Wall clock time and date at job start Tue Mar 31 2020 08:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99920 * 2 1 4 4 H 1.48498 * 109.46938 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47028 * 299.99824 * 3 2 1 6 6 H 1.48491 * 109.47211 * 60.00132 * 3 2 1 7 7 C 1.37881 * 120.00259 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00126 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99635 * 359.97438 * 7 2 1 10 10 N 1.46494 * 109.46926 * 180.02562 * 9 7 2 11 11 C 1.34775 * 120.00091 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00102 * 0.02562 * 11 10 9 13 13 C 1.50704 * 119.99976 * 179.97438 * 11 10 9 14 14 H 1.08996 * 109.47515 * 305.00123 * 13 11 10 15 15 O 1.42905 * 109.46962 * 185.00346 * 13 11 10 16 16 C 1.42900 * 114.00080 * 149.99981 * 15 13 11 17 17 C 1.54891 * 110.75439 * 96.66994 * 16 15 13 18 18 C 1.54267 * 104.19324 * 156.25931 * 17 16 15 19 19 C 1.53876 * 106.59870 * 336.39035 * 18 17 16 20 20 C 1.54261 * 106.59990 * 0.02562 * 19 18 17 21 21 C 1.50697 * 109.46883 * 65.00684 * 13 11 10 22 22 C 1.38236 * 120.00054 * 84.72635 * 21 13 11 23 23 C 1.38235 * 119.99870 * 179.78356 * 22 21 13 24 24 C 1.38239 * 119.99752 * 0.44288 * 23 22 21 25 25 C 1.38232 * 120.00426 * 359.81220 * 24 23 22 26 26 C 1.38235 * 119.99697 * 264.99635 * 21 13 11 27 27 H 0.96995 * 119.99949 * 359.97438 * 1 2 3 28 28 H 1.08994 * 109.47387 * 59.99873 * 9 7 2 29 29 H 1.09006 * 109.46993 * 299.99903 * 9 7 2 30 30 H 0.97004 * 119.99947 * 359.97438 * 10 9 7 31 31 H 1.09001 * 110.66964 * 333.23718 * 16 15 13 32 32 H 1.09004 * 110.48613 * 37.58304 * 17 16 15 33 33 H 1.08994 * 110.48745 * 274.93722 * 17 16 15 34 34 H 1.08995 * 110.03032 * 217.10762 * 18 17 16 35 35 H 1.08998 * 110.03405 * 95.67701 * 18 17 16 36 36 H 1.08998 * 110.02768 * 119.28860 * 19 18 17 37 37 H 1.08999 * 110.02894 * 240.66545 * 19 18 17 38 38 H 1.09000 * 110.48928 * 142.28640 * 20 19 18 39 39 H 1.09001 * 110.48691 * 264.79667 * 20 19 18 40 40 H 1.07996 * 120.00254 * 359.97438 * 22 21 13 41 41 H 1.08003 * 120.00107 * 180.27237 * 23 22 21 42 42 H 1.08001 * 119.99485 * 179.82810 * 24 23 22 43 43 H 1.07995 * 120.00208 * 179.97438 * 25 24 23 44 44 H 1.07998 * 120.00376 * 359.97438 * 26 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 6 1.7538 -4.8833 0.0000 12 8 0.5615 -5.1050 0.0000 13 6 2.7332 -6.0288 -0.0006 14 1 3.4167 -5.9220 -0.8429 15 8 2.0225 -7.2630 -0.1174 16 6 2.7542 -8.2944 -0.7830 17 6 3.4459 -9.2261 0.2429 18 6 3.6446 -10.5505 -0.5229 19 6 2.5945 -10.5698 -1.6475 20 6 1.7948 -9.2563 -1.5263 21 6 3.5168 -6.0202 1.2866 22 6 2.9998 -6.6294 2.4146 23 6 3.7207 -6.6255 3.5941 24 6 4.9545 -6.0043 3.6480 25 6 5.4691 -5.3905 2.5214 26 6 4.7502 -5.3983 1.3407 27 1 -0.4850 0.8400 0.0004 28 1 0.6240 -2.5567 -0.8902 29 1 0.6247 -2.5571 0.8897 30 1 3.1567 -3.4354 -0.0009 31 1 3.4820 -7.8662 -1.4723 32 1 2.8052 -9.3800 1.1112 33 1 4.4078 -8.8127 0.5458 34 1 3.4897 -11.3961 0.1472 35 1 4.6476 -10.5892 -0.9479 36 1 3.0880 -10.6180 -2.6182 37 1 1.9306 -11.4253 -1.5236 38 1 1.5516 -8.8651 -2.5142 39 1 0.8861 -9.4151 -0.9456 40 1 2.0341 -7.1112 2.3736 41 1 3.3187 -7.1053 4.4743 42 1 5.5164 -5.9988 4.5703 43 1 6.4328 -4.9049 2.5636 44 1 5.1523 -4.9189 0.4605 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427615309.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:23:15 Heat of formation + Delta-G solvation = -73.286057 kcal Electronic energy + Delta-G solvation = -24865.627989 eV Core-core repulsion = 21361.067966 eV Total energy + Delta-G solvation = -3504.560023 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.11719 -38.46579 -38.24011 -35.91812 -34.15683 -32.50707 -31.64740 -30.82199 -28.81621 -28.31009 -27.50225 -25.86674 -22.73580 -22.56700 -21.54927 -20.73259 -20.44299 -19.68481 -17.43279 -17.34837 -16.70049 -15.96673 -15.67603 -15.40381 -15.12357 -14.86212 -14.41018 -14.21222 -14.07066 -13.60259 -13.39195 -13.19864 -13.04173 -12.67031 -12.58849 -12.16838 -11.97951 -11.83086 -11.59010 -11.39798 -11.26472 -11.12340 -10.97469 -10.94949 -10.87516 -10.60532 -10.58032 -10.31452 -9.75486 -9.37852 -9.16833 -8.84283 -8.73693 -8.49687 -7.88084 -6.16106 -4.22896 1.33705 1.47977 3.23624 3.24543 3.30750 3.33304 3.38440 3.80997 4.28471 4.41938 4.50069 4.51952 4.74327 4.79414 4.93358 5.03880 5.07567 5.17133 5.20041 5.23694 5.30410 5.39638 5.46839 5.48491 5.51879 5.56424 5.66660 5.74950 5.78507 5.88747 5.97015 6.02966 6.10671 6.11883 6.18217 6.48404 6.56301 6.60696 7.03526 7.19333 7.33797 7.44188 7.52427 7.67675 7.96978 8.60654 8.78285 9.07907 9.43426 10.94188 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.015741 B = 0.003855 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.324057 B = 7261.585321 C = 8425.207194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.903 3.097 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.541 4.541 8 H 0.063 0.937 9 C 0.251 3.749 10 N -0.706 5.706 11 C 0.505 3.495 12 O -0.532 6.532 13 C 0.114 3.886 14 H 0.088 0.912 15 O -0.336 6.336 16 C 0.079 3.921 17 C -0.141 4.141 18 C -0.123 4.123 19 C -0.122 4.122 20 C -0.122 4.122 21 C -0.105 4.105 22 C -0.084 4.084 23 C -0.123 4.123 24 C -0.118 4.118 25 C -0.120 4.120 26 C -0.109 4.109 27 H 0.265 0.735 28 H 0.028 0.972 29 H 0.027 0.973 30 H 0.389 0.611 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.128 0.872 41 H 0.120 0.880 42 H 0.119 0.881 43 H 0.122 0.878 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.261 -18.724 1.419 22.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.730 3.270 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.580 4.580 8 H 0.081 0.919 9 C 0.131 3.869 10 N -0.356 5.356 11 C 0.288 3.712 12 O -0.408 6.408 13 C 0.052 3.948 14 H 0.106 0.894 15 O -0.253 6.253 16 C 0.021 3.979 17 C -0.179 4.179 18 C -0.161 4.161 19 C -0.160 4.160 20 C -0.159 4.159 21 C -0.106 4.106 22 C -0.102 4.102 23 C -0.141 4.141 24 C -0.136 4.136 25 C -0.138 4.138 26 C -0.127 4.127 27 H 0.075 0.925 28 H 0.046 0.954 29 H 0.045 0.955 30 H 0.222 0.778 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.097 0.903 40 H 0.146 0.854 41 H 0.138 0.862 42 H 0.137 0.863 43 H 0.140 0.860 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 11.011 -18.770 1.480 21.812 hybrid contribution 1.165 1.134 -0.012 1.626 sum 12.175 -17.636 1.467 21.481 Atomic orbital electron populations 1.69984 1.06100 1.27191 1.48954 1.24947 0.94905 0.99424 0.94716 0.86366 0.79836 0.82992 0.77756 1.19624 1.20792 1.20789 1.21240 0.93275 0.90350 1.53114 0.91855 1.19132 0.88219 0.81706 0.97837 1.46359 1.11166 1.05579 1.72480 1.19964 0.89028 0.83866 0.78360 1.90681 1.16231 1.84440 1.49497 1.20919 0.92642 0.86024 0.95252 0.89445 1.88068 1.40346 1.19043 1.77888 1.23304 0.93454 0.88051 0.93064 1.22821 1.00900 0.95193 0.99005 1.22052 0.98969 0.97651 0.97404 1.22070 0.97656 0.97547 0.98744 1.22400 0.98905 0.94051 1.00565 1.20089 0.94929 0.99926 0.95625 1.21000 0.99700 0.97741 0.91758 1.21142 0.95095 1.00138 0.97772 1.21150 0.96096 0.98101 0.98263 1.21053 1.00031 0.99828 0.92899 1.20995 0.94089 0.99028 0.98598 0.92491 0.95400 0.95460 0.77824 0.91349 0.90575 0.91585 0.91722 0.91905 0.91768 0.91512 0.91089 0.90269 0.85442 0.86157 0.86301 0.86000 0.85915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.22 13.29 55.43 0.74 -25.48 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 7 C -0.54 -14.77 9.28 -34.44 -0.32 -15.09 16 8 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 9 C 0.25 6.77 5.43 -5.19 -0.03 6.74 16 10 N -0.71 -15.30 5.50 -61.47 -0.34 -15.64 16 11 C 0.51 10.67 7.17 -10.98 -0.08 10.60 16 12 O -0.53 -13.62 16.51 -14.30 -0.24 -13.85 16 13 C 0.11 1.80 2.73 -29.03 -0.08 1.72 16 14 H 0.09 1.16 7.29 -51.93 -0.38 0.78 16 15 O -0.34 -5.36 8.47 -55.09 -0.47 -5.83 16 16 C 0.08 0.96 3.36 -24.75 -0.08 0.87 16 17 C -0.14 -1.46 6.41 -25.07 -0.16 -1.62 16 18 C -0.12 -1.03 6.80 -25.61 -0.17 -1.21 16 19 C -0.12 -1.04 6.80 -25.61 -0.17 -1.21 16 20 C -0.12 -1.33 6.55 -25.09 -0.16 -1.49 16 21 C -0.10 -1.51 4.76 -104.63 -0.50 -2.01 16 22 C -0.08 -1.20 9.35 -39.58 -0.37 -1.57 16 23 C -0.12 -1.52 10.05 -39.58 -0.40 -1.91 16 24 C -0.12 -1.34 10.05 -39.58 -0.40 -1.74 16 25 C -0.12 -1.38 10.05 -39.58 -0.40 -1.78 16 26 C -0.11 -1.37 9.52 -39.58 -0.38 -1.74 16 27 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 28 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.39 7.27 8.15 -40.82 -0.33 6.94 16 31 H 0.07 0.75 7.39 -51.93 -0.38 0.37 16 32 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.13 1.93 7.64 -52.49 -0.40 1.53 16 41 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 42 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 43 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 44 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 LS Contribution 368.40 15.07 5.55 5.55 Total: -1.00 -32.96 368.40 -10.52 -43.48 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -6.95 Total: 5.65 kcal Atomic # 6 Polarization: -5.97 SS G_CDS: -3.80 Total: -9.77 kcal Atomic # 7 Polarization: -41.52 SS G_CDS: 0.40 Total: -41.12 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: -0.70 Total: -19.68 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.96 -10.52 -43.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427615309.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.805 kcal (2) G-P(sol) polarization free energy of solvation -32.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds