51.93 -0.38 0.78 16 15 O -0.34 -5.40 8.42 -55.09 -0.46 -5.87 16 16 C 0.08 0.98 3.38 -25.62 -0.09 0.90 16 17 C -0.14 -1.49 6.12 -25.07 -0.15 -1.65 16 18 C -0.12 -1.06 6.91 -24.73 -0.17 -1.23 16 19 C -0.12 -1.10 6.83 -25.07 -0.17 -1.27 16 20 C -0.13 -1.37 6.61 -25.62 -0.17 -1.54 16 21 C -0.10 -1.49 4.46 -104.62 -0.47 -1.95 16 22 C -0.11 -1.35 9.67 -39.58 -0.38 -1.74 16 23 C -0.12 -1.37 10.05 -39.59 -0.40 -1.77 16 24 C -0.12 -1.33 10.05 -39.58 -0.40 -1.73 16 25 C -0.12 -1.52 10.05 -39.58 -0.40 -1.92 16 26 C -0.08 -1.21 9.02 -39.58 -0.36 -1.57 16 27 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.39 7.31 8.32 -40.82 -0.34 6.97 16 31 H 0.06 0.69 7.38 -51.93 -0.38 0.30 16 32 H 0.08 0.92 7.74 -51.93 -0.40 0.52 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.08 1.06 7.95 -51.93 -0.41 0.64 16 40 H 0.12 1.27 8.04 -52.49 -0.42 0.85 16 41 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 42 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 43 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 44 H 0.13 1.96 7.78 -52.48 -0.41 1.55 16 LS Contribution 367.42 15.07 5.54 5.54 Total: -1.00 -32.92 367.42 -10.47 -43.39 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -6.93 Total: 5.94 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: -3.75 Total: -9.86 kcal Atomic # 7 Polarization: -41.60 SS G_CDS: 0.40 Total: -41.20 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: -0.70 Total: -19.71 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.92 -10.47 -43.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427615308.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.855 kcal (2) G-P(sol) polarization free energy of solvation -32.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds